tests.sh 741 Bytes
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nextflow src/nf_modules/cutadapt/tests/adaptor_removal_paired.nf \
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  -c src/nf_modules/cutadapt/cutadapt.config \
  -profile docker \
  --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq"

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nextflow src/nf_modules/cutadapt/tests/adaptor_removal_single.nf \
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  -c src/nf_modules/cutadapt/cutadapt.config \
  -profile docker \
  --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq"

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nextflow src/nf_modules/cutadapt/tests/trimming_paired.nf \
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  -c src/nf_modules/cutadapt/cutadapt.config \
  -profile docker \
  --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq"

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nextflow src/nf_modules/cutadapt/tests/trimming_single.nf \
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  -c src/nf_modules/cutadapt/cutadapt.config \
  -profile docker \
  --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq"