Commit 5bbfd7ab authored by nlecouvr's avatar nlecouvr
Browse files

fix

parent 3b4128e7
nextflow.enable.dsl=2
/*
./nextflow src/Dam_ID_analysis.nf -profile docker --reads "data/reads/data.fastq --genome "data/genome/dm6.fa
*/
/*========================= modules import ================================*/
include { fastp } from "./nf_modules/fastp/main.nf"
include { index_fasta, mapping_fastq } from "./nf_modules/bowtie2/main.nf"
include { index_fasta; mapping_fastq } from "./nf_modules/bowtie2/main.nf"
include { fasta_from_bed } from "./nef_modules/bedtool/main"
include { fasta_from_bed } from "./nef_modules/bedtool/main.nf"
......@@ -35,9 +42,8 @@ workflow {
index_fasta(fasta)
mapping_fastq(index_fasta.out.out.index.collect(),
reads)
}
workflow.onComplete {
println ( workflow.success "Au moins ça a pas planté, mais ça a surement pas marché quand même" )
}
}
\ No newline at end of file
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