diff --git a/src/nf_modules/BEDtools/fasta_from_bed.config b/src/nf_modules/BEDtools/fasta_from_bed.config index 7230defdf79531542217cfc97cf85dee1888fe91..f4b744b71baea3607df8ea0b447e283c921f3455 100644 --- a/src/nf_modules/BEDtools/fasta_from_bed.config +++ b/src/nf_modules/BEDtools/fasta_from_bed.config @@ -3,23 +3,21 @@ profiles { docker.temp = 'auto' docker.enabled = true process { - $fasta_from_bed { + withName: fasta_from_bed { container = "bedtools:2.25.0" } } } sge { process{ - $fasta_from_bed { - beforeScript = "module purge; module load BEDtools/2.25.0" + withName: fasta_from_bed { + beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" + module = "BEDtools/2.25.0" executor = "sge" cpus = 1 - memory = "5GB" - time = "6h" - queueSize = 1000 - pollInterval = '60sec' - queue = 'h6-E5-2667v4deb128' - penv = 'openmp8' + memory = "20GB" + time = "12h" + queue = 'monointeldeb128' } } }