Commit c2a64c6c authored by mcariou's avatar mcariou
Browse files

update tabass

parent f90dc9e7
......@@ -255,7 +255,7 @@ Origin<-rep("pneumo", 6)
tabAss<-rbind(tabAss, cbind(Taxonomy, Assembly, Origin))
write.table(tabAss, paste0(home, "/phylolegio/doc/tabAss.txt"), quote=FALSE, row.names=FALSE)
write.table(tabAss, paste0(home, "/phylolegio/doc/tabAss.txt"), quote=FALSE, row.names=FALSE, sep=";")
@
......
This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex 2021.6.16) 12 OCT 2021 15:14
This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex 2021.6.16) 13 OCT 2021 14:52
entering extended mode
restricted \write18 enabled.
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......@@ -1901,10 +1901,10 @@ enome : FQ958210.1
Package xcolor Warning: Incompatible color definition on input line 527.
Overfull \hbox (174.62796pt too wide) in paragraph at lines 545--545
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[][]\OT1/cmtt/m/n/10.95 write.table[][](tabAss,[] []paste0[][](home,[] []"/phyl
olegio/doc/tabAss.txt"[][]),[] []quote[][]=[][]FALSE[][],[] []row.names[][]=[][
]FALSE[][])[][]
]FALSE[][],[] []sep[][]=[][]";"[][])[][]
[]
[10]
......@@ -1977,7 +1977,7 @@ c/amsfonts/cm/cmr17.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm
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Output written on 1_reference_legio_phylo.pdf (12 pages, 153937 bytes).
Output written on 1_reference_legio_phylo.pdf (12 pages, 153946 bytes).
PDF statistics:
182 PDF objects out of 1000 (max. 8388607)
156 compressed objects within 2 object streams
......
......@@ -542,7 +542,7 @@ Manual research of reference genomes using gupta1
\hlstd{tabAss}\hlkwb{<-}\hlkwd{rbind}\hlstd{(tabAss,} \hlkwd{cbind}\hlstd{(Taxonomy, Assembly, Origin))}
\hlkwd{write.table}\hlstd{(tabAss,} \hlkwd{paste0}\hlstd{(home,} \hlstr{"/phylolegio/doc/tabAss.txt"}\hlstd{),} \hlkwc{quote}\hlstd{=}\hlnum{FALSE}\hlstd{,} \hlkwc{row.names}\hlstd{=}\hlnum{FALSE}\hlstd{)}
\hlkwd{write.table}\hlstd{(tabAss,} \hlkwd{paste0}\hlstd{(home,} \hlstr{"/phylolegio/doc/tabAss.txt"}\hlstd{),} \hlkwc{quote}\hlstd{=}\hlnum{FALSE}\hlstd{,} \hlkwc{row.names}\hlstd{=}\hlnum{FALSE}\hlstd{,} \hlkwc{sep}\hlstd{=}\hlstr{";"}\hlstd{)}
\end{alltt}
\end{kframe}
\end{knitrout}
......
Assembly Taxonomy Origin
GCA_001467055.1 Legionella adelaidensis Burstein
GCA_001467525.1 Legionella anisa Burstein
GCA_001467505.1 Legionella birminghamensis Burstein
GCA_001467045.1 Legionella bozemanae Burstein
GCA_001467025.1 Legionella brunensis Burstein
GCA_001467035.1 Legionella cherrii Burstein
GCA_001467545.1 Legionella cincinnatiensis Burstein
GCA_001467585.1 Legionella drozanskii LLAP-1 Burstein
GCA_001467615.1 Legionella erythra Burstein
GCA_001467625.1 Legionella feeleii Burstein
GCA_001467645.1 Legionella geestiana Burstein
GCA_001467695.1 Legionella gratiana Burstein
GCA_001467705.1 Legionella hackeliae Burstein
GCA_001467785.1 Legionella israelensis Burstein
GCA_001467745.1 Legionella jamestowniensis Burstein
GCA_001467765.1 Legionella jordanis Burstein
GCA_001467795.1 Legionella lansingensis Burstein
GCA_001467825.1 Legionella londiniensis Burstein
GCA_001467845.1 Legionella maceachernii Burstein
GCA_001467865.1 Legionella moravica Burstein
GCA_001467895.1 Legionella nautarum Burstein
GCA_001467925.1 Legionella oakridgensis Burstein
GCA_001467945.1 Legionella parisiensis Burstein
GCA_001467955.1 Legionella quateirensis Burstein
GCA_001467975.1 Legionella quinlivanii Burstein
GCA_001468125.1 Legionella rubrilucens Burstein
GCA_001468105.1 Legionella sainthelensi Burstein
GCA_001468135.1 Legionella santicrucis Burstein
GCA_001468025.1 Legionella shakespearei DSM 23087 Burstein
GCA_001468165.1 Legionella spiritensis Burstein
GCA_001468005.1 Legionella steelei Burstein
GCA_001468065.1 Legionella steigerwaltii Burstein
GCA_001468035.1 Legionella tucsonensis Burstein
GCA_001468085.1 Legionella waltersii Burstein
GCA_001467535.1 Legionella worsleiensis Burstein
GCA_900452395.1 Legionella beliardensis gupta
