From c27ac9cb52d47bb63f6b8a364e8398827682ed5a Mon Sep 17 00:00:00 2001 From: Laurent Modolo <laurent@modolo.fr> Date: Fri, 29 Mar 2019 15:20:09 +0100 Subject: [PATCH] hisat2: add v2.1.0 --- apps/hisat2/.gitignore | 1 + apps/hisat2/install_2.0.0.sh | 11 ++++++----- apps/hisat2/install_2.1.0.sh | 11 ++++++----- 3 files changed, 13 insertions(+), 10 deletions(-) create mode 100644 apps/hisat2/.gitignore diff --git a/apps/hisat2/.gitignore b/apps/hisat2/.gitignore new file mode 100644 index 0000000..355164c --- /dev/null +++ b/apps/hisat2/.gitignore @@ -0,0 +1 @@ +*/ diff --git a/apps/hisat2/install_2.0.0.sh b/apps/hisat2/install_2.0.0.sh index 339f196..27464f0 100644 --- a/apps/hisat2/install_2.0.0.sh +++ b/apps/hisat2/install_2.0.0.sh @@ -36,12 +36,13 @@ source ../build_env.sh HISAT2_VERSION=2.0.0 -curl -k -L http://ccb.jhu.edu/software/hisat2/downloads/hisat2-${HISAT2_VERSION}-beta-source.zip -o hisat2_linux-v${HISAT2_VERSION}.zip -unzip hisat2_linux-v${HISAT2_VERSION}.zip +curl -k -L http://ccb.jhu.edu/software/hisat2/downloads/hisat2-${HISAT2_VERSION}-beta-source.zip -o hisat2_linux-v${HISAT2_VERSION}.zip +unzip hisat2_linux-v${HISAT2_VERSION}.zip mkdir ${HISAT2_VERSION} mkdir ${HISAT2_VERSION}/bin -cd hisat2-${HISAT2_VERSION}-beta -make +cd hisat2-${HISAT2_VERSION}-beta +make cp hisat2 ../${HISAT2_VERSION}/bin && \ cp hisat2-* ../${HISAT2_VERSION}/bin && \ -rm -Rf hisat2-${HISAT2_VERSION}-beta +rm -Rf hisat2-${HISAT2_VERSION}-beta +rm -Rf hisat2-${HISAT2_VERSION}-beta.zip diff --git a/apps/hisat2/install_2.1.0.sh b/apps/hisat2/install_2.1.0.sh index 1b33c33..9c96810 100644 --- a/apps/hisat2/install_2.1.0.sh +++ b/apps/hisat2/install_2.1.0.sh @@ -36,12 +36,13 @@ source ../build_env.sh HISAT2_VERSION=2.1.0 -curl -k -L http://ccb.jhu.edu/software/hisat2/downloads/hisat2-${HISAT2_VERSION}-beta-source.zip -o hisat2_linux-v${HISAT2_VERSION}.zip -unzip hisat2_linux-v${HISAT2_VERSION}.zip +curl -k -L http://ccb.jhu.edu/software/hisat2/dl/hisat2-${HISAT2_VERSION}-source.zip -o hisat2_linux-v${HISAT2_VERSION}.zip +unzip hisat2_linux-v${HISAT2_VERSION}.zip mkdir ${HISAT2_VERSION} mkdir ${HISAT2_VERSION}/bin -cd hisat2-${HISAT2_VERSION}-beta -make +cd hisat2-${HISAT2_VERSION} +make cp hisat2 ../${HISAT2_VERSION}/bin && \ cp hisat2-* ../${HISAT2_VERSION}/bin && \ -rm -Rf hisat2-${HISAT2_VERSION}-beta +rm -Rf hisat2-${HISAT2_VERSION} +rm -Rf hisat2-${HISAT2_VERSION}.zip -- GitLab