diff --git a/src/nf_modules/RSEM/indexing.config b/src/nf_modules/RSEM/indexing.config index 4822bb0b8febffdf15ade3afa188021d6c3ece24..59cdf8fa07bff410dce257085e6b4e68cf95e123 100644 --- a/src/nf_modules/RSEM/indexing.config +++ b/src/nf_modules/RSEM/indexing.config @@ -11,7 +11,14 @@ profiles { psmn { process{ withname: index_fasta { - beforeScript = "module purge; module load RSEM/1.3.0; module load SAMtools/1.7" + beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" + module = "RSEM/1.3.0:SAMtools/1.7" + executor = "sge" + cpus = 16 + memory = "30GB" + time = "24h" + queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F' + penv = 'openmp16' } } }