From 49faa7f082b244ce2b4a12d303abb4c3df70c7a1 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Wed, 25 Jul 2018 13:58:51 +0200
Subject: [PATCH] FastQC/fastqc.config: update sge config
---
src/nf_modules/FastQC/fastqc.config | 9 ++++++++-
1 file changed, 8 insertions(+), 1 deletion(-)
diff --git a/src/nf_modules/FastQC/fastqc.config b/src/nf_modules/FastQC/fastqc.config
index e7b3280..db3b027 100644
--- a/src/nf_modules/FastQC/fastqc.config
+++ b/src/nf_modules/FastQC/fastqc.config
@@ -11,7 +11,14 @@ profiles {
sge {
process{
$fastqc {
- beforeScript = "source /home/elabaron/.bashrc ; module load FastQC/0.11.5"
+ beforeScript = "module purge; module load FastQC/0.11.5"
+ executor = "sge"
+ cpus = 1
+ memory = "5GB"
+ time = "6h"
+ queueSize = 1000
+ pollInterval = '60sec'
+ queue = 'monointeldeb128'
}
}
}
--
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