From 5760392e77a13d4226665e736bf43c4a6c6b4ffe Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Tue, 23 Oct 2018 16:53:43 +0200
Subject: [PATCH] FastQC: nf update psmn config
---
src/nf_modules/FastQC/fastqc_paired.config | 9 ++++-----
src/nf_modules/FastQC/fastqc_single.config | 9 ++++-----
2 files changed, 8 insertions(+), 10 deletions(-)
diff --git a/src/nf_modules/FastQC/fastqc_paired.config b/src/nf_modules/FastQC/fastqc_paired.config
index 31b0daa..67e68c7 100644
--- a/src/nf_modules/FastQC/fastqc_paired.config
+++ b/src/nf_modules/FastQC/fastqc_paired.config
@@ -11,13 +11,12 @@ profiles {
psmn {
process{
withname: fastqc_fastq {
- beforeScript = "module purge; module load FastQC/0.11.5"
+ beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
+ module = "FastQC/0.11.5"
executor = "sge"
cpus = 1
- memory = "5GB"
- time = "6h"
- queueSize = 1000
- pollInterval = '60sec'
+ memory = "20GB"
+ time = "12h"
queue = 'monointeldeb128'
}
}
diff --git a/src/nf_modules/FastQC/fastqc_single.config b/src/nf_modules/FastQC/fastqc_single.config
index 31b0daa..67e68c7 100644
--- a/src/nf_modules/FastQC/fastqc_single.config
+++ b/src/nf_modules/FastQC/fastqc_single.config
@@ -11,13 +11,12 @@ profiles {
psmn {
process{
withname: fastqc_fastq {
- beforeScript = "module purge; module load FastQC/0.11.5"
+ beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
+ module = "FastQC/0.11.5"
executor = "sge"
cpus = 1
- memory = "5GB"
- time = "6h"
- queueSize = 1000
- pollInterval = '60sec'
+ memory = "20GB"
+ time = "12h"
queue = 'monointeldeb128'
}
}
--
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