FROM alpine:3.8 MAINTAINER Laurent Modolo ENV SAMTOOLS_VERSION=1.7 ENV PACKAGES git \ make \ gcc \ musl-dev \ zlib-dev \ ncurses-dev \ bzip2-dev \ xz-dev RUN apk update && \ apk add ${PACKAGES} RUN git clone https://github.com/samtools/htslib.git && \ cd htslib && \ git checkout ${SAMTOOLS_VERSION} && \ cd .. && \ git clone https://github.com/samtools/samtools.git && \ cd samtools && \ git checkout ${SAMTOOLS_VERSION} && \ make && \ cp samtools /usr/bin/