From 696188c4e458b571e1ea83bba0af19b5a6fb3f50 Mon Sep 17 00:00:00 2001
From: mcariou <115-mcariou@users.noreply.gitbio.ens-lyon.fr>
Date: Thu, 14 Jan 2021 17:18:26 +0100
Subject: [PATCH] correction compte de Y dans covid_comp_dataset.Rnw
---
...hits_plusBatScreens_plusDGINN_20201014.txt | 334 ++++++++++++++++++
covid_comp_dataset.Rnw | 2 +-
covid_comp_dataset.pdf | Bin 132659 -> 134170 bytes
covid_comp_dataset.tex | 86 +++--
covid_comp_primate-Young-focus.pdf | Bin 191946 -> 191482 bytes
covid_comp_primate-Young-focus.tex | 97 ++---
figure/mondrianbats-1.pdf | Bin 4403 -> 4406 bytes
figure/mondrianbats-2.pdf | Bin 4404 -> 4411 bytes
figure/mondrianprimates-1.pdf | Bin 4531 -> 4531 bytes
figure/mondrianprimates-2.pdf | Bin 4502 -> 4502 bytes
figure/omegaM7M8-1.pdf | Bin 7138 -> 7138 bytes
figure/omegaM7M8_2-1.pdf | Bin 6938 -> 6938 bytes
figure/omegaM7M8_3-1.pdf | Bin 6986 -> 6986 bytes
figure/shiny-1.pdf | Bin 8183 -> 8183 bytes
figure/subsetbats-1.pdf | Bin 6309 -> 6471 bytes
figure/subsetbats-2.pdf | Bin 5513 -> 5542 bytes
figure/subsetbats-3.pdf | Bin 5501 -> 5500 bytes
figure/subsetprimates-1.pdf | Bin 6149 -> 6149 bytes
figure/subsetprimates-2.pdf | Bin 5851 -> 5851 bytes
figure/tablo-1.pdf | Bin 7198 -> 7130 bytes
figure/unnamed-chunk-8-1.pdf | Bin 4534 -> 4534 bytes
geneList_DGINN_full_primate_pos4.txt | 49 +++
22 files changed, 483 insertions(+), 85 deletions(-)
create mode 100644 COVID_PAMLresults_332hits_plusBatScreens_plusDGINN_20201014.txt
create mode 100644 geneList_DGINN_full_primate_pos4.txt
diff --git a/COVID_PAMLresults_332hits_plusBatScreens_plusDGINN_20201014.txt b/COVID_PAMLresults_332hits_plusBatScreens_plusDGINN_20201014.txt
new file mode 100644
index 0000000..7f24f4d
--- /dev/null
+++ b/COVID_PAMLresults_332hits_plusBatScreens_plusDGINN_20201014.txt
@@ -0,0 +1,334 @@
+Gene.name PreyGene PreyGene_JYname BaitShort list description other.names top40_posSeln Num.primate.seqs Alignment.length..nucleotides. Alignment.length..codons. whole.gene.dN.dS.model.0 total.tree.length total.dN.tree.length total.dS.tree.length p.value.M8vsM8a..raw. p.value.M8vsM8a..BH.corrected. pVal.M8vsM7 pVal.M8vsM7.adj pVal.M2vsM1 pVal.M2vsM1.adj X..codons.under.positive.selection dN.dS.of.positively.selected.codons Number.of.codons.with.BEB....0.9 Codons.under.positive.selection..BEB..0.9...alignment.position. cooper.batsGene cooper.batsGene_Ensembl_ID cooper.batsIsoform_Ensembl_ID cooper.batsSpecies cooper.batsReference_length.aa. cooper.batsPercent_analyzed cooper.batsAverage_dNdS cooper.batsMaximum_dS cooper.batsAverage_M7_tree cooper.batsAverage_M8_tree cooper.batsM7_log_likelihood cooper.batsM8_log_likelihood cooper.batsM7.M8_p_value cooper.batsM8a_log_likelihood cooper.batsM8.M8a_pvalue cooper.batsBEB_hits.pp.0.95. cooper.batsBEB_sites cooper.primates.Gene cooper.primates.Gene_Ensembl_ID cooper.primates.Isoform_Ensembl_ID cooper.primates.Species cooper.primates.Reference_length.aa. cooper.primates.Percent_analyzed cooper.primates.Average_dNdS cooper.primates.Maximum_dS cooper.primates.Average_M7_tree cooper.primates.Average_M8_tree cooper.primates.M7_log_likelihood cooper.primates.M8_log_likelihood cooper.primates.M7.M8_p_value cooper.primates.M8a_log_likelihood cooper.primates.M8.M8a_pvalue cooper.primates.BEB_hits.pp.0.95. cooper.primates.BEB_sites hawkins_Gene hawkins_Positive.Selection..M8vM8a.p.value hawkins_Positive.Selection..M8vM8a.FDR.corrected.p.value hawkins_Gene.Name.Alias hawkins_Connection.to.immunity.or.pathogens hawkins_Connection.to.reproduction hawkins_Connection.to.collagen hawkins_Connection.to.peroxisome hawkins_Gene.Description.for.Human.Ortholog..from.Genbank.GENE.database. CpGmask.numNT CpGmask.numAA CpGmask.overall.dN.dS CpGmask.total.tree.length CpGmask.total.dN.tree.length CpGmask.total.dS.tree.length CpGmask.pVal.M8vsM8a CpGmask.pVal.M8vsM8a.adj CpGmask.pVal.M8vsM7 CpGmask.pVal.M8vsM7.adj CpGmask.pVal.M2vsM1 CpGmask.pVal.M2vsM1.adj CpGmask.percent.sites.under.positive.selection CpGmask.dN.dS.of.selected.sites CpGmask.num.sites.with.BEB...0.9 CpGmask.which.sites.have.BEB...0.9 Omega_PamlM1M2 PosSel_PamlM1M2 PValue_PamlM1M2 NbSites_PamlM1M2 PSS_PamlM1M2 Omega_PamlM7M8 PosSel_PamlM7M8 PValue_PamlM7M8 NbSites_PamlM7M8 PSS_PamlM7M8 Omega_BppM1M2 PosSel_BppM1M2 PValue_BppM1M2 NbSites_BppM1M2 PSS_BppM1M2 Omega_BppM7M8 PosSel_BppM7M8 PValue_BppM7M8 NbSites_BppM7M8 PSS_BppM7M8 Omega_BUSTED PosSel_BUSTED PValue_BUSTED NbSites_MEME PSS_MEME File Name GeneSize dginn-primate_NbSpecies dginn-primate_omegaM0Bpp dginn-primate_omegaM0codeml dginn-primate_BUSTED dginn-primate_BUSTED.p.value dginn-primate_MEME.NbSites dginn-primate_MEME.PSS dginn-primate_BppM1M2 dginn-primate_BppM1M2.p.value dginn-primate_BppM1M2.NbSites dginn-primate_BppM1M2.PSS dginn-primate_BppM7M8 dginn-primate_BppM7M8.p.value dginn-primate_BppM7M8.NbSites dginn-primate_BppM7M8.PSS dginn-primate_codemlM1M2 dginn-primate_codemlM1M2.p.value dginn-primate_codemlM1M2.NbSites dginn-primate_codemlM1M2.PSS dginn-primate_codemlM7M8 dginn-primate_codemlM7M8.p.value dginn-primate_codemlM7M8.NbSites dginn-primate_codemlM7M8.PSS
+AAR2 AAR2 AAR2 M list26_COV_list4dataset2nonOrf AAR2 splicing factor homolog C20orf4|CGI-23 no 24 1155 385 0.10697 0.43296 0.0468 0.4372 0.90865 1 0.993 1 1 1 NA NA NA AAR2 ENSMLUG00000011977.1 ENSMLUT00000011973.1 14 385 98.44155844 0.121314111 0.2847 1.07113 1.07113 -3321.28142 -3321.28143 0.99999 NA NA NA AAR2 ENSG00000131043.11 ENST00000373932.3 17 385 99.22077922 0.098793106 0.1997 0.37743 0.37786 -2314.613474 -2314.58797 0.97481848 NA NA NA AAR2 0.29088992 1 NA NA NA 957 319 0.13822 0.2348 0.031 0.2242 1 1 1 1 1 1 NA NA NA 0.136764724125588 N 1 NA 0.136764724125588 N 0.988919842187178 NA 0.136764724125588 N 0.999999801184023 NA 0.136764724125588 N 0.559871008031229 NA 0.136764724125588 N 1 0 AAR2_sequences_filtered_longestORFs_mafft_mincov_prank AAR2_all 601 24 0.138510454262 0.105 N 0.9333 1 264 N 0.9999992818091265 0 na N 0.9999999748811209 0 na N 1.0 0 na N 1.0 0 na
+AASS AASS AASS M list26_COV_list4dataset2nonOrf aminoadipate-semialdehyde synthase LKR/SDH|LKRSDH|LORSDH no 23 2781 927 0.15824 0.42179 0.0559 0.3531 0.097344 0.367425882352941 0.0774 0.305647222222222 0.26252 1 2.274 2.39714 2 5_R_0.927,777_D_0.910 AASS ENSMLUG00000015957.2 ENSMLUT00000015979.2 9 819 100 0.141477444 0.3292 0.90534 0.91599 -6669.360229 -6664.828436 0.010761364 -6667.008435 0.036792348 NA NA NA NA NA NA NA NA NA NA NA NA NA NA AASS 0.075255753 0.819592694 NA NA NA 2364 788 0.18941 0.27822 0.0426 0.2248 1 1 1 1 0.33201 1 NA NA NA 0.161393995886974 N 0.262518689864661 NA 0.161393995886974 N 0.0735855208633639 NA 0.161393995886974 N 0.639759830173362 NA 0.161393995886974 N 0.05990067325007 NA 0.161393995886974 N 0.9263 4 390, 676, 757, 892 AASS_sequences_filtered_longestORFs_mafft_mincov_prank AASS_all 1460 24 0.146308728224 0.136 N 0.4684 8 345, 464, 840, 841, 1194, 1235, 1238, 1375 N 0.9999992149344861 0 na N 0.9999999473147924 0 na N 1.0 0 na N 0.8344353586953767 0 na
+AATF AATF AATF nsp8 list24_COV_list2nonOrf apoptosis antagonizing transcription factor BFR2|CHE-1|CHE1|DED no 24 1707 569 0.32081 0.5717 0.1173 0.3657 0.34348 0.796625301204819 0.41047 0.908223850574713 0.70523 1 NA NA NA AATF ENSMLUG00000014754.2 ENSMLUT00000023634.1 11 509 88.60510806 0.127438902 0.3589 0.88821 0.89052 -3789.10586 -3788.867496 0.787915838 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AATF 0.111335036 1 NA NA NA 1350 450 0.32933 0.3587 0.0753 0.2285 1 1 1 1 1 1 NA NA NA 0.324900010831607 N 0.70522879281672 NA 0.324900010831607 N 0.407786714436059 NA 0.324900010831607 N 0.884152148074944 NA 0.324900010831607 N 0.648142313470849 NA 0.324900010831607 N 1 2 147, 215 AATF_sequences_filtered_longestORFs_mafft_mincov_prank AATF_all 814 24 0.272118991707 0.273 Y 0.0000 10 7, 133, 236, 291, 307, 426, 548, 549, 602, 720 N 0.9999990153742446 0 na N 0.999382674275042 0 na N 1.0 0 na N 0.2615839537910964 0 na
+ABCC1 ABCC1 ABCC1 orf9c list24_COV_list2nonOrf ATP binding cassette subfamily C member 1 ABC29|ABCC|GS-X|MRP|MRP1 yes 23 4596 1532 0.09711 0.7375 0.0836 0.8607 0.00015576 0.0028556 0.00017542 0.003376835 0.0018236 0.02808344 0.069 14.34062 2 927_H_0.937,1047_C_0.996 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABCC1 0.989782371 1 NA NA NA 3117 1039 0.11016 0.38354 0.049 0.445 1 1 1 1 1 1 NA NA NA 0.128331584899923 N 0.999957000924482 NA 0.128331584899923 Y 0.000126668641910874 1 1047 0.128331584899923 N 0.999998934849485 NA 0.128331584899923 Y 0.000138672645668392 4 368, 1047, 373, 927 0.128331584899923 Y 0 12 206, 219, 227, 228, 460, 758, 852, 863, 1047, 1184, 1199, 1466 ABCC1_sequences_filtered_longestORFs_mafft_mincov_prank ABCC1_all 2124 19 0.117080897867 0.075 Y 0.0000 16 272, 293, 307, 437, 599, 606, 685, 779, 784, 863, 1175, 1257, 1272, 1291, 1394, 1888 N 0.9999991891657932 0 na Y 0.0021604753086363598 2 1115, 1257 N 0.9841273200556575 0 na N 0.1394568562148886 0 na
+ACAD9 ACAD9 ACAD9 orf9c list24_COV_list2nonOrf acyl-CoA dehydrogenase family member 9 NPD002 no 24 1875 625 0.27034 0.70758 0.1376 0.509 1 1 1 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ACAD9 ENSG00000177646.18 ENST00000505192.5 18 70 95.71428571 0.788848042 0.1923 0.87275 0.87275 -600.730687 -600.730723 0.999964001 NA NA NA NA NA NA NA NA 1362 454 0.45958 0.45559 0.1151 0.2505 0.32167 1 0.52503 1 0.61198 1 NA NA NA 0.33303472552583 na NA NA 0.33303472552583 na NA NA 0.33303472552583 N 0.999996642233962 NA 0.33303472552583 N 0.892289877121333 NA 0.33303472552583 na NA 0 ACAD9_sequences_filtered_longestORFs_mafft_mincov_prank ACAD9_all 922 23 0.246774938393 0.207 Y 0.0000 15 4, 22, 45, 190, 305, 413, 660, 716, 724, 738, 773, 854, 857, 871, 878 N 0.9999987144691737 0 na N 0.3262991387891095 0 na N 1.0 0 na N 0.09053669869792183 0 na
+ACADM ACADM ACADM M list26_COV_list4dataset2nonOrf acyl-CoA dehydrogenase medium chain ACAD1|MCAD|MCADH yes 24 1365 455 0.24077 0.47772 0.0949 0.3941 0.00028162 0.004336948 0.0012159 0.0161421206896552 0.0016625 0.0266692708333333 1.072 7.58852 4 6_G_0.924,89_T_0.994,264_I_0.907,316_V_0.995 ACADM ENSMLUG00000003015.2 ENSMLUT00000003015.2 4 447 99.32885906 0.179970289 0.1138 0.18347 0.232 -2134.919661 -2125.428875 7.55e-05 -2134.103026 3.11e-05 7 C97, T98, Q99, H100, R22, K88, E92 ACADM ENSG00000117054.13 ENST00000541113.5 17 386 88.86010363 0.440133164 0.1529 0.40184 0.43711 -2135.141647 -2128.596922 0.001437679 -2135.139747 0.000297567 2 T53, V247 ACADM 0.001706146 0.082051205 NA NA NA 1200 400 0.29779 0.35519 0.0796 0.2672 0.39386 1 0.67628 1 0.69525 1 NA NA NA 0.308998465467841 Y 0.00517880989037739 2 89, 316 0.308998465467841 Y 0.00392979113823652 2 89, 316 0.308998465467841 Y 0.00976147221807512 2 89, 316 0.308998465467841 Y 0.000302317282271308 2 89, 316 0.308998465467841 Y 6e-04 3 75, 138, 316 ACADM_sequences_filtered_longestORFs_mafft_mincov_prank ACADM_all 924 25 0.199060639609 0.153 Y 0.0000 12 375, 465, 479, 485, 552, 561, 605, 623, 687, 739, 839, 853 Y 0.037704182279039634 0 Y 0.00023100528073301762 3 479, 687, 739 Y 0.033273300180114804 0 Y 0.000697505610900003 2 479, 739
+ACSL3 ACSL3 ACSL3 nsp7 list24_COV_list2nonOrf acyl-CoA synthetase long chain family member 3 ACS3|FACL3|LACS 3|LACS3|PRO2194 no 22 2163 721 0.0929 0.3698 0.0344 0.3705 1 1 1 1 1 1 NA NA NA ACSL3 ENSMLUG00000010952.2 ENSMLUT00000010950.2 6 721 99.58391123 0.076280564 0.4619 0.68965 0.68965 -4861.986231 -4861.986282 0.999949001 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ACSL3 0.885467572 1 NA NA NA 1806 602 0.12383 0.25536 0.0304 0.2453 0.33716 1 0.51788 1 0.63134 1 NA NA NA 0.103889938940189 N 0.999722038638894 NA 0.103889938940189 N 0.932307111312457 NA 0.103889938940189 N 0.999423558954228 NA 0.103889938940189 Y 9.204712286693e-05 17 230, 425, 458, 268, 270, 143, 399, 49, 273, 434, 435, 149, 117, 54, 534, 153, 542 0.103889938940189 Y 0 2 434, 542 ACSL3_sequences_filtered_longestORFs_mafft_mincov_prank ACSL3_all 850 24 0.086446706405 0.079 Y 0.0011 5 302, 326, 333, 444, 600 N 0.9999996550341761 0 na N 0.8741931893713637 0 na N 1.0 0 na N 0.33823985668758066 0 na
+ADAM9 ADAM9 ADAM9 orf8 list25_COV_list3dataset2orf ADAM metallopeptidase domain 9 CORD9|MCMP|MDC9|Mltng no 24 2460 820 0.23426 0.32078 0.0577 0.2461 0.78746 1 0.91009 1 0.96496 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2169 723 0.23717 0.23665 0.0439 0.1852 1 1 1 1 1 1 NA NA NA 0.253540462367898 N 0.964957712352569 NA 0.253540462367898 N 0.918376354642308 NA 0.253540462367898 N 0.943452925257604 NA 0.253540462367898 N 0.439011085301166 NA 0.253540462367898 Y 0.0275 2 67, 626 ADAM9_sequences_filtered_longestORFs_mafft_mincov_prank ADAM9_all 1309 24 0.240209874933 0.220 Y 0.0000 12 167, 329, 488, 655, 684, 996, 1078, 1179, 1186, 1197, 1227, 1238 N 0.4230114312876876 0 na Y 0.0006544770263830813 5 152, 329, 684, 1078, 1238 N 0.14255890446757777 0 na Y 0.01818787710445871 2 152, 1078
+ADAMTS1 ADAMTS1 ADAMTS1 orf8 list25_COV_list3dataset2orf ADAM metallopeptidase with thrombospondin type 1 motif 1 C3-C5|METH1 no 24 2910 970 0.11735 0.56648 0.0621 0.5288 1 1 1 1 1 1 NA NA NA ADAMTS1 ENSMLUG00000011098.2 ENSMLUT00000011104.2 5 965 96.16580311 0.081350858 0.4665 0.59051 0.59114 -5846.284175 -5846.013643 0.762973484 NA NA NA ADAMTS1 ENSG00000154734.14 ENST00000517452.1 19 128 94.53125 0.068152955 0.1427 0.27036 0.27394 -690.162298 -690.011798 0.86027773 NA NA NA ADAMTS1 1 1 NA NA NA 2049 683 0.08577 0.29926 0.0259 0.3019 1 1 1 1 1 1 NA NA NA 0.128474596906201 N 1 NA 0.128474596906201 N 0.99998400012804 NA 0.128474596906201 N 0.99999994296377 NA 0.128474596906201 Y 0.0489027518866428 5 232, 25, 225, 20, 173 0.128474596906201 N 0.9754 3 71, 218, 232 ADAMTS1_sequences_filtered_longestORFs_mafft_mincov_prank ADAMTS1_all 975 24 0.127321473254 0.120 N 0.8764 9 20, 167, 213, 223, 237, 361, 475, 673, 915 N 0.9999998170205967 0 na N 0.4285448408453565 0 na N 1.0 0 na N 0.5615805837295651 0 na
