From 1900998aa0b111fa435a6ab6bacec9f0e905ae31 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Tue, 23 Oct 2018 16:23:10 +0200
Subject: [PATCH] MultiQC: nf update psmn config
---
src/nf_modules/MultiQC/multiqc_paired.config | 8 ++++++--
src/nf_modules/MultiQC/multiqc_single.config | 6 ++++--
2 files changed, 10 insertions(+), 4 deletions(-)
diff --git a/src/nf_modules/MultiQC/multiqc_paired.config b/src/nf_modules/MultiQC/multiqc_paired.config
index d43e99b..3b55ccc 100644
--- a/src/nf_modules/MultiQC/multiqc_paired.config
+++ b/src/nf_modules/MultiQC/multiqc_paired.config
@@ -1,3 +1,4 @@
+
profiles {
docker {
docker.temp = 'auto'
@@ -14,7 +15,8 @@ profiles {
psmn {
process{
withname: fastqc_fastq {
- beforeScript = "module purge; module load FastQC/0.11.5"
+ beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
+ module = "FastQC/0.11.5"
executor = "psmn"
cpus = 1
memory = "5GB"
@@ -24,7 +26,8 @@ profiles {
queue = 'monointeldeb128'
}
withname: multiqc {
- beforeScript = "module purge; module load FastQC/1.0"
+ beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
+ module = "MultiQC/1.0"
executor = "psmn"
cpus = 1
memory = "5GB"
@@ -36,3 +39,4 @@ profiles {
}
}
}
+
diff --git a/src/nf_modules/MultiQC/multiqc_single.config b/src/nf_modules/MultiQC/multiqc_single.config
index d43e99b..eff0320 100644
--- a/src/nf_modules/MultiQC/multiqc_single.config
+++ b/src/nf_modules/MultiQC/multiqc_single.config
@@ -14,7 +14,8 @@ profiles {
psmn {
process{
withname: fastqc_fastq {
- beforeScript = "module purge; module load FastQC/0.11.5"
+ beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
+ module = "FastQC/0.11.5"
executor = "psmn"
cpus = 1
memory = "5GB"
@@ -24,7 +25,8 @@ profiles {
queue = 'monointeldeb128'
}
withname: multiqc {
- beforeScript = "module purge; module load FastQC/1.0"
+ beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
+ module = "MultiQC/1.0"
executor = "psmn"
cpus = 1
memory = "5GB"
--
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