GCA_002240035.1 Legionella clemsonensis gupta
GCA_000162755.2 Legionella drancourtii gupta
GCA_002776555.1 Legionella endosymbiont of Polyplax serrata PsAG gupta
GCA_000621525.1 Legionella fairfieldensis gupta
GCA_000953135.1 Legionella fallonii gupta
GCA_900639875.1 Legionella impletisoli gupta
GCA_000091785.1 Legionella longbeachae gupta
GCA_000756815.1 Legionella massiliensis gupta
GCA_900639915.1 Legionella nagasakiensis gupta
GCA_000770585.1 Legionella norrlandica gupta
GCA_900639985.1 Legionella rowbothamii gupta
GCA_001465875.1 Legionella saoudiensis gupta
GCA_003070665.1 Legionella taurinensis gupta
GCA_000308315.1 Legionella tunisiensis gupta
GCA_000701265.1 Legionella wadsworthii gupta
GCA_900640115.1 Legionella yabuuchiae gupta
GCA_001572745.1 Coxiella burnetii gupta
GCA_000048645.1 Legionella pneumophila Paris pneumo
GCA_000048665.1 Legionella pneumophila Lens pneumo
GCA_000008485.1 Legionella pneumophila Philadelphia pneumo
GCA_000092545.1 Legionella pneumophila Corby pneumo
GCA_000092625.1 Legionella pneumophila Alcoy pneumo
GCA_000306865.1 Legionella pneumophila Lorraine pneumo
Assembly;Taxonomy;Origin
GCA_001467055.1;Legionella adelaidensis;Burstein
GCA_001467525.1;Legionella anisa;Burstein
GCA_001467505.1;Legionella birminghamensis;Burstein
GCA_001467045.1;Legionella bozemanae;Burstein
GCA_001467025.1;Legionella brunensis;Burstein
GCA_001467035.1;Legionella cherrii;Burstein
GCA_001467545.1;Legionella cincinnatiensis;Burstein
GCA_001467585.1;Legionella drozanskii LLAP-1;Burstein
GCA_001467615.1;Legionella erythra;Burstein
GCA_001467625.1;Legionella feeleii;Burstein
GCA_001467645.1;Legionella geestiana;Burstein
GCA_001467695.1;Legionella gratiana;Burstein
GCA_001467705.1;Legionella hackeliae;Burstein
GCA_001467785.1;Legionella israelensis;Burstein
GCA_001467745.1;Legionella jamestowniensis;Burstein
GCA_001467765.1;Legionella jordanis;Burstein
GCA_001467795.1;Legionella lansingensis;Burstein
GCA_001467825.1;Legionella londiniensis;Burstein
GCA_001467845.1;Legionella maceachernii;Burstein
GCA_001467865.1;Legionella moravica;Burstein
GCA_001467895.1;Legionella nautarum;Burstein
GCA_001467925.1;Legionella oakridgensis;Burstein
GCA_001467945.1;Legionella parisiensis;Burstein
GCA_001467955.1;Legionella quateirensis;Burstein
GCA_001467975.1;Legionella quinlivanii;Burstein
GCA_001468125.1;Legionella rubrilucens;Burstein
GCA_001468105.1;Legionella sainthelensi;Burstein
GCA_001468135.1;Legionella santicrucis;Burstein
GCA_001468025.1;Legionella shakespearei DSM 23087;Burstein
GCA_001468165.1;Legionella spiritensis;Burstein
GCA_001468005.1;Legionella steelei;Burstein
GCA_001468065.1;Legionella steigerwaltii;Burstein
GCA_001468035.1;Legionella tucsonensis;Burstein
GCA_001468085.1;Legionella waltersii;Burstein
GCA_001467535.1;Legionella worsleiensis;Burstein
GCA_900452395.1;Legionella beliardensis;gupta
GCA_002240035.1;Legionella clemsonensis;gupta
GCA_000162755.2;Legionella drancourtii;gupta
GCA_002776555.1;Legionella endosymbiont of Polyplax serrata PsAG;gupta
GCA_000621525.1;Legionella fairfieldensis;gupta
GCA_000953135.1;Legionella fallonii;gupta
GCA_900639875.1;Legionella impletisoli;gupta
GCA_000091785.1;Legionella longbeachae;gupta
GCA_000756815.1;Legionella massiliensis;gupta
GCA_900639915.1;Legionella nagasakiensis;gupta
GCA_000770585.1;Legionella norrlandica;gupta
GCA_900639985.1;Legionella rowbothamii;gupta
GCA_001465875.1;Legionella saoudiensis;gupta
GCA_003070665.1;Legionella taurinensis;gupta
GCA_000308315.1;Legionella tunisiensis;gupta
GCA_000701265.1;Legionella wadsworthii;gupta
GCA_900640115.1;Legionella yabuuchiae;gupta
GCA_001572745.1;Coxiella burnetii;gupta
GCA_000048645.1;Legionella pneumophila Paris;pneumo
GCA_000048665.1;Legionella pneumophila Lens;pneumo
GCA_000008485.1;Legionella pneumophila Philadelphia;pneumo
GCA_000092545.1;Legionella pneumophila Corby;pneumo
GCA_000092625.1;Legionella pneumophila Alcoy;pneumo
GCA_000306865.1;Legionella pneumophila Lorraine;pneumo
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