From 051b3925509c0fe819edf17902860fdfbc8cd391 Mon Sep 17 00:00:00 2001 From: Laurent Modolo <laurent.modolo@ens-lyon.fr> Date: Fri, 1 Jun 2018 15:36:20 +0200 Subject: [PATCH] UrQt: add tests --- src/nf_modules/UrQt/tests/tests.sh | 4 ++-- src/nf_modules/UrQt/urqt.nf | 1 + 2 files changed, 3 insertions(+), 2 deletions(-) diff --git a/src/nf_modules/UrQt/tests/tests.sh b/src/nf_modules/UrQt/tests/tests.sh index 49099e2..ebad731 100644 --- a/src/nf_modules/UrQt/tests/tests.sh +++ b/src/nf_modules/UrQt/tests/tests.sh @@ -1,9 +1,9 @@ nextflow src/nf_modules/UrQt/tests/trimming_paired.nf \ - -c src/nf_modules/UrQt/UrQt.config \ + -c src/nf_modules/UrQt/urqt.config \ -profile docker \ --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq" nextflow src/nf_modules/UrQt/tests/trimming_single.nf \ - -c src/nf_modules/UrQt/UrQt.config \ + -c src/nf_modules/UrQt/urqt.config \ -profile docker \ --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq" diff --git a/src/nf_modules/UrQt/urqt.nf b/src/nf_modules/UrQt/urqt.nf index 4c0d07c..87a3728 100644 --- a/src/nf_modules/UrQt/urqt.nf +++ b/src/nf_modules/UrQt/urqt.nf @@ -62,6 +62,7 @@ process trimming { script: """ + UrQt --t 20 --m ${task.cpus} --gz \ --in ${reads} \ --out ${reads.baseName}_trim.fastq.gz \ -- GitLab