Commit 912bbf71 authored by nlecouvr's avatar nlecouvr
Browse files

outputting the results

parent 5a252dbe
......@@ -3,7 +3,7 @@ nextflow.enable.dsl=2
include { fastp } from "./nf_modules/fastp/main.nf"
include { fasta_from_bed } from "./nf_modules/bedtools/main.nf"
include { index_fasta; mapping_fastq } from './nf_modules/kallisto/main.nf'
include { index_fasta; mapping_fastq } from './nf_modules/kallisto/main.nf' addParams(mapping_fastq_out: "quantification/")
params.fastq = "data/fastq/*_{1,2}.fastq"
......
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