From 1fbc5ef8e9ce8d5b36c92fbc34ffc71e440524ac Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Thu, 2 Aug 2018 17:21:35 +0200
Subject: [PATCH] MultiQC: update test to match fastqc.nf
---
src/nf_modules/MultiQC/tests/multiqc_single.nf | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/src/nf_modules/MultiQC/tests/multiqc_single.nf b/src/nf_modules/MultiQC/tests/multiqc_single.nf
index 4842803..ea1115b 100644
--- a/src/nf_modules/MultiQC/tests/multiqc_single.nf
+++ b/src/nf_modules/MultiQC/tests/multiqc_single.nf
@@ -5,15 +5,16 @@ log.info "fastq files : ${params.fastq}"
Channel
.fromPath( params.fastq )
.ifEmpty { error "Cannot find any fastq files matching: ${params.fastq}" }
+ .map { it -> [(it.baseName =~ /([^\.]*)/)[0][1], it]}
.set { fastq_files }
process fastqc_fastq {
- tag "$reads.baseName"
+ tag "$file_id"
publishDir "results/fastq/fastqc/", mode: 'copy'
cpus = 1
input:
- file reads from fastq_files
+ set file_id, file(reads) from fastq_files
output:
file "*.{zip,html}" into fastqc_report
--
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