+ADCK4 COQ8B ADCK4 M list26_COV_list4dataset2nonOrf coenzyme Q8B ADCK4|NPHS9 no 24 1641 547 0.18011 0.65301 0.1015 0.5636 0.20476 0.577443795620438 0.3057 0.754451923076923 0.65529 1 NA NA NA COQ8B ENSMLUG00000000210.2 ENSMLUT00000000210.2 11 533 99.43714822 0.15920295 0.3561 1.15164 1.16695 -4815.306353 -4812.452234 0.05760655 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1197 399 0.2012 0.4348 0.0751 0.3734 1 1 1 1 1 1 NA NA NA 0.247706119486338 N 0.655252251952994 NA 0.247706119486338 N 0.299558965801081 NA 0.247706119486338 N 0.742758108752027 NA 0.247706119486338 N 0.394721959222416 NA 0.247706119486338 Y 0 10 10, 100, 102, 108, 109, 116, 121, 131, 379, 417 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
+AES TLE5 AES nsp13 list26_COV_list4dataset2nonOrf amino-terminal enhancer of split AES-1|AES-2|ESP1|GRG|GRG5|Grg-5|TLE5 no 23 795 265 0.03715 0.65866 0.034 0.9163 1 1 1 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AES 1 1 NA NA NA 528 176 0.03919 0.35186 0.0199 0.5084 0.33912 1 0.61225 1 1 1 NA NA NA 0.0139866372650217 N 0.999999000000616 NA 0.0139866372650217 N 0.642349327141686 NA 0.0139866372650217 N 0.999999984141937 NA 0.0139866372650217 N 0.883830405627996 NA 0.0139866372650217 N 0.3366 0 TLE5_sequences_filtered_longestORFs_D410gp2_prank TLE5_410-2 426 9 0.177035832705 0.224 Y 0.0040 1 426 N 0.13619801249268904 0 na N 0.09212218803320409 0 na N 0.05596661089964485 0 na Y 0.042214141814108 0
+AGPS AGPS AGPS nsp7 list26_COV_list4dataset2nonOrf alkylglycerone phosphate synthase ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY|RCDP3 no 23 2082 694 0.13686 0.29057 0.0366 0.2674 0.50248 1 0.33891 0.804883333333333 0.79861 1 NA NA NA AGPS ENSMLUG00000005113.2 ENSMLUT00000005117.2 3 631 99.52456418 0.137430765 0.0486 0.06106 0.09496 -2749.523522 -2741.01313 0.000201365 -2749.441895 4.03e-05 1 C36 AGPS ENSG00000018510.13 ENST00000637633.1 15 543 97.053407 0.114573435 0.0962 0.2451 0.25094 -2828.579642 -2825.756491 0.05941842 NA NA NA AGPS 1.68e-06 0.000384393 alkylglycerone phosphate synthase NA NA NA Yes This gene is a member of the FAD-binding oxidoreductase/transferase type 4 family. It encodes a protein that catalyzes the second step of ether lipid biosynthesis in which acyl-dihydroxyacetonephosphate (DHAP) is converted to alkyl-DHAP by the addition of a long chain alcohol and the removal of a long-chain acid anion. The protein is localized to the inner aspect of the peroxisomal membrane and requires FAD as a cofactor. Mutations in this gene have been associated with rhizomelic chondrodysplasia punctata, type 3 and Zellweger syndrome. 1707 569 0.11542 0.16958 0.0199 0.1725 0.39736 1 0.63927 1 0.69903 1 NA NA NA 0.142971070058015 na NA NA 0.142971070058015 na NA NA 0.142971070058015 N 0.994891726308828 NA 0.142971070058015 Y 0.0138672377266735 42 2, 4, 6, 8, 11, 21, 405, 406, 154, 30, 31, 417, 166, 39, 40, 424, 170, 425, 50, 51, 53, 54, 439, 440, 57, 58, 186, 60, 61, 441, 442, 65, 321, 577, 197, 71, 200, 201, 461, 80, 104, 108 0.142971070058015 na NA 0 AGPS_sequences_filtered_longestORFs_mafft_mincov_prank AGPS_all 1635 24 0.092175503676 0.150 N 0.9783 5 629, 692, 695, 710, 855 N 0.9999954831661999 0 na Y 0.02890632158493913 10 836, 843, 856, 861, 867, 871, 872, 887, 935, 984 N 1.0 0 na N 0.5147880584564917 0 na
+AKAP8 AKAP8 AKAP8 nsp12 list26_COV_list4dataset2nonOrf A-kinase anchoring protein 8 AKAP 95|AKAP-8|AKAP-95|AKAP95 no 24 2079 693 0.2358 0.77107 0.1348 0.5717 0.28448 0.693194936708861 0.086684 0.330429108910891 0.5762 1 10.642 1.34413 0 noneOver_0.9 NA NA NA NA NA NA NA NA NA NA NA NA NA AKAP8 ENSG00000105127.8 ENST00000599883.1 17 134 89.55223881 1.423143788 0.1175 0.6778 0.83102 -975.587369 -957.555979 1.48e-08 -975.425749 2.26e-09 6 R48, A114, Q83, A101, P120, R122 NA NA NA NA NA 1323 441 0.25814 0.36183 0.0711 0.2754 0.0011182 0.0195685 0.0026395 0.0502846666666667 0.0050815 0.092554 2.027 6.19713 4 369_G_0.920,406_P_0.945,437_I_0.977,438_P_0.901 0.265060757669053 N 0.637083212546758 NA 0.265060757669053 N 0.106747184705784 NA 0.265060757669053 N 0.99999674961219 NA 0.265060757669053 N 0.799485700743097 NA 0.265060757669053 N 1 5 61, 563, 677, 689, 690 AKAP8_sequences_filtered_longestORFs_mafft_mincov_prank AKAP8_all 1207 24 0.207112322942 0.172 N 0.1358 7 240, 412, 1038, 1055, 1114, 1204, 1205 N 0.9999987441795993 0 na N 0.5888118660773007 0 na N 1.0 0 na N 0.18562996914119032 0 na
+AKAP8L AKAP8L AKAP8L M list26_COV_list4dataset2nonOrf A-kinase anchoring protein 8 like HA95|HAP95|NAKAP|NAKAP95 no 24 1953 651 0.08781 0.41593 0.0403 0.4594 0.37051 0.84406124260355 0.34764 0.806273493975904 1 1 NA NA NA AKAP8L ENSMLUG00000005469.2 ENSMLUT00000005479.2 10 645 92.55813953 0.104953817 0.2979 0.82808 0.83009 -4639.745585 -4638.897914 0.428411541 NA NA NA AKAP8L ENSG00000011243.17 ENST00000595067.1 18 161 85.0931677 0.276677834 0.1594 0.49321 0.60807 -927.328511 -908.930064 1.02e-08 -927.327428 1.31e-09 4 V33, V37, S38, G135 NA NA NA NA NA 1389 463 0.06953 0.23605 0.0192 0.276 1 1 1 1 1 1 NA NA NA 0.109957533520203 N 0.907643135692018 NA 0.109957533520203 N 0.266899258705472 NA 0.109957533520203 N 0.827118688473752 NA 0.109957533520203 Y 0.0268074259413681 2 649, 116 0.109957533520203 N 0.9731 0 AKAP8L_sequences_filtered_longestORFs_mafft_mincov_prank AKAP8L_all 1561 24 0.103745703410 0.093 N 0.5401 4 255, 281, 512, 1312 N 0.9999988312790729 0 na Y 0.0004578781311533793 3 281, 338, 1361 N 0.7882026910928299 0 na N 0.12963920929034237 0 na
+AKAP9 AKAP9 AKAP9 nsp13 list26_COV_list4dataset2nonOrf A-kinase anchoring protein 9 AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO yes 22 11736 3912 0.35363 0.42129 0.0949 0.2682 6.8311e-05 0.0016437334375 4.9129e-05 0.0011821665625 0.000354 0.008518125 14.765 1.92832 2 329_A_0.913,1061_I_0.924 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AKAP9 0.717684616 1 NA NA NA 10671 3557 0.37099 0.33276 0.0769 0.2072 8.5402e-05 0.00298907 7.0443e-05 0.003013395 0.00044058 0.01696233 11.357 2.35214 3 981_I_0.976,1139_E_0.962,1231_T_0.905 0.371478396053583 na NA NA 0.371478396053583 na NA NA 0.371478396053583 N 0.394500839645581 NA 0.371478396053583 Y 0.00143295679702617 0 0.371478396053583 na NA 0 AKAP9_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank AKAP9_all_part1 5475 23 0.366459275969 0.276 Y 0.0000 0 na Y 2.0041988652705565e-58 2 2215, 2889 na na 0 na na na 0 na na na 0 na
+ALG11 ALG11 ALG11 nsp4 list26_COV_list4dataset2nonOrf ALG11, alpha-1,2-mannosyltransferase CDG1P|GT8 no 24 1479 493 0.27763 0.40966 0.0809 0.2912 0.007819 0.0627148958333333 0.0090937 0.0744909468085106 0.029234 0.233168571428571 1.814 4.73998 2 6_R_0.921,9_C_0.932 ALG11 ENSMLUG00000028693.1 ENSMLUT00000026687.1 13 493 90.87221095 0.153683232 0.6891 1.58193 1.58193 -4768.261863 -4768.261909 0.999954001 NA NA NA ALG11 ENSG00000253710.2 ENST00000521508.1 18 493 94.92900609 0.167181829 0.1021 0.28339 0.2845 -2735.721105 -2734.190058 0.216309073 NA NA NA ALG11 1 1 NA NA NA 1296 432 0.38277 0.28323 0.0665 0.1737 0.00016849 0.00498989615384615 0.00067321 0.0172790566666667 0.00083815 0.0248221346153846 2.029 8.5267 3 2_R_0.991,5_C_0.993,321_Y_0.921 0.300819320418758 Y 0.0292285882209734 0 0.300819320418758 Y 0.00897555956029945 0 0.300819320418758 N 0.153120755964799 NA 0.300819320418758 N 0.0723022450085215 NA 0.300819320418758 N 1 2 6, 9 ALG11_sequences_filtered_longestORFs_mafft_mincov_prank ALG11_all 1025 24 na na na na 0 na na na 0 na na na 0 na na na 0 na na na 0 na
+ALG5 ALG5 ALG5 orf3a list25_COV_list3dataset2orf ALG5, dolichyl-phosphate beta-glucosyltransferase bA421P11.2 no 22 975 325 0.19352 0.43688 0.0648 0.3349 0.026835 0.1483075 0.042491 0.205252530864198 0.090111 0.5392625 0.916 6.16754 1 3_P_0.943 ALG5 ENSMLUG00000014698.2 ENSMLUT00000028515.1 4 329 87.23404255 0.22019498 1.6961 1.54406 12.28528 -2035.78195 -2008.520181 1.45e-12 -2034.445957 5.99e-13 11 N192, S195, S197, C198, S200, F201, F202, C203, I204, E205, Q207 ALG5 ENSG00000120697.8 ENST00000443765.5 18 295 98.98305085 0.174781993 0.1284 0.40079 0.41228 -1862.583277 -1860.189329 0.091268643 NA NA NA NA NA NA NA NA 792 264 0.15885 0.2645 0.0353 0.2224 1 1 1 1 0.99997 1 NA NA NA 0.226502806307371 N 0.0879563157226482 NA 0.226502806307371 Y 0.0486373755208279 1 3 0.226502806307371 N 0.356893410380505 NA 0.226502806307371 N 0.18494319314793 NA 0.226502806307371 N 1 1 3 ALG5_sequences_filtered_longestORFs_mafft_mincov_prank ALG5_all 906 24 0.212882633036 0.206 N 1.0000 4 156, 302, 341, 633 N 0.9999962240602492 0 na Y 0.0018432526891259207 2 156, 302 N 0.9990004998331715 0 na Y 0.007642733131900322 2 156, 302
+ALG8 ALG8 ALG8 orf9c list26_COV_list4dataset2nonOrf ALG8, alpha-1,3-glucosyltransferase CDG1H|PCLD3 no 24 1584 528 0.23611 0.39771 0.0654 0.2771 0.01014 0.0751416346153846 0.021603 0.134147661290323 0.044483 0.311381 0.606 7.79934 1 115_T_0.949 ALG8 ENSMLUG00000014622.2 ENSMLUT00000014631.2 10 526 99.23954373 0.154665671 0.2658 0.71391 0.71672 -3972.78088 -3971.764719 0.361981925 NA NA NA ALG8 ENSG00000159063.12 ENST00000615266.4 16 468 97.86324786 0.244378089 0.1741 0.4149 0.4168 -2961.67908 -2957.461286 0.014731106 -2961.164866 0.00649648 3 R451, Q164, V461 ALG8 0.638317017 1 NA NA NA 1398 466 0.30928 0.31283 0.0604 0.1953 0.0016322 0.02244275 0.0067773 0.0899745 0.0076207 0.112844980769231 0.739 12.10586 2 93_T_0.990,276_S_0.936 0.213836285991962 Y 0.0444811399943023 0 0.213836285991962 Y 0.0215727140775287 0 0.213836285991962 N 0.146996355024333 NA 0.213836285991962 Y 0.0468777101632007 1 115 0.213836285991962 Y 0.0073 4 4, 115, 322, 399 ALG8_sequences_filtered_longestORFs_mafft_mincov_prank ALG8_all 1628 23 0.200855712093 0.238 Y 0.0000 8 761, 889, 1029, 1043, 1046, 1138, 1496, 1501 N 0.999998840760544 0 na N 0.9931549869921299 0 na N 0.8676212564860656 0 na N 0.5363330226131426 0 na
+ANO6 ANO6 ANO6 M list24_COV_list2nonOrf anoctamin 6 BDPLT7|SCTS|TMEM16F no 24 2799 933 0.12803 0.3476 0.0389 0.3035 0.045415 0.215355853658537 0.11244 0.397397706422018 0.14061 0.694036538461539 0.79 4.00199 3 450_V_0.984,808_A_0.915,866_I_0.967 ANO6 ENSMLUG00000007076.2 ENSMLUT00000007096.2 8 841 97.97859691 0.09941969 0.4679 1.0014 1.00509 -6738.651994 -6737.916199 0.479124404 NA NA NA ANO6 ENSG00000177119.15 ENST00000441606.2 15 893 91.04143337 0.08014419 0.1228 0.25956 0.26133 -4546.756228 -4544.092163 0.069664459 NA NA NA ANO6 0.693976732 1 NA NA NA 2394 798 0.11791 0.20692 0.0227 0.1926 0.89963 1 0.94901 1 0.9864 1 NA NA NA 0.128446590764281 N 0.140626196164608 NA 0.128446590764281 N 0.131105360554295 NA 0.128446590764281 N 0.179627911776425 NA 0.128446590764281 Y 1.963554787635e-06 4 160, 450, 808, 866 0.128446590764281 N 0.9796 3 450, 808, 866 ANO6_sequences_filtered_longestORFs_mafft_mincov_prank ANO6_all 2189 24 0.113299720035 0.120 Y 0.0204 0 na N 0.999999618935435 0 na Y 5.110260093597033e-07 9 601, 883, 887, 940, 1066, 1115, 1761, 1785, 2099 N 0.9084640160674635 0 na N 0.1510718088364588 0 na
+AP2A2 AP2A2 AP2A2 nsp10 list24_COV_list2nonOrf adaptor related protein complex 2 subunit alpha 2 ADTAB|CLAPA2|HIP-9|HIP9|HYPJ no 23 2826 942 0.0316 0.62439 0.0251 0.7931 1 1 1 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2A2 0.95561292 1 NA NA NA 1776 592 0.03047 0.26984 0.0109 0.357 1 1 1 1 0.99999 1 NA NA NA 0.0354827480081256 na NA NA 0.0354827480081256 na NA NA 0.0354827480081256 N 0.99999934025458 NA 0.0354827480081256 Y 0.00244646129802484 2 654, 799 0.0354827480081256 na NA 0 AP2A2_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank AP2A2_all_part1 1531 24 0.027643575412 0.029 Y 0.0000 4 88, 420, 424, 1090 N 0.9999998315543195 0 na Y 1.8095362296896085e-06 3 1017, 1091, 1368 N 1.0 0 na Y 0.0496379309806638 0
+AP2M1 AP2M1 AP2M1 nsp10 list24_COV_list2nonOrf adaptor related protein complex 2 subunit mu 1 AP50|CLAPM1|mu2 no 23 1308 436 0.00997 0.22811 0.0031 0.3064 1 1 1 1 0.99964 1 NA NA NA AP2M1 ENSMLUG00000013541.2 ENSMLUT00000013545.2 11 442 99.32126697 0.009907453 0.2441 0.42519 0.46649 -2586.621611 -2570.307583 8.22e-08 -2576.454425 0.000454494 1 P192 AP2M1 ENSG00000161203.13 ENST00000621863.4 3 435 98.3908046 0.098695777 0.155 0.17927 0.17927 -2042.490635 -2042.490702 0.999933002 NA NA NA AP2M1 0.973065434 1 NA NA NA 1017 339 1e-04 0.12605 0 0.1923 1 1 1 1 0.99883 1 NA NA NA 0.013412084052365 N 0.999638065513872 NA 0.013412084052365 N 0.999641064432673 NA 0.013412084052365 N 0.999999999518423 NA 0.013412084052365 N 0.99999204066701 NA 0.013412084052365 N 0.1054 0 AP2M1_sequences_filtered_longestORFs_mafft_mincov_prank AP2M1_all 584 24 0.072008517084 0.060 Y 0.0120 1 368 N 0.9999990882533503 0 na N 0.9999999822571227 0 na N 0.30635828375793595 0 na N 1.0 0 na
+AP3B1 AP3B1 AP3B1 E list24_COV_list2nonOrf adaptor related protein complex 3 subunit beta 1 ADTB3|ADTB3A|HPS|HPS2|PE no 23 3285 1095 0.15982 0.32386 0.0465 0.2908 0.15456 0.491781818181818 0.3584 0.812938823529412 0.56919 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP3B1 ENSG00000132842.13 ENST00000522901.1 18 154 93.50649351 0.248401132 0.1666 0.51825 0.70943 -967.479082 -941.687639 6.29e-12 -966.682479 1.55e-12 3 S144, L145, L148 NA NA NA NA NA 2955 985 0.18044 0.26164 0.0413 0.2289 0.78874 1 0.87325 1 0.96811 1 NA NA NA 0.185279628311492 N 0.521727425944226 NA 0.185279628311492 N 0.320689472323777 NA 0.185279628311492 N 0.494167649914481 NA 0.185279628311492 Y 0.0108799226753283 1 808 0.185279628311492 Y 7e-04 5 74, 75, 79, 88, 92 AP3B1_sequences_filtered_longestORFs_mafft_mincov_prank AP3B1_all 2158 24 0.165149043217 0.158 N 1.0000 9 593, 744, 746, 869, 895, 952, 999, 1425, 1549 N 0.9999998548792169 0 na Y 0.01524795293177966 3 422, 898, 972 N 0.8967304174978962 0 na N 0.13655879834501614 0 na
