From 0633f5167495c614080f0f362ef227405bddf0a1 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 5 Jun 2018 15:21:33 +0200
Subject: [PATCH] TP_experimental_biologists.md: add images

---
 doc/TP_experimental_biologists.md | 10 ++++++----
 1 file changed, 6 insertions(+), 4 deletions(-)

diff --git a/doc/TP_experimental_biologists.md b/doc/TP_experimental_biologists.md
index ca1fc3f..ec5d07f 100644
--- a/doc/TP_experimental_biologists.md
+++ b/doc/TP_experimental_biologists.md
@@ -11,9 +11,7 @@ output:
     latex_engine: xelatex
 ---
 
-# TP for experimental biologists
-
-The Goal of this practical is to learn how to build your own pipeline with nextflow and using the tools already *wrapped* in Docker and SGE.
+The Goal of this practical is to learn how to build your own pipeline with nextflow and using the tools already *wrapped*.
 For this we are going to build a small RNASeq analysis pipeline that should run the following steps:
 
 - remove Illumina adaptors
@@ -21,13 +19,17 @@ For this we are going to build a small RNASeq analysis pipeline that should run
 - build the index of a reference genome
 - estimate the number of RNA fragments mapping to the transcript of this genome
 
-## Initialize your own project
+# Initialize your own project
 
 You are going to build a pipeline for you or your team. So the first step is to create your own project.
 
 Instead of reinventing the wheel, you can use the [pipelines/nextflow](https://gitlab.biologie.ens-lyon.fr/pipelines/nextflow) as a template.
 To easily do so, go to the [pipelines/nextflow](https://gitlab.biologie.ens-lyon.fr/pipelines/nextflow) repository and click on the [**fork**](https://gitlab.biologie.ens-lyon.fr/pipelines/nextflow/forks/new) button.
 
+![fork button](img/fork.png)
+
 In git, the [action of forking](https://git-scm.com/book/en/v2/GitHub-Contributing-to-a-Project) means that you are going to make your own private copy of a repository. You can then write modifications in your project, and if they are of interest for the source repository (here [pipelines/nextflow](https://gitlab.biologie.ens-lyon.fr/pipelines/nextflow)) create a merge request. Merge request are send to the source repository to ask the maintainers to integrate modifications.
 
+![merge request button](img/merge_request.png)
+
 
-- 
GitLab