diff --git a/src/nf_modules/sambamba/index_bams.config b/src/nf_modules/sambamba/index_bams.config index 2e4192153e34aeaa01db3e92f70311fd1e9c6ef0..e4eeaa0ff359f564308e178748aa22c58781cedd 100644 --- a/src/nf_modules/sambamba/index_bams.config +++ b/src/nf_modules/sambamba/index_bams.config @@ -11,7 +11,14 @@ profiles { psmn { process{ withname: index_bam { - beforeScript = "module purge; module load sambamba/0.6.7" + beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" + module = "sambamba/0.6.7" + executor = "sge" + cpus = 16 + memory = "30GB" + time = "24h" + queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F' + penv = 'openmp16' } } } diff --git a/src/nf_modules/sambamba/sort_bams.config b/src/nf_modules/sambamba/sort_bams.config index 041a7c7a1cc1fafa7571d647f35aedddea20ae6b..5c03e740aef18589e0f619051a662e0d0319f230 100644 --- a/src/nf_modules/sambamba/sort_bams.config +++ b/src/nf_modules/sambamba/sort_bams.config @@ -11,7 +11,14 @@ profiles { psmn { process{ withname: sort_bam { - beforeScript = "module purge; module load sambamba/0.6.7" + beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" + module = "sambamba/0.6.7" + executor = "sge" + cpus = 16 + memory = "30GB" + time = "24h" + queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F' + penv = 'openmp16' } } } diff --git a/src/nf_modules/sambamba/split_bams.config b/src/nf_modules/sambamba/split_bams.config index 1f10cb454a71c71bf845ad7624eab9907126e2c1..dc0b2d35434b056476828986c3c6e5b5e5df801b 100644 --- a/src/nf_modules/sambamba/split_bams.config +++ b/src/nf_modules/sambamba/split_bams.config @@ -11,7 +11,14 @@ profiles { psmn { process{ withname: split_bam { - beforeScript = "module purge; module load sambamba/0.6.7" + beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" + module = "sambamba/0.6.7" + executor = "sge" + cpus = 16 + memory = "30GB" + time = "24h" + queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F' + penv = 'openmp16' } } }