+ARF6 ARF6 ARF6 nsp15 list26_COV_list4dataset2nonOrf ADP ribosylation factor 6 - no 23 528 176 0.00829 0.16737 0.0024 0.2869 1 1 1 1 0.9997 1 NA NA NA ARF6 ENSMLUG00000010869.1 ENSMLUT00000010859.1 14 176 94.31818182 0.025085904 0.1572 0.29711 0.33603 -890.50429 -887.871119 0.071850263 NA NA NA ARF6 ENSG00000165527.6 ENST00000298316.6 18 176 98.29545455 0.00434569 0.1225 0.16533 0.16533 -826.751641 -826.751992 0.999649062 NA NA NA ARF6 0.085998489 0.881444321 NA NA NA 372 124 0.02028 0.0951 0.0034 0.1664 1 1 1 1 0.99992 1 NA NA NA 0.0086920662091696 N 0.999698045597376 NA 0.0086920662091696 N 0.999634066969844 NA 0.0086920662091696 N 0.999999999986926 NA 0.0086920662091696 N 0.999993839463618 NA 0.0086920662091696 N 1 0 ARF6_sequences_filtered_longestORFs_D146gp2_prank ARF6_146-2 175 17 0.031678100936 0.024 N 0.9989 0 na N 0.9999999868317674 0 na N 0.999990031600195 0 na N 1.0 0 na N 0.9990004998333987 0 na
+ARL6IP6 ARL6IP6 ARL6IP6 orf3a list25_COV_list3dataset2orf ADP ribosylation factor like GTPase 6 interacting protein 6 AIP-6|AIP6|PFAAP1 no 23 681 227 0.32853 0.56407 0.1176 0.358 0.42489 0.928785310734463 0.57486 1 0.7298 1 NA NA NA ARL6IP6 ENSMLUG00000023268.1 ENSMLUT00000029257.1 9 227 93.39207048 0.231315309 0.3793 1.0818 1.0818 -1885.798414 -1885.79842 0.999994 NA NA NA ARL6IP6 ENSG00000177917.10 ENST00000425034.5 13 38 92.10526316 0.190198357 0.1732 0.26435 0.26406 -188.146347 -188.139579 0.993254851 NA NA NA ARL6IP6 1 1 NA NA NA 447 149 0.4519 0.35247 0.0871 0.1927 0.40967 1 0.6991 1 0.71817 1 NA NA NA 0.332316816833443 N 0.729801280785386 NA 0.332316816833443 N 0.574925966722713 NA 0.332316816833443 N 0.955067042951566 NA 0.332316816833443 N 0.630658242727074 NA 0.332316816833443 N 1 0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
+ATE1 ATE1 ATE1 nsp8 list24_COV_list2nonOrf arginyltransferase 1 - yes 24 1557 519 0.23406 0.42514 0.0736 0.3146 0.0024879 0.0252063552631579 0.0024351 0.0253382027027027 0.010541 0.106796973684211 1.571 4.4187 1 173_V_0.977 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATE1 1 1 NA NA NA 1284 428 0.31286 0.26291 0.0555 0.1774 0.46648 1 0.65679 1 0.7674 1 NA NA NA 0.240436820367874 Y 0.0105406296348645 1 173 0.240436820367874 Y 0.00238428974459939 1 173 0.240436820367874 Y 0.0191366161519791 1 173 0.240436820367874 Y 0.00359132381591405 1 173 0.240436820367874 N 1 1 173 ATE1_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank ATE1_all_part2 4516 23 0.216828954410 0.243 Y 0.0000 8 622, 623, 899, 1437, 1459, 1509, 3392, 3414 N 0.5004846977749202 0 na Y 0.03708616346868175 1 1459 Y 8.916695916049465e-05 6 622, 623, 625, 627, 628, 1459 na na 0 na
+ATP13A3 ATP13A3 ATP13A3 nsp6 list24_COV_list2nonOrf ATPase 13A3 AFURS1 no 23 3681 1227 0.14578 0.37782 0.0489 0.3357 0.06395 0.267616847826087 0.17447 0.525615234375 0.211 0.93789540229885 0.081 16.27142 3 1050_Q_0.963,1116_I_0.936,1158_L_0.901 ATP13A3 ENSMLUG00000014164.2 ENSMLUT00000014172.2 11 1227 99.75550122 0.13286808 0.2049 0.59575 0.59732 -8654.442737 -8653.486754 0.38443406 NA NA NA ATP13A3 ENSG00000133657.14 ENST00000619199.4 13 702 97.57834758 0.089688782 0.1611 0.35125 0.35206 -4002.934816 -4001.403875 0.216332003 NA NA NA ATP13A3 0.649032564 1 NA NA NA 3153 1051 0.19374 0.26814 0.0421 0.2172 0.43893 1 0.66813 1 0.74099 1 NA NA NA 0.15473642345216 N 0.210963319890188 NA 0.15473642345216 N 0.183089165799449 NA 0.15473642345216 N 0.937677409922831 NA 0.15473642345216 Y 0.000376275680809379 6 96, 1158, 617, 1050, 1116, 1182 0.15473642345216 N 1 4 157, 617, 1050, 1158 ATP13A3_sequences_filtered_longestORFs_mafft_mincov_prank ATP13A3_all 1667 24 0.144099275342 0.141 N 0.5529 3 115, 157, 1530 N 0.49438735782234966 0 na Y 7.555004772586708e-10 16 31, 88, 99, 102, 127, 652, 1139, 1148, 1149, 1150, 1156, 1157, 1266, 1273, 1315, 1316 N 0.43127902868882784 0 na Y 0.03350703038270436 3 1149, 1150, 1316
+ATP1B1 ATP1B1 ATP1B1 M list26_COV_list4dataset2nonOrf ATPase Na+/K+ transporting subunit beta 1 ATP1B no 24 912 304 0.11853 0.30643 0.0338 0.2853 0.24838 0.641787248322148 0.3232 0.787544303797468 0.51221 1 NA NA NA ATP1B1 ENSMLUG00000010015.2 ENSMLUT00000010005.2 6 304 88.48684211 0.157161129 0.7416 1.55528 1.55531 -2399.530233 -2399.530829 0.999404178 NA NA NA ATP1B1 ENSG00000143153.12 ENST00000494797.1 4 130 100 0.142624521 0.1377 0.19814 0.19814 -648.606372 -648.606401 0.999971 NA NA NA ATP1B1 1 1 NA NA NA 744 248 0.18405 0.20344 0.0316 0.1718 0.062328 0.374941875 0.15669 0.900382835820896 0.17402 1 0.945 11.02287 2 163_V_0.972,188_S_0.962 0.127407584583686 N 0.512253325467666 NA 0.127407584583686 N 0.315978849372803 NA 0.127407584583686 N 0.641485886175921 NA 0.127407584583686 N 0.348555531022459 NA 0.127407584583686 N 0.8466 0 ATP1B1_sequences_filtered_longestORFs_mafft_mincov_prank ATP1B1_all 399 25 0.119938698901 0.110 N 0.3059 2 150, 331 N 0.9999969665860213 0 na N 0.0946132023658145 0 na N 1.0 0 na N 1.0 0 na
+ATP5L ATP5MG ATP5L nsp6 list26_COV_list4dataset2nonOrf ATP synthase membrane subunit g ATP5JG|ATP5L no 24 312 104 0.26952 0.24062 0.0461 0.171 0.18493 0.556234765625 0.37335 0.840583333333333 0.41482 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 270 90 0.2522 0.11696 0.0215 0.0854 1 1 1 1 1 1 NA NA NA 0.288336500310939 N 0.428998438466092 NA 0.288336500310939 N 0.428486520006678 NA 0.288336500310939 N 0.714185833047596 NA 0.288336500310939 N 0.387337040056514 NA 0.288336500310939 N 1 0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
+ATP6AP1 ATP6AP1 ATP6AP1 nsp6 list26_COV_list4dataset2nonOrf ATPase H+ transporting accessory protein 1 16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3 no 24 1443 481 0.13691 0.58173 0.0767 0.5605 0.12109 0.427385 0.28155 0.722645 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP6AP1 ENSG00000071553.16 ENST00000619046.4 18 282 91.4893617 0.096121814 0.2011 0.41865 0.41897 -1572.757194 -1572.738926 0.981897848 NA NA NA ATP6AP1 0.421511211 1 NA NA NA 975 325 0.16921 0.29404 0.0445 0.263 0.13705 0.676464743589744 0.29241 1 0.37443 1 NA NA NA 0.164368656282149 N 1 NA 0.164368656282149 N 0.263907662572546 NA 0.164368656282149 N 0.999999049424329 NA 0.164368656282149 N 0.305512627678903 NA 0.164368656282149 N 0.4046 5 11, 15, 19, 20, 109 ATP6AP1_sequences_filtered_longestORFs_mafft_mincov_prank ATP6AP1_all 523 24 0.197452551824 0.161 Y 0.0032 11 21, 30, 31, 49, 121, 152, 303, 304, 305, 383, 445 N 0.9999985271744595 0 na N 0.6083417436309067 0 na N 1.0 0 na N 0.2109782988179196 0 na
+ATP6V1A ATP6V1A ATP6V1A M list26_COV_list4dataset2nonOrf ATPase H+ transporting V1 subunit A ARCL2D|ATP6A1|ATP6V1A1|HO68|IECEE3|VA68|VPP2|Vma1 no 24 1854 618 0.03667 0.3035 0.0122 0.3318 0.8936 1 0.98854 1 1 1 NA NA NA ATP6V1A ENSMLUG00000003808.2 ENSMLUT00000003810.2 10 618 99.51456311 0.036816946 0.2405 0.47687 0.47455 -3838.66641 -3838.735925 0.932846141 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP6V1A 1 1 NA NA NA 1536 512 0.05058 0.18094 0.0094 0.1854 0.47978 1 0.29455 1 0.77909 1 NA NA NA 0.0401349075577297 N 0.99998800007203 NA 0.0401349075577297 N 0.871361803278547 NA 0.0401349075577297 N 0.999991823546455 NA 0.0401349075577297 N 0.193003678804229 NA 0.0401349075577297 Y 1e-04 0 ATP6V1A_sequences_filtered_longestORFs_mafft_mincov_prank ATP6V1A_all 644 23 0.042230077137 0.034 Y 0.0002 6 143, 175, 181, 229, 318, 477 N 0.9999997399363904 0 na N 0.9380739331044443 0 na N 1.0 0 na N 0.8228346580562579 0 na
+BAG5 BAG5 BAG5 orf9b list25_COV_list3dataset2orf BCL2 associated athanogene 5 BAG-5 no 24 1467 489 0.06218 0.46292 0.0308 0.4953 1 1 0.97165 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BAG5 ENSG00000166170.9 ENST00000299204.4 19 448 99.33035714 0.045009369 0.2604 0.40094 0.40095 -2802.170187 -2802.171045 0.999142368 NA NA NA NA NA NA NA NA 1143 381 0.08204 0.25975 0.0203 0.247 1 1 0.77838 1 1 1 NA NA NA 0.0650087788044198 N 1 NA 0.0650087788044198 N 0.970849322872931 NA 0.0650087788044198 N 0.999996885798584 NA 0.0650087788044198 N 0.994614654525916 NA 0.0650087788044198 N 1 1 86 BAG5_sequences_filtered_longestORFs_mafft_mincov_prank BAG5_all 926 24 0.084971970061 0.089 N 1.0000 1 636 N 0.9999978009988431 0 na N 0.9999999326018973 0 na N 1.0 0 na N 1.0 0 na
+BCKDK BCKDK BCKDK nsp12 list24_COV_list2nonOrf branched chain ketoacid dehydrogenase kinase BCKDKD|BDK no 23 1239 413 0.06079 0.51593 0.0358 0.5888 1 1 1 1 1 1 NA NA NA BCKDK ENSMLUG00000004771.2 ENSMLUT00000004771.2 11 413 99.27360775 0.064361817 0.4158 0.82725 0.82725 -3137.031641 -3137.031697 0.999944002 NA NA NA BCKDK ENSG00000103507.13 ENST00000567682.1 7 145 100 0.239937421 0.1681 0.36019 0.37332 -819.027497 -818.724696 0.738746092 NA NA NA BCKDK 1 1 NA NA NA 855 285 0.06821 0.26047 0.0194 0.2848 1 1 1 1 1 1 NA NA NA 0.081273336567145 N 1 NA 0.081273336567145 N 0.99981401729717 NA 0.081273336567145 N 0.999999018939915 NA 0.081273336567145 N 0.734838831881352 NA 0.081273336567145 N 1 0 BCKDK_sequences_filtered_longestORFs_mafft_mincov_prank BCKDK_all 569 23 0.059177238490 0.052 N 0.4081 0 na N 0.9999997549239497 0 na Y 0.02137003412264926 1 27 N 1.0 0 na N 0.8658877480590035 0 na
+BCS1L BCS1L BCS1L orf9c list24_COV_list2nonOrf BCS1 homolog, ubiquinol-cytochrome c reductase complex chaperone BCS|BCS1|BJS|FLNMS|GRACILE|Hs.6719|MC3DN1|PTD|h-BCS|h-BCS1 no 22 1260 420 0.12122 0.32645 0.034 0.2808 0.010149 0.0751416346153846 0.03633 0.185225526315789 0.037167 0.27517875 1.669 4.98354 2 295_V_0.934,383_H_0.986 BCS1L ENSMLUG00000001520.2 ENSMLUT00000001514.2 14 418 97.6076555 0.122598675 0.3307 1.00355 1.00415 -3634.450422 -3634.398039 0.948965344 NA NA NA BCS1L ENSG00000074582.12 ENST00000436603.1 18 121 95.04132231 0.043897625 0.2035 0.32812 0.32686 -655.798553 -656.684909 0.412154912 NA NA NA NA NA NA NA NA 1032 344 0.12904 0.19338 0.0216 0.1671 0.44991 1 1 1 1 1 NA NA NA 0.14001750859775 Y 0.0371539941301484 1 383 0.14001750859775 Y 0.0333412136534226 1 383 0.14001750859775 N 0.18041585333952 NA 0.14001750859775 Y 0.00122760084886094 2 383, 295 0.14001750859775 N 1 1 386 BCS1L_sequences_filtered_longestORFs_mafft_mincov_prank BCS1L_all 774 24 0.092276958623 0.094 Y 0.0308 5 396, 705, 717, 741, 749 N 0.17084385208538738 0 na Y 2.2634385460968778e-05 3 650, 738, 741 Y 0.0039580650376051145 2 738, 741 Y 0.0003752192635744316 3 650, 738, 741
+BRD2 BRD2 BRD2 E list24_COV_list2nonOrf bromodomain containing 2 BRD2-IT1|D6S113E|FSH|FSRG1|NAT|O27.1.1|RING3|RNF3 no 22 2409 803 0.08383 0.40346 0.0305 0.3644 0.3639 0.838931137724551 0.6622 1 0.94347 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2064 688 0.08073 0.26902 0.0195 0.2413 0.61428 1 0.66143 1 0.88048 1 NA NA NA 0.0802379506284351 N 0.943486710115995 NA 0.0802379506284351 N 0.588971195853923 NA 0.0802379506284351 N 0.975432772819264 NA 0.0802379506284351 Y 0.0053256373491655 3 500, 469, 502 0.0802379506284351 N 1 0 BRD2_sequences_filtered_longestORFs_mafft_mincov_prank BRD2_all 1016 24 0.193797256005 0.204 N 0.9847 5 251, 282, 387, 583, 890 N 0.9999999632582337 0 na N 0.960398562611789 0 na N 1.0 0 na N 0.5288766765053515 0 na
+BRD4 BRD4 BRD4 E list24_COV_list2nonOrf bromodomain containing 4 CAP|HUNK1|HUNKI|MCAP no 21 4113 1371 0.06065 0.41153 0.0251 0.4132 0.29969 0.7211290625 0.042907 0.205252530864198 0.57425 1 4.429 1.50441 1 583_A_0.960 NA NA NA NA NA NA NA NA NA NA NA NA NA BRD4 ENSG00000141867.17 ENST00000630599.2 13 147 95.23809524 0.011362622 0.0798 0.08819 0.08798 -625.441726 -625.428566 0.986926214 NA NA NA BRD4 0.99680847 1 NA NA NA 3135 1045 0.09949 0.21838 0.021 0.2106 0.00033419 0.00761416764705882 0.001193 0.0270179411764706 0.0016057 0.03885371875 4.659 2.97219 3 756_Q_0.960,780_Q_0.960,781_Q_0.959 0.0710183726664934 N 0.577178904927767 NA 0.0710183726664934 Y 0.0022582953956478 1 583 0.0710183726664934 N 0.367478660994746 NA 0.0710183726664934 Y 5.77308442661791e-08 4 1017, 1018, 988, 583 0.0710183726664934 Y 0 6 188, 963, 988, 1011, 1018, 1021 BRD4_sequences_filtered_longestORFs_mafft_mincov_prank BRD4_all 3149 24 0.071135736852 0.048 Y 0.0000 1 1320 Y 9.427433477380182e-17 1 1320 Y 9.531062018384712e-15 2 758, 1320 N 0.8958341352960069 0 na Y 2.651786420363759e-38 1 1320
+BZW2 BZW2 BZW2 M list26_COV_list4dataset2nonOrf basic leucine zipper and W2 domains 2 HSPC028|MST017|MSTP017 no 23 1260 420 1e-04 0.2139 0 0.2168 0.99661 1 1 1 0.99859 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BZW2 0.94738989 1 NA NA NA 1074 358 1e-04 0.1059 0 0.1084 1 1 1 1 0.99933 1 NA NA NA 0.001 N 0.998513106523215 NA 0.001 N 0.998662894722877 NA 0.001 N 0.99999999999136 NA 0.001 N 0.999994832541852 NA 0.001 N 1 0 BZW2_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank BZW2_all_part2 634 24 0.010116694525 0.052 Y 0.0000 2 390, 396 N 0.9999999998335625 0 na N 0.9999800102652258 0 na Y 8.438891236882323e-10 3 6, 22, 81 Y 4.994993061121576e-11 3 6, 22, 81
