diff --git a/modulefiles/SAMtools/1.5 b/modulefiles/SAMtools/1.5 index cf08e2806f6078fb2ebac1d271a174452c2981d2..2e94d1c15d06c098e32ac047f8f3505b84cba577 100644 --- a/modulefiles/SAMtools/1.5 +++ b/modulefiles/SAMtools/1.5 @@ -1,4 +1,3 @@ -#%Module1.0#################################################################### # Copyright laurent modolo for the LBMC UMR 5239 ©. # contributor(s) : laurent modolo (2017) # @@ -32,36 +31,12 @@ # # The fact that you are presently reading this means that you have had # knowledge of the CeCILL license and that you accept its terms. -## -## -############################################################################### -# for Tcl script use only -set version 1.5 -set modname SAMtools -set osarch "Debian 7" -set modroot /Xnfs/site/lbmcdb/common/modules/apps/SAMtools/1.5 -setenv LAST_MODULE $modname/$version - -############################################################################### -proc ModulesHelp { } { - global modname version osarch - puts stderr "\nThis set the environment variables for $modname $version - $osarch." -} - - -module-whatis "loads $modname $version ($osarch) environment" -############################################################################### - -# conflict -conflict $modname - -if [ module-info mode load ] { - prereq Base/psmn -} - -prepend-path PATH $modroot/bin -prepend-path LD_LIBRARY_PATH $modroot/lib -prepend-path INCLUDE $modroot/include/htslib -prepend-path MANPATH $modroot/share/man -setenv SAMTOOLS_PATH $modroot/bin +setenv("LAST_MODULE","SAMtools/1.5") +whatis([===[loads SAMtools 1.5 (Debian 7) environment ]===]) +conflict("SAMtools") +prepend_path{"PATH","/Xnfs/site/lbmcdb/common/modules/apps/SAMtools/1.5/bin",delim=":",priority="0"} +prepend_path{"LD_LIBRARY_PATH","/Xnfs/site/lbmcdb/common/modules/apps/SAMtools/1.5/lib",delim=":",priority="0"} +prepend_path{"INCLUDE","/Xnfs/site/lbmcdb/common/modules/apps/SAMtools/1.5/include/htslib",delim=":",priority="0"} +prepend_path{"MANPATH","/Xnfs/site/lbmcdb/common/modules/apps/SAMtools/1.5/share/man",delim=":",priority="0"} +setenv("SAMTOOLS_PATH","/Xnfs/site/lbmcdb/common/modules/apps/SAMtools/1.5/bin")