runscript_78Lp_V2.sh 949 Bytes
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#!/bin/bash
#$ -S /bin/bash
## name of the job to follow them
#$ -N runscript_V2
## name of the queue to be used
#$ -q E5-2670deb*,E5-2667v2*,E5-2667v4*
#$ -cwd
#$ -V
## where to put the log files (output and error) automatically generated by the cluster (different from the .log generated by DGINN)
## the dirs must exist before job is launched
#$ -o /home/mcariou/2021_legio/log/
#$ -e /home/mcariou/2021_legio/log/
module load trimal

/home/mcariou/2021_legio/phylolegio/script/3_make_PSIblast.sh ~/2021_legio/blastdb/phyloref_V2/phyloref_prot ~/2021_legio/genes/78Lp_uniprot.fasta ~/2021_legio/out_blastn/



/home/mcariou/2021_legio/phylolegio/script/4_parse_PSIblast.sh  ~/2021_legio/out_blastn/78Lp_uniprot_V2.psiblast  ~/2021_legio/phylolegio/doc/tabAss_V2.txt ~/2021_legio/fasta/78Lp_V2 ~/2021_legio/genes/78Lp_uniprot.fasta 0.0001 0.5 0.5 1


/home/mcariou/2021_legio/phylolegio/script/5_cat_aln_phy.sh ~/2021_legio/fasta/78Lp_V2/


# fin