+C19orf52 TIMM29 C19orf52 nsp4 list24_COV_list2nonOrf translocase of inner mitochondrial membrane 29 C19orf52|TIM29 no 20 783 261 0.09802 0.57547 0.0767 0.7829 0.025969 0.1483075 0.048206 0.220944166666667 0.22976 0.972061538461538 1.492 5.48993 2 20_A_0.923,21_V_0.908 TIMM29 ENSMLUG00000011121.2 ENSMLUT00000011135.2 7 228 93.85964912 0.123761455 0.5815 1.05185 1.06124 -1672.344087 -1671.95654 0.678719734 NA NA NA TIMM29 ENSG00000142444.6 ENST00000588807.1 18 27 88.88888889 0.191128523 0.821 1.03241 1.03327 -179.186532 -179.186761 0.999771026 NA NA NA NA NA NA NA NA 390 130 0.09538 0.45258 0.0517 0.5422 0.089563 0.499735579710145 0.23265 1 1 1 0.749 23.42706 1 8_V_0.916 0.185231534935388 N 0.22959784510773 NA 0.185231534935388 Y 0.0459262697464884 0 0.185231534935388 N 0.999998083713552 NA 0.185231534935388 N 0.986165565041883 NA 0.185231534935388 N 1 2 21, 119 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
+C1orf50 C1orf50 C1orf50 nsp13 list26_COV_list4dataset2nonOrf chromosome 1 open reading frame 50 - no 22 600 200 0.3773 0.34911 0.0779 0.2064 1 1 1 1 0.51939 1 NA NA NA C1orf50 ENSMLUG00000013623.2 ENSMLUT00000013623.2 12 199 97.48743719 0.310808096 0.2794 1.03296 1.03184 -1795.529196 -1795.400335 0.879096151 NA NA NA C1orf50 ENSG00000164008.14 ENST00000372525.5 14 200 98.5 0.266935677 0.0986 0.24533 0.24533 -1096.064024 -1096.064068 0.999956001 NA NA NA NA NA NA NA NA 486 162 0.37034 0.23435 0.0497 0.1343 1 1 1 1 0.99998 1 NA NA NA 0.387865615925376 N 0.519451932079927 NA 0.387865615925376 N 0.385915054421839 NA 0.387865615925376 N 0.384132288694785 NA 0.387865615925376 N 0.301925524025083 NA 0.387865615925376 N 1 0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
+CCDC86 CCDC86 CCDC86 nsp8 list26_COV_list4dataset2nonOrf coiled-coil domain containing 86 - no 24 1083 361 0.4232 0.68187 0.1624 0.3837 1 1 0.9155 1 1 1 NA NA NA CCDC86 ENSMLUG00000005025.2 ENSMLUT00000005026.2 10 360 88.05555556 0.380392898 0.4329 2.01267 2.01267 -3831.995145 -3831.995149 0.999996 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 756 252 0.47195 0.448 0.1119 0.2371 0.049749 0.353647 0.13949 0.82621 0.14587 1 28.144 1.9259 2 103_A_0.949,157_K_0.911 0.491749114182026 N 1 NA 0.491749114182026 N 0.911968344033377 NA 0.491749114182026 N 0.999955627360999 NA 0.491749114182026 N 0.975265055796253 NA 0.491749114182026 N 0.8385 2 120, 190 CCDC86_sequences_filtered_longestORFs_mafft_mincov_prank CCDC86_all 409 23 0.490439505516 0.397 N 1.0000 9 24, 56, 70, 133, 159, 164, 189, 242, 404 N 0.999999920300073 0 na N 0.943786792563708 0 na N 0.99900049983408 0 na N 0.9990004998331715 0 na
+CDK5RAP2 CDK5RAP2 CDK5RAP2 nsp13 list26_COV_list4dataset2nonOrf CDK5 regulatory subunit associated protein 2 C48|Cep215|MCPH3 yes 25 5700 1900 0.58312 0.61288 0.1681 0.2882 0.00024834 0.00407217708333333 0.00060022 0.009243388 0.0011099 0.01942325 1.803 4.24322 2 508_R_0.994,613_S_0.957 CDK5RAP2 ENSMLUG00000004984.2 ENSMLUT00000026972.1 7 901 98.6681465 0.35046295 0.3523 1.11238 1.15965 -7755.145506 -7743.162832 6.25e-06 -7754.009258 3.2e-06 4 R684, V651, K660, H661 NA NA NA NA NA NA NA NA NA NA NA NA NA CDK5RAP2 0.039812298 0.586040651 NA NA NA 4623 1541 0.56544 0.39808 0.1081 0.1911 0.24847 1 0.37909 1 0.51317 1 NA NA NA 0.558308886334333 Y 0.00110990372683422 1 508 0.558308886334333 Y 0.000586066086001049 2 508, 613 0.558308886334333 Y 0.0098676334862234 1 508 0.558308886334333 Y 0.00286434507890808 1 508 0.558308886334333 N 0.3248 12 45, 245, 377, 444, 508, 522, 810, 907, 1208, 1335, 1377, 1476 CDK5RAP2_sequences_filtered_longestORFs_mafft_mincov_prank CDK5RAP2_all 2658 25 0.523933602623 0.548 Y 0.0037 0 na Y 0.00021168144979182054 1 523 Y 1.1231640807620076e-06 4 523, 611, 1227, 1252 Y 4.446072472096559e-12 2 523, 611 Y 4.2180017118599783e-16 9 523, 611, 1149, 1182, 1227, 1252, 1291, 2179, 2452
+CENPF CENPF CENPF nsp13 list26_COV_list4dataset2nonOrf centromere protein F CENF|CILD31|PRO1779|STROMS|hcp-1 yes 21 9351 3117 0.49349 0.50557 0.1309 0.2652 5.9335e-06 0.0002076725 2.033e-05 0.000602080769230769 3.7031e-05 0.00118807791666667 5.064 3.36994 7 918_D_0.918,1364_I_0.975,1705_N_0.930,1728_S_0.901,1976_T_0.971,3073_P_0.919,3107_S_0.902 CENPF ENSMLUG00000017038.2 ENSMLUT00000017046.2 8 3083 92.83165748 0.263203446 0.4624 1.16969 1.18996 -26308.11871 -26290.23285 1.71e-08 -26301.2531 2.67e-06 4 S3001, T3002, S3004, C1367 CENPF ENSG00000117724.12 ENST00000614578.1 16 176 71.59090909 0.394049646 0.1534 0.47046 0.47825 -851.71129 -851.421955 0.748761328 NA NA NA CENPF 0.004868655 0.163786924 NA NA NA 8244 2748 0.53617 0.38435 0.104 0.194 0.00066123 0.01212255 0.0027428 0.0502846666666667 0.0032003 0.061605775 1.472 6.00619 2 820_D_0.933,1740_T_0.968 0.485817105959687 Y 3.70308577372592e-05 0 0.485817105959687 Y 1.19104189368209e-05 2 1364, 1976 0.485817105959687 N 0.165540860512517 NA 0.485817105959687 N 0.102804832229704 NA 0.485817105959687 N 0.916 19 241, 365, 788, 1024, 1247, 1532, 1663, 1719, 1728, 1759, 1765, 1804, 1976, 2063, 2453, 2670, 2768, 2972, 3078 CENPF_sequences_filtered_longestORFs_mafft_mincov_prank CENPF_all 3358 23 0.454025419172 0.442 N 0.5951 69 37, 77, 290, 297, 306, 314, 316, 448, 459, 582, 769, 855, 878, 881, 900, 942, 987, 1001, 1107, 1174, 1200, 1209, 1217, 1232, 1242, 1252, 1261, 1303, 1404, 1447, 1465, 1499, 1604, 1714, 1730, 1736, 1845, 1849, 1874, 1901, 1910, 1911, 1929, 1941, 2050, 2067, 2113, 2158, 2199, 2323, 2410, 2412, 2418, 2461, 2480, 2562, 2596, 2629, 2700, 2722, 2761, 2967, 3033, 3050, 3053, 3277, 3283, 3305, 3312 N 0.999992835412031 0 na N 0.10001252251812066 0 na Y 2.72352082703828e-05 0 Y 2.3803935637834017e-09 0
+CEP112 CEP112 CEP112 nsp13 list26_COV_list4dataset2nonOrf centrosomal protein 112 CCDC46|MACOCO no 23 2868 956 0.27672 0.36328 0.0696 0.2516 0.49425 1 0.78137 1 0.82637 1 NA NA NA CEP112 ENSMLUG00000013982.2 ENSMLUT00000013991.2 8 799 99.12390488 0.163141077 0.3459 0.77965 0.78737 -6120.488871 -6118.808518 0.186308198 NA NA NA CEP112 ENSG00000154240.16 ENST00000392769.6 14 956 98.9539749 0.120187334 0.1307 0.25774 0.26157 -5241.856728 -5241.04238 0.442928022 NA NA NA NA NA NA NA NA 2517 839 0.32162 0.27798 0.0584 0.1817 0.14144 0.6824125 0.30824 1 0.34172 1 NA NA NA 0.269228333936811 N 1 NA 0.269228333936811 N 0.959643900800886 NA 0.269228333936811 N 0.999994989365225 NA 0.269228333936811 N 0.957864341961774 NA 0.269228333936811 N 0.9999 1 162 CEP112_sequences_filtered_longestORFs_mafft_mincov_prank CEP112_all 1897 22 0.276849866887 0.271 N 0.2236 12 192, 196, 568, 940, 943, 955, 958, 996, 1041, 1637, 1668, 1754 N 0.44609727324197324 0 na N 0.05404672612720744 0 na Y 0.017970926883913562 0 na na 0 na
+CEP135 CEP135 CEP135 nsp13 list26_COV_list4dataset2nonOrf centrosomal protein 135 CEP4|KIAA0635|MCPH8 no 24 3423 1141 0.23978 0.39423 0.0725 0.3023 0.083372 0.327532857142857 0.15305 0.484689754098361 0.22336 0.966220224719101 10.668 1.77574 3 359_Q_0.922,485_I_0.928,599_S_0.949 CEP135 ENSMLUG00000015028.2 ENSMLUT00000015042.2 8 1140 99.38596491 0.16289216 0.2985 0.64712 0.64712 -7835.689032 -7835.689038 0.999994 NA NA NA CEP135 ENSG00000174799.10 ENST00000257287.4 17 1141 99.56178791 0.171373197 0.1243 0.32228 0.32336 -6728.250497 -6728.014371 0.789681168 NA NA NA CEP135 0.02680381 0.468831557 NA NA NA 3054 1018 0.26589 0.30015 0.0586 0.2205 0.043436 0.3372446 0.07069 0.544313 0.13152 0.973753846153846 6.965 2.45299 4 431_I_0.956,535_S_0.968,609_Y_0.926,673_K_0.910 0.258530733451754 N 0.223353401910698 NA 0.258530733451754 N 0.217604518293407 NA 0.258530733451754 N 0.643185296039169 NA 0.258530733451754 N 0.0920061060976224 NA 0.258530733451754 Y 0.0072 7 359, 592, 594, 597, 600, 749, 936 CEP135_sequences_filtered_longestORFs_mafft_mincov_prank CEP135_all 1226 24 0.270918243847 0.216 N 0.6143 19 165, 275, 371, 399, 420, 434, 642, 744, 820, 823, 840, 842, 848, 857, 915, 1022, 1172, 1218, 1226 Y 0.01228451555764139 1 1226 Y 0.0011272195226491707 1 1226 Y 0.01240072922045062 0 Y 0.0014648535608086791 1 1226
+CEP250 CEP250 CEP250 nsp13 list26_COV_list4dataset2nonOrf centrosomal protein 250 C-NAP1|CEP2|CNAP1 yes 24 7344 2448 0.37657 0.52603 0.1174 0.3117 3.9138e-06 0.000167423666666667 1.6167e-05 0.00051869125 2.6021e-05 0.000910735 1.303 6.002 6 700_H_0.961,985_R_0.991,1168_T_0.957,1346_R_0.956,1816_A_0.961,2144_F_0.904 CEP250 ENSMLUG00000016216.2 ENSMLUT00000016246.2 9 2430 98.39506173 0.223396701 0.2874 0.94684 0.99501 -19511.34122 -19479.88355 2.18e-14 -19502.87264 1.2e-11 8 C2329, L2325, I2327, D2328, R2073, S2332, C2333, L2127 CEP250 ENSG00000126001.15 ENST00000621352.1 6 35 82.85714286 0.583356771 0.1803 0.37104 0.37247 -146.318139 -146.267744 0.950853763 NA NA NA CEP250 2.38e-06 0.000511085 centrosomal protein 250 NA NA NA This gene encodes a core centrosomal protein required for centriole-centriole cohesion during interphase of the cell cycle. The encoded protein dissociates from the centrosomes when parental centrioles separate at the beginning of mitosis. 6276 2092 0.29525 0.37015 0.0731 0.2475 0.0066588 0.0754011176470588 0.020757 0.210301184210526 0.028514 0.332663333333333 0.494 9.3193 2 1567_A_0.958,1843_F_0.905 0.41523093266078 Y 2.60148507581882e-05 1 985 0.41523093266078 Y 2.27192267177214e-05 5 700, 985, 1168, 1346, 1816 0.41523093266078 Y 0.00454441110805319 1 985 0.41523093266078 Y 0.000184899559127481 1 985 0.41523093266078 N 0.4686 24 259, 431, 636, 639, 700, 783, 985, 996, 1216, 1232, 1346, 1798, 1816, 1963, 2025, 2085, 2125, 2127, 2143, 2144, 2252, 2264, 2285, 2332 CEP250_sequences_filtered_longestORFs_mafft_mincov_prank CEP250_all 4313 24 0.355610453794 0.325 N 0.5565 48 20, 444, 523, 525, 1113, 1116, 1121, 1134, 1193, 1205, 1229, 1261, 1279, 1898, 1904, 2047, 2119, 2164, 2247, 2258, 2442, 2479, 2521, 2567, 2646, 2668, 2693, 2744, 2923, 2939, 2946, 3098, 3105, 3116, 3121, 3263, 3311, 3325, 3367, 3387, 3425, 3434, 3955, 3966, 3988, 4057, 4070, 4158 Y 0.01445230788699479 0 Y 6.396420329554522e-05 1 2247 na na 0 na na na 0 na
+CEP350 CEP350 CEP350 nsp13 list26_COV_list4dataset2nonOrf centrosomal protein 350 CAP350|GM133 yes 24 9372 3124 0.31075 0.43385 0.0913 0.2937 0.0057823 0.0483953369565217 0.0033197 0.0319521125 0.015818 0.13932625 1.591 3.26025 1 1315_A_0.962 CEP350 ENSMLUG00000006005.2 ENSMLUT00000006017.2 11 3123 94.01216779 0.1994026 0.3487 1.02212 1.02439 -25926.89224 -25922.08507 0.008170926 -25922.09229 0.90432485 NA CEP350 ENSG00000135837.15 ENST00000417046.1 17 582 99.48453608 0.214925457 0.1419 0.37468 0.37468 -3640.619381 -3640.619382 0.999999 NA NA NA CEP350 0.37658998 1 NA NA NA 8271 2757 0.37414 0.32907 0.0763 0.204 0.022509 0.201534069767442 0.035304 0.32362 0.076923 0.7009975 3.482 2.74731 4 1026_Y_0.916,1078_A_0.917,1139_T_0.908,2164_S_0.920 0.322057401359143 Y 0.0158179169064365 0 0.322057401359143 Y 0.00333540889477607 1 1315 0.322057401359143 Y 0.0327500959271505 1 1315 0.322057401359143 Y 0.00816300307420733 1 1315 0.322057401359143 N 0.9417 11 181, 220, 253, 1236, 1277, 1315, 1425, 2205, 2207, 2637, 3123 CEP350_sequences_filtered_longestORFs_mafft_mincov_prank CEP350_all 4005 24 0.303284884646 0.290 N 0.8648 37 443, 461, 516, 524, 528, 555, 567, 586, 648, 795, 806, 1151, 1475, 1491, 1493, 1565, 1595, 1636, 1658, 1674, 1990, 2782, 2892, 3034, 3051, 3071, 3073, 3152, 3237, 3350, 3421, 3460, 3509, 3530, 3594, 3804, 3995 N 0.9999980207959684 0 na Y 0.04735914816863298 0 N 0.9910403787746719 0 na Y 0.02583564891214684 0
+CEP68 CEP68 CEP68 nsp13 list26_COV_list4dataset2nonOrf centrosomal protein 68 KIAA0582 yes 24 2277 759 0.59765 0.74742 0.2045 0.3421 1.7751e-05 0.0004881525 9.2334e-05 0.00209109352941176 8.3935e-05 0.0023082125 4.951 3.67498 5 44_R_0.927,190_A_0.949,220_G_0.949,414_R_0.999,425_R_0.985 CEP68 ENSMLUG00000002435.2 ENSMLUT00000002435.2 13 749 90.12016021 0.349914088 0.3466 1.64499 2.34495 -7894.797821 -7884.398068 3.04e-05 -7893.86228 1.36e-05 NA CEP68 ENSG00000011523.13 ENST00000537589.1 16 295 93.89830508 0.682457269 0.1598 0.61609 0.62168 -2118.847697 -2115.780209 0.046537911 -2118.560686 0.018365404 2 R25, R36 CEP68 0.946090868 1 NA NA NA 1731 577 0.55976 0.41977 0.1124 0.2008 0.1004 0.544422535211268 0.24567 1 0.25935 1 NA NA NA 0.569724791849092 Y 0.000310391547816092 2 414, 425 0.569724791849092 Y 0.000313405085909614 3 190, 414, 425 0.569724791849092 Y 0.00205287277046896 1 414 0.569724791849092 Y 6.19435980682398e-05 2 425, 414 0.569724791849092 Y 4e-04 6 157, 228, 414, 448, 549, 592 CEP68_sequences_filtered_longestORFs_mafft_mincov_prank CEP68_all 1164 24 0.569514697739 0.589 Y 0.0462 29 35, 60, 132, 134, 143, 148, 202, 207, 249, 279, 294, 396, 429, 450, 462, 465, 476, 493, 512, 513, 585, 586, 600, 651, 659, 757, 960, 980, 985 Y 0.0007482232324301053 0 Y 4.7907226839875226e-05 2 60, 465 Y 6.013010059238225e-05 1 465 Y 5.66615387113456e-06 5 60, 132, 249, 465, 980
+CHMP2A CHMP2A CHMP2A orf9b list25_COV_list3dataset2orf charged multivesicular body protein 2A BC-2|BC2|CHMP2|VPS2|VPS2A no 24 669 223 0.00793 0.38776 0.004 0.5084 0.23208 0.629230985915493 0.029512 0.165459097222222 0.48971 1 0.484 3.36041 0 noneOver_0.9 CHMP2A ENSMLUG00000014318.2 ENSMLUT00000014320.2 11 225 93.33333333 0.009865607 0.6108 51.30209 51.30799 -2251.87779 -2250.702219 0.308642694 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CHMP2A 0.255998936 1 NA NA NA 519 173 1e-04 0.26378 0 0.3752 0.99483 1 1 1 0.9991 1 NA NA NA 0.0095723400860964 N 0.489621811080939 NA 0.0095723400860964 Y 0.0232582353747404 0 0.0095723400860964 N 0.804290096003881 NA 0.0095723400860964 Y 0.0215720474925036 1 201 0.0095723400860964 N 1 0 CHMP2A_sequences_filtered_longestORFs_mafft_mincov_prank CHMP2A_all 784 24 0.134317039832 0.113 N 0.0739 2 614, 643 N 0.9999997898121585 0 na N 0.9726719257023788 0 na N 1.0 0 na Y 0.0026959624879334 0
