From c7a2d66d10810a2f191c861077285c165fdeef6c Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 31 Jul 2018 14:24:42 +0200
Subject: [PATCH] Kallisto: change toList to collect
---
src/nf_modules/Kallisto/kallisto.nf | 4 ++--
src/nf_modules/Kallisto/tests/mapping_paired.nf | 2 +-
src/nf_modules/Kallisto/tests/mapping_single.nf | 2 +-
3 files changed, 4 insertions(+), 4 deletions(-)
diff --git a/src/nf_modules/Kallisto/kallisto.nf b/src/nf_modules/Kallisto/kallisto.nf
index 8867a0c..cd7b1ea 100644
--- a/src/nf_modules/Kallisto/kallisto.nf
+++ b/src/nf_modules/Kallisto/kallisto.nf
@@ -59,7 +59,7 @@ process mapping_fastq {
input:
set pair_id, file(reads) from fastq_files
- file index from index_files.toList()
+ file index from index_files.collect()
output:
file "*" into counts_files
@@ -104,7 +104,7 @@ process mapping_fastq {
input:
file reads from fastq_files
- file index from index_files.toList()
+ file index from index_files.collect()
output:
file "*" into count_files
diff --git a/src/nf_modules/Kallisto/tests/mapping_paired.nf b/src/nf_modules/Kallisto/tests/mapping_paired.nf
index 8e8f94c..1571837 100644
--- a/src/nf_modules/Kallisto/tests/mapping_paired.nf
+++ b/src/nf_modules/Kallisto/tests/mapping_paired.nf
@@ -20,7 +20,7 @@ process mapping_fastq {
input:
set pair_id, file(reads) from fastq_files
- file index from index_files.toList()
+ file index from index_files.collect()
output:
file "*" into counts_files
diff --git a/src/nf_modules/Kallisto/tests/mapping_single.nf b/src/nf_modules/Kallisto/tests/mapping_single.nf
index 2a46cbe..69e3a6f 100644
--- a/src/nf_modules/Kallisto/tests/mapping_single.nf
+++ b/src/nf_modules/Kallisto/tests/mapping_single.nf
@@ -24,7 +24,7 @@ process mapping_fastq {
input:
file reads from fastq_files
- file index from index_files.toList()
+ file index from index_files.collect()
output:
file "*" into count_files
--
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