From 3680aa85b58a9725a843ee0148f9d23d5c5b545d Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 31 Jul 2018 14:23:16 +0200
Subject: [PATCH] Bowtie: change toList to collect
---
src/nf_modules/Bowtie/bowtie.nf | 4 ++--
src/nf_modules/Bowtie/tests/mapping_paired.nf | 2 +-
src/nf_modules/Bowtie/tests/mapping_single.nf | 2 +-
3 files changed, 4 insertions(+), 4 deletions(-)
diff --git a/src/nf_modules/Bowtie/bowtie.nf b/src/nf_modules/Bowtie/bowtie.nf
index d51ec4d..ff7ad04 100644
--- a/src/nf_modules/Bowtie/bowtie.nf
+++ b/src/nf_modules/Bowtie/bowtie.nf
@@ -65,7 +65,7 @@ process mapping_fastq {
input:
set pair_id, file(reads) from fastq_files
- file index from index_files.toList()
+ file index from index_files.collect()
output:
file "*.bam" into bam_files
@@ -117,7 +117,7 @@ process mapping_fastq {
input:
file reads from fastq_files
- file index from index_files.toList()
+ file index from index_files.collect()
output:
file "*.bam" into bam_files
diff --git a/src/nf_modules/Bowtie/tests/mapping_paired.nf b/src/nf_modules/Bowtie/tests/mapping_paired.nf
index 6ea2d70..600e295 100644
--- a/src/nf_modules/Bowtie/tests/mapping_paired.nf
+++ b/src/nf_modules/Bowtie/tests/mapping_paired.nf
@@ -20,7 +20,7 @@ process mapping_fastq {
input:
set pair_id, file(reads) from fastq_files
- file index from index_files.toList()
+ file index from index_files.collect()
output:
file "*.bam" into bam_files
diff --git a/src/nf_modules/Bowtie/tests/mapping_single.nf b/src/nf_modules/Bowtie/tests/mapping_single.nf
index 551b90c..ad94f5b 100644
--- a/src/nf_modules/Bowtie/tests/mapping_single.nf
+++ b/src/nf_modules/Bowtie/tests/mapping_single.nf
@@ -19,7 +19,7 @@ process mapping_fastq {
input:
file reads from fastq_files
- file index from index_files.toList()
+ file index from index_files.collect()
output:
file "*.bam" into bam_files
--
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