+CHPF CHPF CHPF orf8 list23_COV_list1orf chondroitin polymerizing factor CHSY2|CSS2 no 22 2331 777 0.05393 0.4563 0.0271 0.5028 0.85614 1 0.75958 1 0.98819 1 NA NA NA CHPF ENSMLUG00000010340.2 ENSMLUT00000010332.2 7 773 98.70633894 0.075455074 0.3363 0.7372 0.7372 -5413.519552 -5413.519654 0.999898005 NA NA NA CHPF ENSG00000123989.13 ENST00000373891.2 15 299 97.65886288 0.038916877 0.1553 0.31839 0.3229 -1631.411117 -1631.246076 0.847858941 NA NA NA CHPF 1 1 NA NA NA 1518 506 0.0538 0.2465 0.0143 0.2652 1 1 1 1 0.99978 1 NA NA NA 0.0769244528673512 N 0.988663745114139 NA 0.0769244528673512 N 0.651709088439254 NA 0.0769244528673512 N 0.999999155016114 NA 0.0769244528673512 N 0.253582385668968 NA 0.0769244528673512 N 1 0 CHPF_sequences_filtered_longestORFs_mafft_mincov_prank CHPF_all 790 24 0.048013757058 0.048 N 1.0000 1 370 N 0.9999996829984005 0 na Y 0.0004093545908648424 3 370, 373, 767 N 0.9970044955036704 0 na Y 0.03080741103276452 1 373
+CHPF2 CHPF2 CHPF2 orf8 list25_COV_list3dataset2orf chondroitin polymerizing factor 2 CSGLCA-T|CSGlcAT|ChSy-3|chPF-2 no 21 2319 773 0.10299 0.3802 0.0347 0.337 1 1 0.96492 1 1 1 NA NA NA CHPF2 ENSMLUG00000003546.2 ENSMLUT00000003546.2 11 775 96.51612903 0.057756561 0.363 1.03035 1.03035 -6033.059791 -6033.060055 0.999736035 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CHPF2 0.998871621 1 NA NA NA 1758 586 0.08267 0.22172 0.0174 0.2103 0.91855 1 0.99004 1 0.99466 1 NA NA NA 0.119075070560033 N 1 NA 0.119075070560033 N 0.968693521888361 NA 0.119075070560033 N 0.999997592856003 NA 0.119075070560033 N 0.175465720185498 NA 0.119075070560033 N 0.7164 2 311, 677 CHPF2_sequences_filtered_longestORFs_mafft_mincov_prank CHPF2_all 824 22 0.091580003619 0.083 N 0.9114 1 683 N 0.9999999813981051 0 na Y 0.015369463566035994 5 82, 319, 380, 526, 683 N 0.9930244429336252 0 na N 0.3723205880533881 0 na
+CISD3 CISD3 CISD3 orf8 list25_COV_list3dataset2orf CDGSH iron sulfur domain 3 MiNT|Miner2 no 23 384 128 0.16332 0.56734 0.0939 0.5748 1 1 0.87087 1 0.94745 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 279 93 0.04635 0.22112 0.0141 0.3044 1 1 1 1 1 1 NA NA NA 0.205782917745767 N 0.94833354300021 NA 0.205782917745767 N 0.803221309214577 NA 0.205782917745767 N 0.832743426172316 NA 0.205782917745767 N 0.0713101672514209 NA 0.205782917745767 Y 0 1 6 CISD3_sequences_filtered_longestORFs_mafft_mincov_prank CISD3_all 755 22 0.246814179431 0.269 Y 0.0000 2 240, 304 N 0.99999994431778 0 na N 0.7283308007321679 0 na N 1.0 0 na N 0.7780223715587988 0 na
+CIT CIT CIT nsp13 list26_COV_list4dataset2nonOrf citron rho-interacting serine/threonine kinase CITK|CRIK|MCPH17|STK21 no 24 6210 2070 0.03889 0.33654 0.014 0.3603 0.99887 1 0.10317 0.374721226415094 1 1 NA NA NA CIT ENSMLUG00000015398.2 ENSMLUT00000015418.2 9 2053 99.75645397 0.049639278 0.2704 0.58266 0.58355 -13769.99377 -13769.98439 0.990667818 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CIT 0.981289664 1 NA NA NA 4941 1647 0.05523 0.16649 0.0092 0.1672 0.28546 1 0.23839 1 0.56482 1 NA NA NA 0.0432539920127767 N 1 NA 0.0432539920127767 Y 0.0185402358088528 0 0.0432539920127767 N 0.999998278400771 NA 0.0432539920127767 Y 2.25425056306957e-05 11 258, 8, 1835, 304, 369, 338, 434, 625, 151, 410, 255 0.0432539920127767 N 1 1 410 CIT_sequences_filtered_longestORFs_mafft_mincov_prank CIT_all 2945 24 0.037646555111 0.036 N 1.0000 5 270, 374, 457, 586, 2759 N 0.9999999319788936 0 na Y 3.303048206279468e-12 7 218, 270, 372, 374, 423, 764, 2638 N 0.9980019986669264 0 na Y 0.0014031999106819035 1 374
+CLCC1 CLCC1 CLCC1 orf3a list23_COV_list1orf chloride channel CLIC like 1 MCLC no 24 1662 554 0.37305 0.58272 0.1318 0.3532 0.18203 0.556202777777778 0.3418 0.804883333333333 0.41159 1 NA NA NA CLCC1 ENSMLUG00000010565.2 ENSMLUT00000010579.2 10 551 80.21778584 0.223061198 0.5464 1.66053 1.66452 -4798.81463 -4798.355971 0.632130765 NA NA NA CLCC1 ENSG00000121940.15 ENST00000356970.6 17 552 90.94202899 0.245120934 0.1799 0.48976 0.49191 -3497.202062 -3496.537675 0.514588874 NA NA NA CLCC1 0.533670304 1 NA NA NA 1359 453 0.37748 0.37499 0.0864 0.2288 0.26949 1 0.49425 1 0.5431 1 NA NA NA 0.402779969908178 N 0.411570067487763 NA 0.402779969908178 N 0.408223279741024 NA 0.402779969908178 N 0.559139084587359 NA 0.402779969908178 N 0.148317867331667 NA 0.402779969908178 N 1 1 195 CLCC1_sequences_filtered_longestORFs_mafft_mincov_prank CLCC1_all 1003 23 0.387140057280 0.358 N 1.0000 0 na N 0.9969528688945792 0 na N 0.1975430987785456 0 na N 0.3017972031261467 0 na Y 0.039281563198178604 0
+CLIP4 CLIP4 CLIP4 nsp13 list26_COV_list4dataset2nonOrf CAP-Gly domain containing linker protein family member 4 RSNL2 no 24 2118 706 0.09451 0.43 0.0397 0.4196 0.16867 0.5227068 0.13376 0.440150427350427 0.47151 1 NA NA NA CLIP4 ENSMLUG00000010758.2 ENSMLUT00000010784.2 10 703 91.89189189 0.097768764 0.7931 1.28069 1.28272 -5809.284419 -5808.85544 0.651173604 NA NA NA CLIP4 ENSG00000115295.19 ENST00000438819.1 18 93 95.69892473 0.049852989 0.1251 0.21689 0.21685 -452.01225 -451.992607 0.980548667 NA NA NA CLIP4 0.219143969 1 NA NA NA 1710 570 0.10121 0.24545 0.0254 0.2506 0.5335 1 0.54715 1 0.82901 1 NA NA NA 0.109699235633724 N 0.570188084372374 NA 0.109699235633724 N 0.186292734697822 NA 0.109699235633724 N 0.912209075842965 NA 0.109699235633724 N 0.0921547523075347 NA 0.109699235633724 N 1 1 420 CLIP4_sequences_filtered_longestORFs_mafft_mincov_prank CLIP4_all 1304 24 0.117031084297 0.103 Y 0.0025 7 113, 298, 347, 379, 446, 501, 827 N 0.9999989817802725 0 na Y 0.028418180164528135 1 386 Y 0.004927123153974509 0 Y 0.040477864898334465 0
+CNTRL CNTRL CNTRL nsp13 list26_COV_list4dataset2nonOrf centriolin CEP1|CEP110|FAN|bA165P4.1 yes 24 6981 2327 0.40767 0.39419 0.092 0.2258 1.7117e-06 9.41435e-05 9.3186e-06 0.000398629 1.0608e-05 0.00051051 0.933 7.94398 8 437_T_0.993,510_Q_0.935,853_R_0.978,1300_P_0.910,1376_C_0.975,1725_S_0.981,2217_F_0.912,2323_A_0.917 CNTRL ENSMLUG00000009719.2 ENSMLUT00000009796.2 10 2333 96.78525504 0.179657066 0.2905 0.74087 0.74929 -17641.08711 -17631.26535 5.43e-05 -17636.52747 0.001178187 1 K252 CNTRL ENSG00000119397.16 ENST00000613863.4 18 483 96.6873706 0.203384647 0.1481 0.36514 0.36908 -2911.518698 -2910.971378 0.57849811 NA NA NA CNTRL 1.66e-08 6.99e-06 centriolin NA NA NA This gene encodes a centrosomal protein required for the centrosome to function as a microtubule organizing center. The gene product is also associated with centrosome maturation. 6198 2066 0.39801 0.29068 0.0677 0.1701 0.046776 0.339787924528302 0.11823 0.734170161290323 0.12713 0.963556862745098 0.077 19.53224 1 1536_S_0.939 0.381296220708386 Y 1.06083089574306e-05 3 437, 853, 1725 0.381296220708386 Y 9.53201905189812e-06 4 437, 853, 1376, 1725 0.381296220708386 Y 0.0116594870548746 1 437 0.381296220708386 Y 0.00221555152457114 1 437 0.381296220708386 N 0.2142 11 52, 188, 433, 437, 1220, 1316, 1490, 1910, 1950, 2026, 2301 CNTRL_sequences_filtered_longestORFs_mafft_mincov_prank CNTRL_all 5380 24 0.358903199166 0.357 Y 0.0000 44 106, 113, 138, 161, 175, 236, 266, 280, 330, 344, 345, 517, 523, 527, 618, 647, 751, 893, 918, 922, 949, 1090, 1154, 1200, 1292, 1339, 1402, 1435, 1460, 1537, 1566, 1643, 2629, 3606, 3616, 3749, 4431, 4451, 4497, 4577, 4784, 5312, 5314, 5321 Y 0.002142941149050039 1 527 Y 0.00016584455688879604 1 527 na na 0 na na na 0 na
+COL6A1 COL6A1 COL6A1 orf8 list25_COV_list3dataset2orf collagen type VI alpha 1 chain BTHLM1|OPLL|UCHMD1 no 23 3087 1029 0.04809 0.87953 0.0553 1.1505 1 1 1 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA COL6A1 ENSG00000142156.14 ENST00000612273.1 13 1027 92.69717624 0.146502902 0.3357 0.82367 0.82367 -7083.510661 -7083.510716 0.999945002 NA NA NA COL6A1 0.53045283 1 NA NA NA 1683 561 0.05345 0.28467 0.0221 0.4128 1 1 1 1 1 1 NA NA NA 0.0618582485975672 N 1 NA 0.0618582485975672 N 0.928432127450843 NA 0.0618582485975672 N 0.999999447850466 NA 0.0618582485975672 Y 0.0300647016705267 1 5 0.0618582485975672 Y 0 31 27, 74, 76, 109, 120, 184, 327, 354, 372, 384, 394, 433, 460, 462, 489, 565, 574, 654, 680, 693, 749, 757, 763, 811, 836, 852, 863, 868, 904, 908, 916 COL6A1_sequences_filtered_longestORFs_mafft_mincov_prank COL6A1_all 1482 22 0.084215349534 0.056 N 0.1077 16 154, 269, 376, 406, 657, 723, 789, 894, 1022, 1025, 1123, 1124, 1183, 1215, 1244, 1348 N 0.9999994799910825 0 na Y 1.951983742015941e-06 8 156, 177, 255, 266, 767, 925, 1208, 1281 N 1.0 0 na Y 0.0011238443676984354 0
+COLGALT1 COLGALT1 COLGALT1 nsp1 list26_COV_list4dataset2nonOrf collagen beta(1-O)galactosyltransferase 1 ColGalT 1|GLT25D1 no 24 1869 623 0.04239 0.70448 0.0442 1.0436 0.14548 0.478716239316239 0.017881 0.116681101694915 1 1 0.753 2.62207 1 547_H_0.957 COLGALT1 ENSMLUG00000004442.2 ENSMLUT00000004449.2 5 629 97.13831479 0.076213473 0.3899 0.71621 0.71708 -3712.931218 -3712.921308 0.990138942 NA NA NA COLGALT1 ENSG00000130309.10 ENST00000597147.1 17 217 100 0.024196018 0.3142 0.62531 0.62533 -1376.826978 -1376.827961 0.999017483 NA NA NA COLGALT1 1 1 NA NA NA 1119 373 0.04579 0.38495 0.0277 0.6059 0.18517 0.848695833333333 0.30292 1 0.40115 1 NA NA NA 0.0682327560255011 na NA NA 0.0682327560255011 na NA NA 0.0682327560255011 N 0.999998801814208 NA 0.0682327560255011 Y 0.0472401958340565 1 547 0.0682327560255011 na NA 0 COLGALT1_sequences_filtered_longestORFs_D262gp2_prank COLGALT1_262-2 670 22 0.064528425433 0.044 Y 0.0020 4 22, 102, 147, 243 N 0.9999997906106947 0 na N 0.1087993010801923 0 na N 1.0 0 na N 0.1056102339500828 0 na
+COMT COMT COMT nsp7 list26_COV_list4dataset2nonOrf catechol-O-methyltransferase HEL-S-98n no 24 819 273 0.18931 1.04616 0.1861 0.9829 0.83136 1 0.5052 1 1 1 NA NA NA COMT ENSMLUG00000009290.2 ENSMLUT00000009278.2 12 269 76.57992565 0.238498277 0.5648 2.23819 2.36405 -2574.274077 -2564.587824 6.21e-05 -2570.040918 0.000958436 2 L163, L31 COMT ENSG00000093010.13 ENST00000428707.1 14 152 89.47368421 0.318784335 0.1652 0.7361 0.75512 -1091.441756 -1088.752312 0.067918692 NA NA NA NA NA NA NA NA 495 165 0.20246 0.49391 0.0907 0.4478 0.72222 1 0.80254 1 0.94991 1 NA NA NA 0.213627427731772 N 0.992824865078556 NA 0.213627427731772 N 0.163488439102177 NA 0.213627427731772 N 0.949553648025354 NA 0.213627427731772 N 0.101465955891152 NA 0.213627427731772 N 0.2196 4 48, 95, 148, 152 COMT_sequences_filtered_longestORFs_mafft_mincov_prank COMT_all 1143 24 na na na na 0 na na na 0 na na na 0 na na na 0 na na na 0 na
+CRTC3 CRTC3 CRTC3 nsp12 list24_COV_list2nonOrf CREB regulated transcription coactivator 3 TORC-3|TORC3 no 24 1860 620 0.15898 0.49654 0.0622 0.3913 1 1 1 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CRTC3 ENSG00000140577.15 ENST00000558005.1 15 189 100 0.175393258 0.1453 0.37919 0.42036 -1190.280278 -1172.866651 2.74e-08 -1189.827595 5.74e-09 NA CRTC3 0.076771389 0.831146916 NA NA NA 1419 473 0.16941 0.2975 0.0408 0.241 1 1 1 1 1 1 NA NA NA 0.159818840351526 N 1 NA 0.159818840351526 N 0.999999000001071 NA 0.159818840351526 N 0.999999822145598 NA 0.159818840351526 N 0.718133474293693 NA 0.159818840351526 N 1 2 403, 550 CRTC3_sequences_filtered_longestORFs_mafft_mincov_prank CRTC3_all 1009 23 0.136194814144 0.157 Y 0.0214 12 45, 46, 47, 177, 281, 694, 717, 785, 797, 835, 868, 897 N 0.14908779103504977 0 na Y 0.0016285455675104437 2 45, 47 N 0.8529963589694294 0 na N 0.18562996914102153 0 na
+CSDE1 CSDE1 CSDE1 orf9b list25_COV_list3dataset2orf cold shock domain containing E1 D1S155E|UNR no 22 2535 845 0.03244 0.18065 0.0066 0.2039 0.99342 1 0.97742 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CSDE1 1 1 NA NA NA 2220 740 0.03113 0.12333 0.0044 0.141 1 1 1 1 0.99985 1 NA NA NA 0.0329935406369092 N 1 NA 0.0329935406369092 N 0.903210175641496 NA 0.0329935406369092 N 0.999992612343708 NA 0.0329935406369092 N 0.438646629412624 NA 0.0329935406369092 Y 1e-04 1 736 CSDE1_sequences_filtered_longestORFs_mafft_mincov_prank CSDE1_all 1421 24 0.113593693126 0.122 Y 0.0000 2 172, 173 N 0.9999995787275998 0 na N 0.9984935954836791 0 na N 1.0 0 na N 0.7254232509902045 0 na
+CSNK2A2 CSNK2A2 CSNK2A2 N list26_COV_list4dataset2nonOrf casein kinase 2 alpha 2 CK2A2|CK2alpha'|CSNK2A1 no 24 1053 351 0.01752 0.19671 0.004 0.2297 1 1 1 1 1 1 NA NA NA CSNK2A2 ENSMLUG00000000283.2 ENSMLUT00000000282.2 6 282 93.26241135 NA 0.1352 50.09872 50.09883 -1796.781788 -1796.784621 0.997171009 NA NA NA CSNK2A2 ENSG00000070770.8 ENST00000565188.1 10 135 85.92592593 0.180818547 0.0661 0.05104 0.05104 -491.876359 -491.87636 0.999999 NA NA NA CSNK2A2 0.998404232 1 NA NA NA 888 296 0.03261 0.11613 0.0047 0.1428 1 1 1 1 0.99997 1 NA NA NA 0.0189492736885815 N 0.999856010367411 NA 0.0189492736885815 N 0.999857010224033 NA 0.0189492736885815 N 0.999999993006213 NA 0.0189492736885815 N 0.999979228570689 NA 0.0189492736885815 N 1 0 CSNK2A2_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank CSNK2A2_all_part2 571 24 0.035420376077 0.034 N 1.0000 0 na N 0.9999939666734114 0 na N 0.4276588948283805 0 na N 1.0 0 na N 0.7834876342627513 0 na
+CSNK2B CSNK2B CSNK2B N list26_COV_list4dataset2nonOrf casein kinase 2 beta CK2B|CK2N|CSK2B|Ckb1|Ckb2|G5A no 23 648 216 0.06127 0.27347 0.0173 0.2817 1 1 1 1 1 1 NA NA NA CSNK2B ENSMLUG00000009414.2 ENSMLUT00000009411.2 13 236 86.86440678 0.004570907 0.3122 0.61783 0.6146 -1327.632217 -1327.37153 0.770522055 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CSNK2B 1 1 NA NA NA 537 179 0.02126 0.18748 0.005 0.2342 1 1 1 1 0.99975 1 NA NA NA 0.0590210365242727 N 0.999918003361888 NA 0.0590210365242727 N 0.996935704566402 NA 0.0590210365242727 N 0.999997048651529 NA 0.0590210365242727 N 0.757123500283052 NA 0.0590210365242727 N 1 0 CSNK2B_sequences_filtered_longestORFs_mafft_mincov_prank CSNK2B_all 856 23 0.237889117100 0.251 Y 0.0017 9 138, 139, 143, 148, 178, 189, 318, 411, 630 N 0.9999992911891934 0 na N 0.999874632721648 0 na N 1.0 0 na N 0.33722665767603527 0 na
