From 543e35a034664b195e5c7f78644214d9d43c57e4 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Wed, 19 Dec 2018 15:40:25 +0100
Subject: [PATCH] deepTools: add config file for bam_to_bigwig
---
src/nf_modules/deepTools/bam_to_bigwig.config | 24 +++++++++++++++++++
1 file changed, 24 insertions(+)
create mode 100644 src/nf_modules/deepTools/bam_to_bigwig.config
diff --git a/src/nf_modules/deepTools/bam_to_bigwig.config b/src/nf_modules/deepTools/bam_to_bigwig.config
new file mode 100644
index 0000000..6ecf0ac
--- /dev/null
+++ b/src/nf_modules/deepTools/bam_to_bigwig.config
@@ -0,0 +1,24 @@
+profiles {
+ docker {
+ docker.temp = 'auto'
+ docker.enabled = true
+ process {
+ withName: bam_to_bigwig {
+ container = "deeptools:3.0.2"
+ }
+ }
+ }
+ psmn {
+ process{
+ withName: bam_to_bigwig {
+ beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
+ module = "deepTools/3.0.2"
+ executor = "sge"
+ clusterOptions = "-m e -cwd -V"
+ memory = "20GB"
+ time = "12h"
+ queue = 'monointeldeb128'
+ }
+ }
+ }
+}
--
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