From 3ecf28b8b92dba1fa18c6e06dc57c0d4636b916c Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Tue, 16 Oct 2018 15:36:21 +0200
Subject: [PATCH] restore bowtie2 from dev
---
src/docker_modules/Bowtie2/2.3.4.1/Dockerfile | 20 +------------------
1 file changed, 1 insertion(+), 19 deletions(-)
diff --git a/src/docker_modules/Bowtie2/2.3.4.1/Dockerfile b/src/docker_modules/Bowtie2/2.3.4.1/Dockerfile
index ab3f2e0..0f4ac75 100644
--- a/src/docker_modules/Bowtie2/2.3.4.1/Dockerfile
+++ b/src/docker_modules/Bowtie2/2.3.4.1/Dockerfile
@@ -1,4 +1,4 @@
-FROM sambamba:0.6.7
+FROM ubuntu:18.04
MAINTAINER Laurent Modolo
ENV BOWTIE2_VERSION=2.3.4.1
@@ -10,21 +10,3 @@ ENV PACKAGES bowtie2=${BOWTIE2_VERSION}* \
RUN apt-get update && \
apt-get install -y --no-install-recommends ${PACKAGES} && \
apt-get clean
-
-ENV PACKAGES curl=7.58.0* \
- ca-certificates=20180409 \
- build-essential=12.4* \
- zlib1g-dev=1:1.2.11*
-
-RUN apt-get update && \
- apt-get install -y --no-install-recommends ${PACKAGES} && \
- apt-get clean
-
-ENV SAMBLASTER_VERSION=0.1.24
-RUN curl -k -L https://github.com/GregoryFaust/samblaster/releases/download/v.${SAMBLASTER_VERSION}/samblaster-v.${SAMBLASTER_VERSION}.tar.gz -o samblaster-v.${SAMBLASTER_VERSION}.tar.gz && \
-tar xvf samblaster-v.${SAMBLASTER_VERSION}.tar.gz && \
-cd samblaster-v.${SAMBLASTER_VERSION}/ && \
-make && \
-cp samblaster /usr/bin && \
-cd .. && \
-rm -R samblaster-v.${SAMBLASTER_VERSION}/
--
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