+CUL2 CUL2 CUL2 orf10 list25_COV_list3dataset2orf cullin 2 - no 19 2295 765 0.0304 0.23 0.0077 0.2534 0.76743 1 0.31529 0.773163375796178 0.81961 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2064 688 0.03811 0.14669 0.0063 0.166 1 1 1 1 0.99983 1 NA NA NA 0.020702538168141 N 0.819540878333554 NA 0.020702538168141 N 0.219252553779649 NA 0.020702538168141 N 0.999999588168151 NA 0.020702538168141 N 0.305064224344481 NA 0.020702538168141 N 1 0 CUL2_sequences_filtered_longestORFs_mafft_mincov_prank CUL2_all 1261 23 0.039776471005 0.041 N 1.0000 1 623 N 0.999999793381015 0 na N 0.5432168616840068 0 na N 1.0 0 na N 0.7505117288368713 0 na
+CWC27 CWC27 CWC27 E list26_COV_list4dataset2nonOrf CWC27 spliceosome associated protein homolog NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 no 22 1422 474 0.14589 0.321 0.0455 0.3121 0.55657 1 0.60269 1 0.84731 1 NA NA NA CWC27 ENSMLUG00000003562.2 ENSMLUT00000003564.2 4 313 94.88817891 0.096007456 0.3081 0.38211 0.38211 -1632.491527 -1632.491553 0.999974 NA NA NA CWC27 ENSG00000153015.15 ENST00000508024.1 6 382 97.90575916 0.223945479 0.0634 0.11018 0.12637 -1747.965293 -1745.841439 0.119569917 NA NA NA CWC27 1 1 NA NA NA 1227 409 0.21492 0.20943 0.0378 0.1759 1 1 1 1 1 1 NA NA NA 0.19604141170104 N 0.82389679969897 NA 0.19604141170104 N 0.604486464748011 NA 0.19604141170104 N 0.999994917487312 NA 0.19604141170104 N 0.954430668534651 NA 0.19604141170104 N 1 2 253, 260 CWC27_sequences_filtered_longestORFs_mafft_mincov_prank CWC27_all 1544 24 0.206760740444 0.148 Y 0.0000 2 342, 358 N 0.9999970780524506 0 na N 0.7563770914404656 0 na N 1.0 0 na Y 3.8561942208303546e-08 0
+CYB5B CYB5B CYB5B nsp7 list26_COV_list4dataset2nonOrf cytochrome b5 type B CYB5-M|CYPB5M|OMB5 no 24 453 151 0.22144 0.36415 0.0587 0.2649 0.55997 1 0.65223 1 0.84198 1 NA NA NA CYB5B ENSMLUG00000006608.2 ENSMLUT00000006598.2 4 148 78.37837838 0.557940745 0.3324 0.9831 1.15315 -783.618443 -781.550673 0.12646749 NA NA NA CYB5B ENSG00000103018.16 ENST00000307892.12 4 151 98.01324503 0.12987815 0.1274 0.16408 0.16408 -724.577464 -724.577492 0.999972 NA NA NA CYB5B 0.685166434 1 NA NA NA 351 117 0.3512 0.22811 0.0476 0.1355 1 1 1 1 0.99999 1 NA NA NA 0.224524367009394 N 0.903931225021612 NA 0.224524367009394 N 0.79677655268174 NA 0.224524367009394 N 0.961783829627146 NA 0.224524367009394 N 0.958042799669735 NA 0.224524367009394 N 1 0 CYB5B_sequences_filtered_longestORFs_mafft_mincov_prank CYB5B_all 781 24 0.159080696060 0.226 N 1.0000 2 550, 584 N 0.9999998873261183 0 na N 0.55325096211161 0 na N 0.9521811296985256 0 na N 0.1308112283486016 0 na
+CYB5R3 CYB5R3 CYB5R3 nsp7 list24_COV_list2nonOrf cytochrome b5 reductase 3 B5R|DIA1 no 24 1005 335 0.07081 0.65259 0.0578 0.8156 0.80021 1 0.44949 0.961245027624309 0.97702 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CYB5R3 ENSG00000100243.20 ENST00000361740.8 10 335 77.91044776 0.129886326 0.2462 0.47319 0.47859 -1581.374141 -1581.50339 0.878755128 NA NA NA CYB5R3 1 1 NA NA NA 687 229 0.06525 0.32689 0.0299 0.4578 0.30143 1 0.46291 1 0.57986 1 NA NA NA 0.0612970360626735 N 0.976994750533726 NA 0.0612970360626735 N 0.433254484327998 NA 0.0612970360626735 N 0.999999845810419 NA 0.0612970360626735 N 0.887854761905591 NA 0.0612970360626735 N 1 2 87, 101 CYB5R3_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank CYB5R3_all_part1 840 24 0.068506739915 0.063 N 0.4163 3 71, 218, 355 N 0.9999995824569813 0 na N 0.999926572504325 0 na N 1.0 0 na N 1.0 0 na
+DCAF7 DCAF7 DCAF7 nsp9 list24_COV_list2nonOrf DDB1 and CUL4 associated factor 7 AN11|HAN11|SWAN-1|WDR68 no 24 1029 343 1e-04 0.23939 0 0.3147 0.99056 1 1 1 0.99836 1 NA NA NA DCAF7 ENSMLUG00000012623.2 ENSMLUT00000012630.2 12 344 98.25581395 0.006208383 0.2911 0.5473 0.5473 -2206.816373 -2206.818012 0.998362342 NA NA NA DCAF7 ENSG00000136485.14 ENST00000615512.1 18 206 100 0.0297002 0.1034 0.20993 0.20994 -1098.377869 -1098.378045 0.999824015 NA NA NA DCAF7 0.992953366 1 NA NA NA 819 273 1e-04 0.09041 0 0.1256 1 1 1 1 0.99935 1 NA NA NA 0.001 N 0.998358348985773 NA 0.001 N 0.998349363800975 NA 0.001 N 0.999999999995225 NA 0.001 N 0.999906626327104 NA 0.001 N 1 0 DCAF7_sequences_filtered_longestORFs_mafft_mincov_prank DCAF7_all 419 22 0.016008388641 0.015 Y 0.0355 0 na N 0.99999989632534 0 na N 0.4003587295913235 0 na N 1.0 0 na N 0.8065414401772095 0 na
+DCAKD DCAKD DCAKD nsp7 list26_COV_list4dataset2nonOrf dephospho-CoA kinase domain containing - no 24 696 232 0.0853 0.57967 0.058 0.6794 1 1 0.82369 1 1 1 NA NA NA DCAKD ENSMLUG00000012210.2 ENSMLUT00000012210.2 14 134 100 0.018187335 0.456 1.09575 1.09582 -1090.412227 -1090.413531 0.99869685 NA NA NA DCAKD ENSG00000172992.11 ENST00000310604.8 17 232 93.53448276 0.123103624 0.2779 0.71979 0.72647 -1647.951202 -1647.856512 0.909654884 NA NA NA DCAKD 0.97028099 1 NA NA NA 453 151 0.04095 0.2582 0.0127 0.3103 1 1 1 1 0.99978 1 NA NA NA 0.124700893936788 N 1 NA 0.124700893936788 N 0.817139052259767 NA 0.124700893936788 N 0.999998996554544 NA 0.124700893936788 N 0.890643884878026 NA 0.124700893936788 N 1 0 DCAKD_sequences_filtered_longestORFs_mafft_mincov_prank DCAKD_all 492 24 0.079209485979 0.072 N 1.0000 1 261 N 0.9999997815157496 0 na N 0.9999999682427193 0 na N 1.0 0 na N 0.9990004998336257 0 na
+DCTPP1 DCTPP1 DCTPP1 orf9b list25_COV_list3dataset2orf dCTP pyrophosphatase 1 CDA03|RS21C6|XTP3TPA no 23 513 171 0.29992 0.6262 0.1241 0.4138 0.014497 0.0962300862068965 0.043183 0.205252530864198 0.059901 0.397618706896552 1.589 6.25376 2 13_G_0.991,90_A_0.903 DCTPP1 ENSMLUG00000013774.2 ENSMLUT00000013776.2 13 171 88.88888889 0.228516312 0.5182 1.54428 1.5644 -1611.591443 -1610.897723 0.499713672 NA NA NA DCTPP1 ENSG00000179958.8 ENST00000565758.1 18 50 94 0.365164472 0.23 0.61043 0.87126 -347.668296 -346.081898 0.204661476 NA NA NA DCTPP1 0.936916944 1 NA NA NA 351 117 0.36562 0.39354 0.0871 0.2383 0.29593 1 0.57449 1 0.57993 1 NA NA NA 0.353864579000096 N 0.132955605462084 NA 0.353864579000096 N 0.106130161445989 NA 0.353864579000096 N 0.318209338106866 NA 0.353864579000096 N 0.128096426468533 NA 0.353864579000096 N 0.5748 1 13 DCTPP1_sequences_filtered_longestORFs_mafft_mincov_prank DCTPP1_all 183 24 0.346244286573 0.339 N 1.0000 3 26, 103, 169 N 0.9808463497524612 0 na N 0.5723036326699686 0 na N 0.8684893116976016 0 na N 0.35915544132944505 0 na
+DDX10 DDX10 DDX10 nsp8 list24_COV_list2nonOrf DEAD-box helicase 10 Dbp4|HRH-J8 no 24 2664 888 0.20192 0.51551 0.0826 0.409 0.87746 1 0.98818 1 1 1 NA NA NA DDX10 ENSMLUG00000001645.2 ENSMLUT00000001650.2 7 668 93.41317365 0.151130157 0.2951 0.74067 0.74294 -4657.636879 -4656.832291 0.447272165 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DDX10 1 1 NA NA NA 2199 733 0.23126 0.37751 0.0655 0.2831 0.91769 1 1 1 1 1 NA NA NA 0.219169390153182 N 1 NA 0.219169390153182 N 0.984268060324424 NA 0.219169390153182 N 0.999995044786828 NA 0.219169390153182 N 0.845800796308745 NA 0.219169390153182 N 1 3 298, 573, 741 DDX10_sequences_filtered_longestORFs_mafft_mincov_prank DDX10_all 1253 23 0.229039735865 0.207 N 0.1465 10 484, 727, 843, 936, 947, 1014, 1021, 1184, 1195, 1234 N 0.9999981429081308 0 na N 0.9995854832899672 0 na N 1.0 0 na N 0.9093729344671728 0 na
+DDX21 DDX21 DDX21 N list26_COV_list4dataset2nonOrf DExD-box helicase 21 GUA|GURDB|RH-II/GU|RH-II/GuA no 24 2352 784 0.24908 0.39255 0.0714 0.2866 0.016519 0.104259262295082 0.036564 0.185225526315789 0.050843 0.349545625 0.546 8.52013 2 52_F_0.905,148_P_0.960 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DDX21 0.039863803 0.586040651 NA NA NA 2049 683 0.25239 0.2748 0.051 0.2022 0.011212 0.116665405405405 0.027686 0.26805625 0.035817 0.393987 0.302 21.05797 0 noneOver_0.9 0.259705926715688 N 0.0552843175102372 NA 0.259705926715688 Y 0.046992747391406 1 148 0.259705926715688 N 0.463496581674227 NA 0.259705926715688 N 0.0909058805314108 NA 0.259705926715688 N 1 3 148, 500, 719 DDX21_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank DDX21_all_part1 846 24 0.279597626583 0.269 N 0.0691 17 10, 31, 44, 58, 84, 96, 109, 170, 201, 242, 550, 705, 782, 796, 806, 821, 832 N 0.9212801509748152 0 na N 0.12119261747665333 0 na N 0.17552040061703517 0 na Y 0.0026718076851989644 0
+DNAJC11 DNAJC11 DNAJC11 nsp4 list26_COV_list4dataset2nonOrf DnaJ heat shock protein family (Hsp40) member C11 dJ126A5.1 no 23 1680 560 0.02848 0.37563 0.0119 0.4193 1 1 1 1 0.99889 1 NA NA NA DNAJC11 ENSMLUG00000016244.2 ENSMLUT00000016245.2 11 538 88.66171004 0.041426347 0.5631 1.15902 1.16651 -4039.894021 -4035.943317 0.019241151 -4037.422546 0.085429377 NA NA NA NA NA NA NA NA NA NA NA NA NA NA DNAJC11 1 1 NA NA NA 1275 425 0.02296 0.18685 0.0054 0.2346 1 1 1 1 0.99958 1 NA NA NA 0.0296617820839498 N 0.998885621381959 NA 0.0296617820839498 N 0.998892613604969 NA 0.0296617820839498 N 0.999999999556621 NA 0.0296617820839498 N 0.999990021821974 NA 0.0296617820839498 N 1 0 DNAJC11_sequences_filtered_longestORFs_mafft_mincov_prank DNAJC11_all 744 24 0.053610317516 0.053 N 0.9975 3 122, 132, 458 N 0.9635426191719061 0 na N 0.05232358045366291 0 na N 0.9990004998331715 0 na N 0.16235012670335852 0 na
+DNAJC19 DNAJC19 DNAJC19 nsp7 list24_COV_list2nonOrf DnaJ heat shock protein family (Hsp40) member C19 PAM18|TIM14|TIMM14 no 24 351 117 0.06151 0.19118 0.0147 0.2396 1 1 1 1 0.99993 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 330 110 0.07254 0.17571 0.0156 0.2151 1 1 1 1 0.99995 1 NA NA NA 0.0795979455000783 N 0.999818016561 NA 0.0795979455000783 N 0.999915003612385 NA 0.0795979455000783 N 0.999999961309187 NA 0.0795979455000783 N 0.992733726265863 NA 0.0795979455000783 N 1 0 DNAJC19_sequences_filtered_longestORFs_D418gp2_prank DNAJC19_418-2 165 17 0.786428940683 0.430 N 1.0000 0 na N 0.9999999790982204 0 na N 0.9989453490637974 0 na N 1.0 0 na N 1.0 0 na
+DNMT1 DNMT1 DNMT1 orf8 list23_COV_list1orf DNA methyltransferase 1 ADCADN|AIM|CXXC9|DNMT|HSN1E|MCMT|m.HsaI no 24 4899 1633 0.07087 0.56215 0.0439 0.6195 0.049362 0.228968313253012 0.019073 0.122385083333333 0.022625 0.189361413043478 1.08 3.39424 6 15_V_0.928,121_G_0.900,151_R_0.934,154_P_0.921,162_G_0.937,1419_A_0.905 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DNMT1 1 1 NA NA NA 3432 1144 0.13202 0.24532 0.0322 0.2437 3.574e-05 0.0013863465 9.6131e-05 0.0037010435 0.00020218 0.00864881111111111 0.765 12.91917 7 90_G_0.976,112_P_0.981,120_G_0.990,123_A_0.936,208_P_0.914,250_S_0.918,700_L_0.905 0.0842159313698188 Y 0.0226125775216904 0 0.0842159313698188 Y 0.00555603808145051 0 0.0842159313698188 N 0.997283643713993 NA 0.0842159313698188 Y 1.49137108778222e-08 10 226, 1097, 874, 1419, 15, 274, 121, 154, 1148, 286 0.0842159313698188 Y 0 28 15, 27, 66, 68, 99, 101, 115, 118, 139, 147, 149, 154, 161, 162, 165, 179, 188, 225, 241, 288, 301, 324, 356, 873, 1088, 1097, 1250, 1532 DNMT1_sequences_filtered_longestORFs_mafft_mincov_prank DNMT1_all 2343 24 0.081848247223 0.063 Y 0.0000 7 413, 429, 565, 579, 606, 745, 2169 Y 2.0669482035016898e-16 2 745, 2169 Y 2.0168311185278022e-28 5 429, 745, 917, 1814, 2169 Y 1.0454601661378748e-23 3 251, 745, 2169 Y 2.1202898262187422e-30 5 251, 579, 745, 2085, 2169
+DPH5 DPH5 DPH5 orf9b list25_COV_list3dataset2orf diphthamide biosynthesis 5 AD-018|CGI-30|HSPC143|NPD015 no 24 864 288 0.16124 0.45711 0.0616 0.3821 1 1 1 1 1 1 NA NA NA DPH5 ENSMLUG00000012639.2 ENSMLUT00000012641.2 9 285 89.12280702 0.075085407 6.0816 12.7134 12.71389 -2883.965457 -2883.965869 0.999588085 NA NA NA DPH5 ENSG00000117543.20 ENST00000427040.2 18 47 93.61702128 0.374482718 0.2169 0.74627 0.75015 -347.53853 -347.358466 0.835216756 NA NA NA DPH5 1 1 NA NA NA 726 242 0.25724 0.30547 0.056 0.2176 0.85476 1 0.91658 1 0.98338 1 NA NA NA 0.167573937586777 N 1 NA 0.167573937586777 N 0.999962000721859 NA 0.167573937586777 N 0.99999448992202 NA 0.167573937586777 N 0.998228905439093 NA 0.167573937586777 N 1 2 207, 257 DPH5_sequences_filtered_longestORFs_mafft_mincov_prank DPH5_all 442 24 0.152405412870 0.161 N 0.0644 7 210, 241, 244, 275, 343, 348, 369 Y 0.000553882037864914 2 241, 369 Y 9.638729171315118e-08 2 241, 369 Y 0.0003615898498301604 2 241, 369 Y 4.386407513280553e-06 2 241, 369
+DPY19L1 DPY19L1 DPY19L1 orf9c list26_COV_list4dataset2nonOrf dpy-19 like C-mannosyltransferase 1 - no 24 2247 749 0.12771 0.623 0.07 0.5478 1 1 1 1 1 1 NA NA NA DPY19L1 ENSMLUG00000013912.2 ENSMLUT00000013920.2 10 654 95.10703364 0.066641354 0.8845 1.9287 3.7297 -6487.933389 -6444.860734 1.97e-19 -6478.465185 2.44e-16 2 R421, S422 NA NA NA NA NA NA NA NA NA NA NA NA NA DPY19L1 1 1 NA NA NA 1863 621 0.13685 0.36378 0.0436 0.3185 1 1 1 1 1 1 NA NA NA 0.131912041551189 na NA NA 0.131912041551189 na NA NA 0.131912041551189 N 0.999999849557309 NA 0.131912041551189 N 0.356523883404974 NA 0.131912041551189 N 1 0 DPY19L1_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank DPY19L1_all_part2 914 20 0.106997851070 0.095 N 1.0000 0 na N 0.9999988437509592 0 na N 0.2992555688487431 0 na N 1.0 0 na N 0.6757041139607441 0 na
