diff --git a/src/nf_modules/MultiQC/tests/multiqc_single.nf b/src/nf_modules/MultiQC/tests/multiqc_single.nf index 484280306ec652f88ab3d1ae9ff95d96d4a24b62..ea1115b546f0776a4970e4a56fefcce5e3b90de9 100644 --- a/src/nf_modules/MultiQC/tests/multiqc_single.nf +++ b/src/nf_modules/MultiQC/tests/multiqc_single.nf @@ -5,15 +5,16 @@ log.info "fastq files : ${params.fastq}" Channel .fromPath( params.fastq ) .ifEmpty { error "Cannot find any fastq files matching: ${params.fastq}" } + .map { it -> [(it.baseName =~ /([^\.]*)/)[0][1], it]} .set { fastq_files } process fastqc_fastq { - tag "$reads.baseName" + tag "$file_id" publishDir "results/fastq/fastqc/", mode: 'copy' cpus = 1 input: - file reads from fastq_files + set file_id, file(reads) from fastq_files output: file "*.{zip,html}" into fastqc_report