From 1ca6652905f5f3bdaced42d18c905bd59b2541e5 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Fri, 12 Oct 2018 09:16:25 +0200
Subject: [PATCH] intersect_SNP.R: fix getting sequences part
---
src/intersect_SNP.R | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/src/intersect_SNP.R b/src/intersect_SNP.R
index 19999d1..50fa2e8 100755
--- a/src/intersect_SNP.R
+++ b/src/intersect_SNP.R
@@ -55,7 +55,8 @@ snp$seq_list <- snp %>%
},
fastafile = fastafile,
POS = which(colnames(snp) %in% "POS"),
- CHROM = which(colnames(snp) %in% "CHROM")
+ CHROM = which(colnames(snp) %in% "CHROM"),
+ seq_restric_size = seq_restric_size
)
snp %>%
--
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