+ECSIT ECSIT ECSIT orf9c list24_COV_list2nonOrf ECSIT signalling integrator SITPEC no 24 1296 432 0.31623 0.90186 0.2021 0.6392 0.15025 0.488205882352941 0.24592 0.657494444444444 0.37676 1 NA NA NA ECSIT ENSMLUG00000016345.2 ENSMLUT00000016348.2 15 435 85.74712644 0.221887414 0.4374 1.97602 2.01283 -4572.631364 -4571.373419 0.284237535 NA NA NA ECSIT ENSG00000130159.13 ENST00000586149.1 17 24 91.66666667 0.383453897 0.1253 0.56044 0.59422 -148.405029 -148.085679 0.726621187 NA NA NA ECSIT 0.235323181 1 NA NA NA 885 295 0.30601 0.50394 0.1098 0.3589 0.76327 1 0.94186 1 1 1 NA NA NA 0.454650314699525 N 0.376727561994151 NA 0.454650314699525 N 0.245984931251765 NA 0.454650314699525 N 0.59990065906977 NA 0.454650314699525 N 0.141321407194829 NA 0.454650314699525 N 0.7493 3 11, 101, 247 ECSIT_sequences_filtered_longestORFs_mafft_mincov_prank ECSIT_all 1436 23 0.313480036259 0.265 N 0.8284 14 104, 119, 123, 136, 138, 153, 181, 215, 286, 326, 1058, 1123, 1153, 1174 N 0.9999953167999206 0 na N 0.9999656179596921 0 na N 1.0 0 na N 0.06210057691441663 0 na
+EDEM3 EDEM3 EDEM3 orf8 list25_COV_list3dataset2orf ER degradation enhancing alpha-mannosidase like protein 3 C1orf22 no 24 2799 933 0.10859 0.28055 0.0285 0.2627 0.011922 0.08196375 0.011881 0.0914837 0.043177 0.307836018518519 0.692 4.73014 2 843_H_0.920,852_T_0.970 EDEM3 ENSMLUG00000013699.2 ENSMLUT00000013715.2 6 865 97.91907514 0.123634396 0.4858 0.76776 0.77242 -5826.650036 -5825.427114 0.294368763 NA NA NA EDEM3 ENSG00000116406.18 ENST00000367512.7 18 906 97.46136865 0.088261229 0.1148 0.24563 0.24588 -4889.688288 -4889.259337 0.651191837 NA NA NA EDEM3 0.993819675 1 NA NA NA 2409 803 0.11726 0.19769 0.0218 0.1855 0.05753 0.372389672131148 0.10846 0.71995 0.16368 1 0.487 7.23505 1 725_H_0.919 0.119172056461783 Y 0.0431739920891953 0 0.119172056461783 Y 0.0101887511060499 1 852 0.119172056461783 N 0.142617371320197 NA 0.119172056461783 Y 0.00973642957301912 1 852 0.119172056461783 N 0.9467 2 28, 846 EDEM3_sequences_filtered_longestORFs_mafft_mincov_prank EDEM3_all 1395 24 0.141168127030 0.134 N 0.5452 4 16, 19, 1181, 1237 Y 4.901883242434099e-38 1 1181 Y 7.828310541947127e-50 1 1181 Y 7.552046806868053e-39 1 1181 na na 0 na
+EIF4E2 EIF4E2 EIF4E2 nsp2 list26_COV_list4dataset2nonOrf eukaryotic translation initiation factor 4E family member 2 4E-LP|4EHP|EIF4EL3|IF4e|h4EHP no 23 738 246 0.03395 0.21063 0.0077 0.2281 1 1 1 1 0.8217 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 630 210 0.02442 0.155 0.0044 0.1816 1 1 1 1 0.99984 1 NA NA NA 0.0353186344275995 N 0.821493708570276 NA 0.0353186344275995 N 0.383040328117009 NA 0.0353186344275995 N 0.85819166979262 NA 0.0353186344275995 N 0.11431013358696 NA 0.0353186344275995 N 1 0 EIF4E2_sequences_filtered_longestORFs_mafft_mincov_prank EIF4E2_all 807 24 0.232675533751 0.241 Y 0.0000 4 110, 351, 536, 672 N 0.9999999927376848 0 na N 0.5233031918651796 0 na Y 4.675171455053596e-09 3 591, 592, 672 Y 2.042686466690582e-09 4 591, 592, 643, 672
+EIF4H EIF4H EIF4H nsp9 list26_COV_list4dataset2nonOrf eukaryotic translation initiation factor 4H WBSCR1|WSCR1|eIF-4H no 23 750 250 0.20373 0.49924 0.0805 0.3949 0.19382 0.561057894736842 0.33611 0.803741304347826 1 1 NA NA NA EIF4H ENSMLUG00000009053.2 ENSMLUT00000009050.2 9 233 79.39914163 0.067710536 0.247 0.48058 0.47892 -1156.799444 -1155.092524 0.181423718 NA NA NA EIF4H ENSG00000106682.14 ENST00000353999.6 8 229 93.44978166 0.65726891 0.2049 0.43151 0.43484 -1388.238382 -1388.067762 0.843141907 NA NA NA EIF4H 0.975645425 1 NA NA NA 579 193 0.1625 0.31982 0.0469 0.2883 1 1 1 1 1 1 NA NA NA 0.223611042863373 na NA NA 0.223611042863373 na NA NA 0.223611042863373 N 0.776725763502386 NA 0.223611042863373 N 0.558986781279713 NA 0.223611042863373 na NA 0 EIF4H_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank EIF4H_all_part1 557 23 0.119037210760 0.131 N 1.0000 0 na N 0.9999999828753517 0 na N 0.9999820282085377 0 na N 1.0 0 na N 1.0 0 na
+EMC1 EMC1 EMC1 orf8 list25_COV_list3dataset2orf ER membrane protein complex subunit 1 CAVIPMR|KIAA0090 no 22 2991 997 0.11747 0.43283 0.046 0.3913 0.1509 0.488205882352941 0.21129 0.600741544117647 0.38274 1 NA NA NA EMC1 ENSMLUG00000001556.2 ENSMLUT00000001561.2 11 998 96.89378758 0.082617467 0.3467 0.90202 0.91226 -7919.562518 -7916.895299 0.069445084 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EMC1 0.810838121 1 NA NA NA 2442 814 0.0991 0.26514 0.025 0.2525 0.44106 1 0.73813 1 0.74199 1 NA NA NA 0.135207577271735 N 0.382735932069733 NA 0.135207577271735 N 0.350258789201516 NA 0.135207577271735 N 0.457358710027911 NA 0.135207577271735 Y 8.99992557760581e-06 7 384, 357, 8, 14, 18, 19, 382 0.135207577271735 Y 0 5 8, 18, 382, 383, 384 EMC1_sequences_filtered_longestORFs_mafft_mincov_prank EMC1_all 1180 24 0.099734656206 0.095 Y 0.0000 5 12, 15, 52, 78, 465 Y 4.157921284243231e-05 1 78 Y 1.9002749520375142e-12 6 12, 18, 78, 369, 465, 899 Y 1.7175957015159544e-05 1 78 Y 2.1066429277598233e-07 2 12, 78
+ERC1 ERC1 ERC1 nsp13 list26_COV_list4dataset2nonOrf ELKS/RAB6-interacting/CAST family member 1 Cast2|ELKS|ERC-1|RAB6IP2 no 23 3372 1124 0.03114 0.36432 0.0126 0.4043 0.99056 1 1 1 1 1 NA NA NA ERC1 ENSMLUG00000008287.2 ENSMLUT00000008314.2 10 932 95.60085837 0.021071587 0.3414 0.49232 0.49314 -5619.619103 -5618.773256 0.429193677 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ERC1 0.991406686 1 NA NA NA 2814 938 0.041 0.24883 0.0108 0.2625 0.99661 1 0.57235 1 1 1 NA NA NA 0.0329276160526931 N 1 NA 0.0329276160526931 N 0.984746530861471 NA 0.0329276160526931 N 0.999997430407011 NA 0.0329276160526931 N 0.0887676514922869 NA 0.0329276160526931 N 1 1 876 ERC1_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank ERC1_all_part2 2964 23 0.028298194705 0.026 N 1.0000 2 1032, 1650 N 0.9999997397626769 0 na Y 0.033457191003739346 1 1157 N 1.0 0 na na na 0 na
+ERGIC1 ERGIC1 ERGIC1 nsp10 list24_COV_list2nonOrf endoplasmic reticulum-golgi intermediate compartment 1 AMCN|ERGIC-32|ERGIC32|NET24 no 24 873 291 0.01551 0.43192 0.0116 0.7458 1 1 1 1 1 1 NA NA NA ERGIC1 ENSMLUG00000009783.2 ENSMLUT00000009784.2 11 255 80 0.124503375 0.5262 51.43345 51.43347 -2688.831553 -2688.832073 0.999480135 NA NA NA ERGIC1 ENSG00000113719.15 ENST00000519796.5 19 54 94.44444444 0.243017671 0.1918 0.63351 0.88712 -364.327009 -360.880333 0.031851334 -364.22746 0.009672413 1 P49 ERGIC1 0.988383036 1 NA NA NA 612 204 0.01329 0.15529 0.0041 0.3077 1 1 1 1 0.99995 1 NA NA NA 0.0298381504686499 N 0.999257275956094 NA 0.0298381504686499 N 0.999257275956094 NA 0.0298381504686499 N 0.999999999995225 NA 0.0298381504686499 N 0.99999001949119 NA 0.0298381504686499 N 1 0 ERGIC1_sequences_filtered_longestORFs_mafft_mincov_prank ERGIC1_all 2087 24 0.023345501207 0.031 N 0.1159 3 716, 881, 1888 N 0.999999995759481 0 na N 0.999999995701728 0 na N 0.47568471864150097 0 na N 0.09807723484934663 0 na
+ERLEC1 ERLEC1 ERLEC1 orf8 list25_COV_list3dataset2orf endoplasmic reticulum lectin 1 C2orf30|CIM|CL24936|CL25084|HEL117|XTP3-B|XTP3TPB yes 24 1452 484 0.11441 0.31978 0.0361 0.3156 0.0019924 0.0229731764705882 0.0075726 0.0647878 0.0099282 0.10485527027027 0.912 6.7714 3 14_G_0.985,310_P_0.959,318_V_0.984 ERLEC1 ENSMLUG00000016924.2 ENSMLUT00000016927.2 10 496 87.90322581 0.133685784 0.1944 0.46346 0.46745 -2827.547059 -2827.123573 0.654760342 NA NA NA ERLEC1 ENSG00000068912.13 ENST00000378239.5 11 430 99.30232558 0.056894751 0.0834 0.11564 0.11758 -2022.182643 -2021.243196 0.390843912 NA NA NA ERLEC1 1 1 NA NA NA 1254 418 0.11955 0.22632 0.0274 0.2296 0.038858 0.311673541666667 0.11694 0.734170161290323 0.1235 0.963556862745098 0.487 9.25976 1 273_V_0.976 0.127134730622594 Y 0.00203507623270557 2 14, 318 0.127134730622594 Y 0.00100617426163953 3 14, 310, 318 0.127134730622594 Y 0.00564737043232802 1 318 0.127134730622594 Y 9.19106625484169e-07 3 310, 318, 14 0.127134730622594 Y 1e-04 2 14, 59 ERLEC1_sequences_filtered_longestORFs_mafft_mincov_prank ERLEC1_all 948 24 0.104367811799 0.091 N 0.7714 1 594 N 0.08373381050046967 0 na Y 1.208691486785895e-05 3 80, 84, 594 N 0.13614973585056028 0 na Y 0.008906267825990811 1 594
+ERMP1 ERMP1 ERMP1 orf9c list24_COV_list2nonOrf endoplasmic reticulum metallopeptidase 1 FXNA|KIAA1815|bA207C16.3 no 24 2727 909 0.16093 0.4408 0.0587 0.3649 0.18911 0.560856153846154 0.21221 0.600741544117647 0.22666 0.969601111111111 NA NA NA ERMP1 ENSMLUG00000002419.2 ENSMLUT00000002424.2 10 794 99.37027708 0.116046819 0.3082 0.87456 0.87518 -6355.754476 -6355.716447 0.962685023 NA NA NA ERMP1 ENSG00000099219.13 ENST00000487088.5 19 352 98.86363636 0.138268187 0.1396 0.3606 0.36081 -2174.679364 -2174.677461 0.99809881 NA NA NA ERMP1 0.858106691 1 NA NA NA 2217 739 0.15328 0.26405 0.0345 0.2251 0.89125 1 0.8537 1 0.99145 1 NA NA NA 0.170970979989748 N 0.222327668737802 NA 0.170970979989748 N 0.209648282001986 NA 0.170970979989748 N 0.563877499945935 NA 0.170970979989748 N 0.0639178661276591 NA 0.170970979989748 N 1 2 27, 66 ERMP1_sequences_filtered_longestORFs_mafft_mincov_prank ERMP1_all 1474 24 0.146897076813 0.144 N 1.0000 1 1029 N 0.9999994656338067 0 na N 0.4670119434862723 0 na N 1.0 0 na N 0.41644536602029525 0 na
+ERO1LB ERO1B ERO1LB orf8 list23_COV_list1orf elongin B SIII|TCEB2 no 24 1404 468 0.15134 0.29031 0.0379 0.2503 0.18383 0.556234765625 0.35896 0.812938823529412 0.43446 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ERO1B ENSG00000086619.13 ENST00000366589.1 16 71 100 0.049074312 0.1459 0.14276 0.14414 -332.486487 -332.12016 0.693276063 NA NA NA ERO1LB 0.963362268 1 NA NA NA 1188 396 0.15311 0.16919 0.0223 0.146 1 1 1 1 1 1 NA NA NA 0.16949166102658 N 0.434082791174467 NA 0.16949166102658 N 0.41024366128109 NA 0.16949166102658 N 0.532743036779515 NA 0.16949166102658 N 0.0539531477091255 NA 0.16949166102658 N 1 0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
+ERP44 ERP44 ERP44 orf8 list23_COV_list1orf endoplasmic reticulum protein 44 PDIA10|TXNDC4 no 21 1221 407 0.0756 0.16966 0.0134 0.177 1 1 1 1 0.9998 1 NA NA NA ERP44 ENSMLUG00000011752.2 ENSMLUT00000011749.2 10 407 94.34889435 0.141535311 0.2403 0.49346 0.49686 -2435.949038 -2435.276063 0.510188507 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ERP44 0.295409685 1 NA NA NA 1107 369 0.10469 0.12605 0.0133 0.127 1 1 1 1 0.99989 1 NA NA NA 0.0711453780696183 N 0.999795021011241 NA 0.0711453780696183 N 0.999796020806645 NA 0.0711453780696183 N 0.999999893579576 NA 0.0711453780696183 N 0.976530717943008 NA 0.0711453780696183 N 1 0 ERP44_sequences_filtered_longestORFs_mafft_mincov_prank ERP44_all 490 24 0.061612699441 0.061 N 1.0000 0 na N 0.9999996678757822 0 na N 0.9817544807540798 0 na N 1.0 0 na N 1.0 0 na
+ETFA ETFA ETFA M list26_COV_list4dataset2nonOrf electron transfer flavoprotein subunit alpha EMA|GA2|MADD no 24 1005 335 0.13168 0.35074 0.0413 0.3138 1 1 1 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ETFA 0.479248898 1 NA NA NA 837 279 0.16675 0.19725 0.0282 0.1694 1 1 1 1 1 1 NA NA NA 0.132948529343078 N 1 NA 0.132948529343078 N 0.996655604989393 NA 0.132948529343078 N 0.999997880634937 NA 0.132948529343078 N 0.999684927728159 NA 0.132948529343078 N 1 0 ETFA_sequences_filtered_longestORFs_mafft_mincov_prank ETFA_all 565 24 0.146391319474 0.142 N 0.4242 0 na N 0.9999989998773798 0 na N 0.9999999456895253 0 na N 1.0 0 na N 1.0 0 na
+EXOSC2 EXOSC2 EXOSC2 nsp8 list24_COV_list2nonOrf exosome component 2 RRP4|Rrp4p|SHRF|hRrp4p|p7 no 24 882 294 0.13906 0.58075 0.072 0.518 0.20088 0.57288 0.16395 0.509038306451613 0.43972 1 NA NA NA EXOSC2 ENSMLUG00000008776.2 ENSMLUT00000008779.2 8 296 98.98648649 0.024424073 0.4064 0.69537 0.69892 -2040.595915 -2039.325761 0.280788377 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EXOSC2 0.535813676 1 NA NA NA 717 239 0.15613 0.4294 0.0586 0.3751 0.28082 1 0.44689 1 0.5577 1 NA NA NA 0.146423532702838 N 0.470076420822916 NA 0.146423532702838 N 0.340682949861866 NA 0.146423532702838 N 0.289873592687608 NA 0.146423532702838 Y 9.41534406444387e-05 7 64, 65, 73, 45, 220, 54, 60 0.146423532702838 Y 0 2 60, 73 EXOSC2_sequences_filtered_longestORFs_mafft_mincov_prank EXOSC2_all 356 24 0.091497263455 0.086 Y 0.0029 1 273 N 0.39378783387535415 0 na Y 0.0031125919477734336 1 273 N 0.33187396687004317 0 na Y 0.004668114668763444 1 273
+EXOSC3 EXOSC3 EXOSC3 nsp8 list24_COV_list2nonOrf exosome component 3 CGI-102|PCH1B|RRP40|Rrp40p|bA3J10.7|hRrp-40|p10 no 24 834 278 0.20018 0.45795 0.0679 0.339 0.026965 0.1483075 0.064948 0.27478 0.086098 0.534640806451613 5.592 2.83124 4 4_G_0.946,5_V_0.983,60_C_0.964,97_G_0.943 NA NA NA NA NA NA NA NA NA NA NA NA NA EXOSC3 ENSG00000107371.12 ENST00000396521.3 19 165 92.72727273 0.218656939 0.1801 0.60416 0.62059 -1150.429321 -1148.780749 0.192324352 NA NA NA EXOSC3 1 1 NA NA NA 636 212 0.1116 0.24064 0.0246 0.2204 0.1418 0.6824125 0.33955 1 0.33824 1 NA NA NA 0.207806335062229 N 0.0969964402117615 NA 0.207806335062229 N 0.0573709041794532 NA 0.207806335062229 N 0.135063271490932 NA 0.207806335062229 Y 0.000547992029712038 4 97, 4, 5, 60 0.207806335062229 N 1 0 EXOSC3_sequences_filtered_longestORFs_mafft_mincov_prank EXOSC3_all 660 24 na na na na 0 na na na 0 na na na 0 na na na 0 na na na 0 na
+EXOSC5 EXOSC5 EXOSC5 nsp8 list24_COV_list2nonOrf exosome component 5 RRP41B|RRP46|Rrp46p|hRrp46p|p12B no 24 708 236 0.14785 0.54807 0.0734 0.4966 0.11544 0.414623611111111 0.12856 0.430396521739131 0.30715 1 NA NA NA EXOSC5 ENSMLUG00000013104.2 ENSMLUT00000013103.2 11 236 96.61016949 0.119799705 0.3784 1.00915 1.01642 -1908.268348 -1908.145027 0.883979859 NA NA NA EXOSC5 ENSG00000077348.8 ENST00000593771.1 16 133 98.4962406 0.243215764 0.1784 0.66897 0.72757 -1008.164727 -1003.142205 0.006587891 -1007.649985 0.002676909 2 S91, W93 EXOSC5 1 1 NA NA NA 474 158 0.14589 0.2939 0.0403 0.2765 0.03632 0.297514893617021 0.10835 0.71995 0.12433 0.963556862745098 1.425 7.51103 1 8_I_0.959 0.179898950214694 N 0.310960930529997 NA 0.179898950214694 N 0.123839612275013 NA 0.179898950214694 N 0.979699500093109 NA 0.179898950214694 N 0.849849440111418 NA 0.179898950214694 N 1 1 204 EXOSC5_sequences_filtered_longestORFs_mafft_mincov_prank EXOSC5_all 655 24 0.158412543907 0.144 N 0.0546 5 45, 75, 85, 195, 527 N 0.9999983293078317 0 na N 0.9999896164493057 0 na N 0.11452066407509162 0 na N 0.06056730820722026 0 na
