diff --git a/src/nf_modules/UrQt/tests/tests.sh b/src/nf_modules/UrQt/tests/tests.sh index 49099e2189dee512fecf84da9cc858c62ff97591..ebad73150b861322459f118dd63c2e2fd81af1f3 100644 --- a/src/nf_modules/UrQt/tests/tests.sh +++ b/src/nf_modules/UrQt/tests/tests.sh @@ -1,9 +1,9 @@ nextflow src/nf_modules/UrQt/tests/trimming_paired.nf \ - -c src/nf_modules/UrQt/UrQt.config \ + -c src/nf_modules/UrQt/urqt.config \ -profile docker \ --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq" nextflow src/nf_modules/UrQt/tests/trimming_single.nf \ - -c src/nf_modules/UrQt/UrQt.config \ + -c src/nf_modules/UrQt/urqt.config \ -profile docker \ --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq" diff --git a/src/nf_modules/UrQt/urqt.nf b/src/nf_modules/UrQt/urqt.nf index 4c0d07c988143e59eb1090675bce333e99a829a3..87a372846d6536699ef7c3a420561376139c2a23 100644 --- a/src/nf_modules/UrQt/urqt.nf +++ b/src/nf_modules/UrQt/urqt.nf @@ -62,6 +62,7 @@ process trimming { script: """ + UrQt --t 20 --m ${task.cpus} --gz \ --in ${reads} \ --out ${reads.baseName}_trim.fastq.gz \