From eb58b93fc9aeef0a138f863a406a301de94b2b5d Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Tue, 23 Oct 2018 16:52:18 +0200
Subject: [PATCH] samblaster: nf update psmn config
---
src/nf_modules/samblaster/dedup_sams.config | 9 ++++++++-
1 file changed, 8 insertions(+), 1 deletion(-)
diff --git a/src/nf_modules/samblaster/dedup_sams.config b/src/nf_modules/samblaster/dedup_sams.config
index 646ecb8..06abf41 100644
--- a/src/nf_modules/samblaster/dedup_sams.config
+++ b/src/nf_modules/samblaster/dedup_sams.config
@@ -11,7 +11,14 @@ profiles {
psmn {
process{
withname: dedup_sam {
- beforeScript = "module purge; module load samblaster/0.1.24"
+ beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
+ module = "samblaster/0.1.24"
+ executor = "sge"
+ cpus = 16
+ memory = "30GB"
+ time = "24h"
+ queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
+ penv = 'openmp16'
}
}
}
--
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