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FROM ubuntu:18.04
MAINTAINER Laurent Modolo

ENV HTSEQ_VERSION=0.8.0
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ENV PACKAGES build-essential \
             python3-pip \
             python3-setuptools \
             python3-dev \
             python3-wheel
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RUN apt-get update && \
    apt-get install -y --no-install-recommends ${PACKAGES} && \
    apt-get clean

RUN pip3 install numpy==1.14.3
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RUN pip3 install pysam==0.15.0
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RUN pip3 install HTSeq==${HTSEQ_VERSION}