From 4beda1d113930eb620717ea6a734cfedec76db7d Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Fri, 12 Oct 2018 09:30:55 +0200
Subject: [PATCH] 1_JU28_59vs17_SNP_calling.sh: change genome ref for
 intersect_SNP.R

---
 src/1_JU28_59vs17_SNP_calling.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/1_JU28_59vs17_SNP_calling.sh b/src/1_JU28_59vs17_SNP_calling.sh
index 415a58f..b31f6c5 100644
--- a/src/1_JU28_59vs17_SNP_calling.sh
+++ b/src/1_JU28_59vs17_SNP_calling.sh
@@ -32,7 +32,7 @@ src/intersect_SNP.R \
 src/intersect_SNP.R \
   results/SNP/vcf_samtools/normal_sample_filtered.csv \
   results/SNP/vcf_samtools/tumor_sample_filtered.csv \
-  results/fasta/DBG2OLC_output2_filtered.fasta \
+  results/fasta/final_assembly_filtered.fasta \
   data/list_of_enzymes.csv
 ~/scripts/sms.sh "SNP analysis done"
 
-- 
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