#!/bin/sh set -eu PRG="$(basename -- "$0")" case "$PRG" in picard-tools) echo 1>&2 'Warning: picard-tools is deprecated and should be replaced by PicardCommandLine' ;; PicardCommandLine) ;; *) set -- "$PRG" "$@" ;; esac exec java ${JAVA_OPTIONS-} -jar /usr/share/java/picard.jar "$@"