From f594ce8854c8385c6b59b4a01a48ff1d875e89b2 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Mon, 4 Jun 2018 14:45:35 +0200
Subject: [PATCH] Bowtie2: add samtools to Dockerfile
---
src/nf_modules/Bowtie2/2.3.4.1/Dockerfile | 5 ++++-
1 file changed, 4 insertions(+), 1 deletion(-)
diff --git a/src/nf_modules/Bowtie2/2.3.4.1/Dockerfile b/src/nf_modules/Bowtie2/2.3.4.1/Dockerfile
index 886026e..f8b1c5c 100644
--- a/src/nf_modules/Bowtie2/2.3.4.1/Dockerfile
+++ b/src/nf_modules/Bowtie2/2.3.4.1/Dockerfile
@@ -2,7 +2,10 @@ FROM ubuntu:18.04
MAINTAINER Laurent Modolo
ENV BOWTIE2_VERSION=2.3.4.1
-ENV PACKAGES bowtie2=${BOWTIE2_VERSION}*
+ENV SAMTOOLS_VERSION=1.7
+ENV PACKAGES bowtie2=${BOWTIE2_VERSION}* \
+ samtools=${SAMTOOLS_VERSION}*
+
RUN apt-get update && \
apt-get install -y --no-install-recommends ${PACKAGES} && \
--
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