+EXOSC8 EXOSC8 EXOSC8 nsp8 list24_COV_list2nonOrf exosome component 8 CIP3|EAP2|OIP2|PCH1C|RRP43|Rrp43p|bA421P11.3|p9 no 23 831 277 0.16492 0.41639 0.061 0.37 0.08173 0.324392268041237 0.11356 0.39746 0.21814 0.9543625 7.555 2.27778 2 70_S_0.979,76_K_0.926 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EXOSC8 0.763915432 1 NA NA NA 732 244 0.1998 0.30907 0.0519 0.2596 0.0037775 0.0469141129032258 0.0099798 0.118475 0.014981 0.192256166666667 4.977 4.53395 6 57_S_0.996,58_A_0.929,59_P_0.902,60_D_0.911,61_K_0.972,62_G_0.924 0.189305978457049 N 0.216696613100796 NA 0.189305978457049 N 0.142692830147174 NA 0.189305978457049 N 0.144295332879347 NA 0.189305978457049 Y 0.000265325105727637 9 70, 72, 73, 74, 75, 76, 77, 78, 79 0.189305978457049 Y 0 1 77 EXOSC8_sequences_filtered_longestORFs_mafft_mincov_prank EXOSC8_all 615 24 0.090310320350 0.095 N 0.5335 1 393 N 0.9999997629786602 0 na N 0.912799268290154 0 na N 1.0 0 na N 1.0 0 na
+F2RL1 F2RL1 F2RL1 orf9c list24_COV_list2nonOrf F2R like trypsin receptor 1 GPR11|PAR2 no 24 1194 398 0.21906 0.49746 0.0834 0.3809 0.54297 1 0.75811 1 0.83158 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F2RL1 ENSG00000164251.4 ENST00000296677.4 19 398 89.94974874 0.217466052 0.2177 0.64829 0.70554 -2682.34684 -2676.838331 0.004052145 -2681.73712 0.001747419 3 K41, S21, S37 NA NA NA NA NA 1005 335 0.22368 0.35318 0.0598 0.2675 1 1 0.98522 1 1 1 NA NA NA 0.227096587030141 N 0.831554864470143 NA 0.227096587030141 N 0.735047614672658 NA 0.227096587030141 N 0.999997298064967 NA 0.227096587030141 N 0.461387447889752 NA 0.227096587030141 N 1 2 21, 270 F2RL1_sequences_filtered_longestORFs_mafft_mincov_prank F2RL1_all 456 24 0.172965347235 0.174 N 0.8985 7 52, 93, 116, 117, 146, 197, 243 N 0.9999991196286157 0 na N 0.4428525110189645 0 na N 0.9980019986678341 0 na N 0.14198980780184772 0 na
+FAM134C RETREG3 FAM134C orf9c list24_COV_list2nonOrf reticulophagy regulator family member 3 - no 24 1401 467 0.18477 0.3476 0.0493 0.2669 0.41476 0.917716091954023 0.5193 1 0.71832 1 NA NA NA RETREG3 ENSMLUG00000001002.2 ENSMLUT00000001011.2 13 467 81.37044968 0.187634062 0.2437 0.83137 0.84208 -3170.863884 -3168.40824 0.085807917 NA NA NA RETREG3 ENSG00000141699.10 ENST00000590541.1 19 82 95.12195122 0.197804078 0.2055 0.45293 0.45293 -499.872999 -499.873027 0.999972 NA NA NA FAM134C 0.383568347 1 NA NA NA 1164 388 0.17208 0.21804 0.0299 0.1739 1 1 1 1 0.99988 1 NA NA NA 0.182937394961212 N 0.718348824439309 NA 0.182937394961212 N 0.51687097521549 NA 0.182937394961212 N 0.815199037699238 NA 0.182937394961212 N 0.575720447396037 NA 0.182937394961212 N 1 1 378 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
+FAM162A FAM162A FAM162A nsp7 list26_COV_list4dataset2nonOrf family with sequence similarity 162 member A C3orf28|E2IG5|HGTD-P no 24 468 156 0.78824 0.79174 0.2465 0.3127 0.10955 0.405545673076923 0.25724 0.669561824324324 0.28032 1 NA NA NA FAM162A ENSMLUG00000000941.2 ENSMLUT00000000941.2 12 156 75.64102564 0.444238485 0.4761 1.8729 1.88327 -1382.256543 -1381.452888 0.447689664 NA NA NA FAM162A ENSG00000114023.15 ENST00000469967.1 18 142 76.05633803 0.709364639 0.203 0.6908 0.69927 -839.142618 -836.007332 0.043487315 -839.131843 0.01242619 2 D65, F117 FAM162A 0.871744117 1 NA NA NA 372 124 1.22917 0.56264 0.1969 0.1602 0.046286 0.339787924528302 0.072164 0.544767450980392 0.072172 0.677712682926829 60.853 2.14101 2 53_D_0.922,82_I_0.965 0.782375402618848 N 0.280323495958189 NA 0.782375402618848 N 0.257603422174874 NA 0.782375402618848 N 0.418178066839617 NA 0.782375402618848 N 0.287135369254263 NA 0.782375402618848 N 0.3909 0 FAM162A_sequences_filtered_longestORFs_mafft_mincov_prank FAM162A_all 441 23 0.495702659669 0.486 N 0.0732 4 216, 248, 359, 417 N 0.9999982422493291 0 na N 0.9969494196392291 0 na N 0.8521437889663354 0 na N 1.0 0 na
+FAM8A1 FAM8A1 FAM8A1 M list26_COV_list4dataset2nonOrf family with sequence similarity 8 member A1 AHCP no 24 1248 416 0.34231 0.64012 0.1349 0.394 1 1 1 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAM8A1 ENSG00000137414.5 ENST00000259963.3 5 414 94.92753623 0.25653807 0.1723 0.35366 0.35383 -2310.944362 -2310.929873 0.98561546 NA NA NA FAM8A1 1 1 NA NA NA 768 256 0.30502 0.30989 0.0611 0.2005 0.95466 1 0.97397 1 0.99838 1 NA NA NA 0.341250527405916 N 1 NA 0.341250527405916 N 0.979880160499108 NA 0.341250527405916 N 0.999997452156612 NA 0.341250527405916 N 0.68511242375704 NA 0.341250527405916 N 1 2 99, 157 FAM8A1_sequences_filtered_longestORFs_mafft_mincov_prank FAM8A1_all 513 23 0.319375325659 0.315 Y 0.0000 7 39, 65, 157, 164, 196, 203, 429 N 0.8832244818632264 0 na N 0.3500512376933276 0 na N 1.0 0 na N 0.5504605431263127 0 na
+FAM98A FAM98A FAM98A N list26_COV_list4dataset2nonOrf family with sequence similarity 98 member A - no 24 1572 524 0.0412 0.21585 0.0092 0.2224 1 1 1 1 0.99963 1 NA NA NA FAM98A ENSMLUG00000002455.2 ENSMLUT00000002452.2 12 526 84.79087452 0.102934391 0.2089 0.51286 0.51334 -3021.009729 -3020.975453 0.966304768 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAM98A 1 1 NA NA NA 1377 459 0.04339 0.15011 0.0071 0.1639 1 1 1 1 0.99978 1 NA NA NA 0.0422563984937351 N 0.999639065152321 NA 0.0422563984937351 N 0.999614074488708 NA 0.0422563984937351 N 0.999999990798187 NA 0.0422563984937351 N 0.99996718755293 NA 0.0422563984937351 N 1 0 FAM98A_sequences_filtered_longestORFs_mafft_mincov_prank FAM98A_all 534 24 0.062431170167 0.063 N 0.1823 2 147, 463 N 0.9999984346830816 0 na N 0.9983244449715577 0 na N 0.9990004998331715 0 na N 0.9990004998331715 0 na
+FAR2 FAR2 FAR2 orf9c list24_COV_list2nonOrf fatty acyl-CoA reductase 2 HEL-S-81|MLSTD1|SDR10E2 no 23 1551 517 0.27553 0.53622 0.1029 0.3735 0.22466 0.613433333333333 0.25739 0.669561824324324 0.47255 1 NA NA NA FAR2 ENSMLUG00000014544.2 ENSMLUT00000014548.2 6 516 99.41860465 0.123976275 0.4296 0.91673 0.92826 -3793.745323 -3792.274584 0.229755633 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR2 1 1 NA NA NA 1302 434 0.32665 0.38533 0.0828 0.2534 0.010923 0.116665405405405 0.018428 0.197077222222222 0.039065 0.417778472222222 19 1.78557 5 241_S_0.979,246_L_0.978,252_H_0.931,281_S_0.920,301_F_0.936 0.284401930625868 N 0.472550811624588 NA 0.284401930625868 N 0.424931627274785 NA 0.284401930625868 N 0.480068088442192 NA 0.284401930625868 Y 0.000866258160401898 75 384, 257, 385, 3, 4, 133, 389, 263, 392, 9, 265, 266, 267, 268, 270, 143, 396, 398, 147, 148, 275, 22, 281, 282, 155, 285, 31, 292, 300, 305, 310, 56, 316, 61, 190, 320, 193, 322, 323, 198, 71, 72, 200, 329, 203, 332, 456, 460, 335, 340, 342, 87, 345, 346, 347, 92, 220, 221, 222, 223, 350, 351, 353, 356, 479, 359, 107, 367, 370, 381, 498, 247, 376, 251, 253 0.284401930625868 N 0.5729 1 310 FAR2_sequences_filtered_longestORFs_mafft_mincov_prank FAR2_all 600 23 0.182877187700 0.178 Y 0.0318 8 90, 258, 355, 361, 366, 390, 394, 426 N 0.9999987208547277 0 na Y 0.011029202919481548 7 38, 57, 350, 355, 390, 395, 434 N 1.0 0 na N 0.5548818892753271 0 na
+FASTKD5 FASTKD5 FASTKD5 M list26_COV_list4dataset2nonOrf FAST kinase domains 5 dJ1187M17.5 yes 24 2298 766 0.67059 0.70536 0.2053 0.3062 2.7703e-08 2.66641375e-06 1.2968e-07 9.98536e-06 2.0219e-07 1.94607875e-05 3.702 5.3533 8 41_Q_0.959,75_H_0.998,115_M_0.997,180_V_0.943,253_Y_0.953,257_K_0.948,329_S_0.990,720_N_0.919 FASTKD5 ENSMLUG00000000343.2 ENSMLUT00000000340.2 14 767 97.52281617 0.23719054 0.2971 1.29358 1.29944 -7754.59961 -7752.020331 0.075828657 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2013 671 0.64965 0.56536 0.1635 0.2517 3.4038e-06 0.0002184105 1.6149e-05 0.0010362275 2.161e-05 0.00138664166666667 2.928 6.1161 5 33_Q_0.973,152_V_0.963,224_Y_0.970,227_K_0.968,293_S_0.998 0.668187053603479 Y 9.88496330032487e-08 3 75, 115, 329 0.668187053603479 Y 6.32544092693817e-08 5 41, 75, 115, 253, 329 0.668187053603479 Y 2.97697153348315e-06 3 115, 329, 75 0.668187053603479 Y 2.73641082009479e-07 3 115, 329, 75 0.668187053603479 Y 0.0251 13 75, 115, 161, 180, 183, 185, 238, 258, 262, 399, 420, 618, 688 FASTKD5_sequences_filtered_longestORFs_mafft_mincov_prank FASTKD5_all 856 24 na na na na 0 na na na 0 na na na 0 na na na 0 na na na 0 na
+FBLN5 FBLN5 FBLN5 nsp9 list26_COV_list4dataset2nonOrf fibulin 5 ADCL2|ARCL1A|ARMD3|DANCE|EVEC|FIBL-5|HNARMD|UP50 no 24 1347 449 0.03177 0.34357 0.0124 0.3908 0.99314 1 0.60486 1 1 1 NA NA NA FBLN5 ENSMLUG00000011592.2 ENSMLUT00000011600.2 10 443 95.03386005 0.072138666 0.3908 1.02413 1.01319 -3407.255769 -3403.439564 0.022011175 -3404.234477 0.207350995 NA FBLN5 ENSG00000140092.14 ENST00000557570.1 14 36 91.66666667 0.162003072 0.1315 0.27035 0.39032 -175.924339 -169.671374 0.001924739 -175.883204 0.000423929 1 Q26 FBLN5 0.952555539 1 NA NA NA 1005 335 0.03055 0.20975 0.008 0.2623 0.77156 1 0.45009 1 0.95874 1 NA NA NA 0.0354960263746788 N 1 NA 0.0354960263746788 N 0.43307905178943 NA 0.0354960263746788 N 0.999998000700723 NA 0.0354960263746788 N 0.107671400139631 NA 0.0354960263746788 N 1 0 FBLN5_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank FBLN5_all_part2 833 23 0.030690326246 0.035 Y 0.0407 3 276, 435, 513 N 0.999999999134161 0 na N 0.4336451674061179 0 na N 1.0 0 na N 0.889585193163243 0 na
+FBN1 FBN1 FBN1 nsp9 list24_COV_list2nonOrf fibrillin 1 ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFLS|MFS1|OCTD|SGS|SSKS|WMS|WMS2 no 24 8622 2874 0.03922 0.35339 0.0151 0.385 0.060761 0.259155769230769 0.0051117 0.04685725 0.19201 0.886554166666667 0.191 3.70837 2 10_L_0.982,125_M_0.908 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBN1 1 1 NA NA NA 6828 2276 0.05084 0.19457 0.0115 0.227 0.90797 1 0.72665 1 0.99503 1 NA NA NA 0.0408392380705089 na NA NA 0.0408392380705089 na NA NA 0.0408392380705089 N 0.332855245237052 NA 0.0408392380705089 Y 7.75077258618593e-06 2 10, 2773 0.0408392380705089 N 1 0 FBN1_sequences_filtered_longestORFs_mafft_mincov_prank FBN1_all 3406 24 0.038434217562 0.039 N 0.8306 8 237, 351, 434, 527, 699, 1776, 2386, 2396 N 0.9999991758489827 0 na Y 5.104448658255552e-10 5 237, 351, 1651, 2474, 3171 N 0.9990004998331715 0 na Y 0.002831354669654163 1 237
+FBN2 FBN2 FBN2 nsp9 list24_COV_list2nonOrf fibrillin 2 CCA|DA9|EOMD no 24 8745 2915 0.06871 0.37544 0.0263 0.3835 0.37008 0.84406124260355 0.17475 0.525615234375 0.65545 1 NA NA NA FBN2 ENSMLUG00000008374.2 ENSMLUT00000008504.2 8 2914 94.47494852 0.016657993 0.3658 0.61556 0.61598 -17859.44955 -17857.26975 0.113063915 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBN2 1 1 NA NA NA 7026 2342 0.08992 0.21166 0.0192 0.2131 0.48817 1 0.72441 1 0.76977 1 NA NA NA 0.0723360487461725 N 0.671539124756131 NA 0.0723360487461725 Y 2.25307002996544e-08 1 2846 0.0723360487461725 N 0.726403770168304 NA 0.0723360487461725 Y 1.13006147292894e-08 6 2813, 151, 475, 2877, 2846, 2783 0.0723360487461725 Y 0 13 526, 527, 528, 941, 947, 949, 950, 1045, 1376, 2813, 2846, 2855, 2889 FBN2_sequences_filtered_longestORFs_D262gp2_prank FBN2_262-2 2986 23 0.058141909331 0.055 Y 0.0181 16 2, 17, 146, 151, 448, 535, 626, 1117, 1261, 1448, 2578, 2885, 2918, 2927, 2949, 2961 N 0.9999994367537278 0 na Y 2.137785086310192e-06 3 2859, 2918, 2949 N 1.0 0 na N 0.08399483249039745 0 na
+FBXL12 FBXL12 FBXL12 orf8 list23_COV_list1orf F-box and leucine rich repeat protein 12 Fbl12 no 24 981 327 0.06466 0.62178 0.05 0.7731 0.11156 0.409053333333333 0.030557 0.165459097222222 0.30813 1 1.298 2.70583 2 57_K_0.913,264_V_0.951 NA NA NA NA NA NA NA NA NA NA NA NA NA FBXL12 ENSG00000127452.8 ENST00000586073.1 16 135 91.85185185 0.574873298 0.1529 0.57689 0.58283 -925.793612 -925.653943 0.869646041 NA NA NA FBXL12 1 1 NA NA NA 735 245 0.06852 0.3738 0.0315 0.4602 0.067353 0.398937 0.16258 0.910776086956522 0.21116 1 0.49 13.3344 1 35_K_0.953 0.0940032308096287 N 0.284676736604035 NA 0.0940032308096287 Y 0.0231805665509324 1 264 0.0940032308096287 N 0.399844983564301 NA 0.0940032308096287 Y 0.0204254242225112 1 264 0.0940032308096287 N 0.6014 1 57 FBXL12_sequences_filtered_longestORFs_mafft_mincov_prank FBXL12_all 591 24 0.073022781587 0.055 N 0.1536 1 322 N 0.9999994807423247 0 na Y 0.03536570274492349 1 529 N 1.0 0 na Y 0.04504920239354142 0
+FGFR1OP CEP43 FGFR1OP nsp13 list26_COV_list4dataset2nonOrf FGFR1 oncogene partner FOP no 24 1200 400 0.17666 0.45373 0.0665 0.3766 1 1 1 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FGFR1OP 0.481654006 1 NA NA NA 981 327 0.18516 0.33883 0.054 0.2918 1 1 1 1 1 1 NA NA NA 0.195799072784536 N 1 NA 0.195799072784536 N 0.999998000001778 NA 0.195799072784536 N 0.999998943971253 NA 0.195799072784536 N 0.996934764311145 NA 0.195799072784536 N 1 0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
+FKBP10 FKBP10 FKBP10 orf8 list25_COV_list3dataset2orf FK506 binding protein 10 BRKS1|FKBP65|OI11|OI6|PPIASE|hFKBP65 no 24 1749 583 0.05854 0.48767 0.036 0.6153 1 1 0.80844 1 1 1 NA NA NA FKBP10 ENSMLUG00000011865.2 ENSMLUT00000011863.2 12 583 91.42367067 0.09180607 0.3317 1.12346 1.12763 -4623.843793 -4621.404193 0.087195723 NA NA NA FKBP10 ENSG00000141756.18 ENST00000455106.1 10 386 98.1865285 0.303872044 0.2268 0.56093 0.63872 -2473.075379 -2461.017224 5.8e-06 -2473.053949 9.27e-07 7 R112, K149, A154, D155, S143, Q157, G141 FKBP10 0.690158345 1 NA NA NA 1188 396 0.0486 0.24802 0.0155 0.3179 1 1 1 1 1 1 NA NA NA 0.093259844569964 N 1 NA 0.093259844569964 N 0.681359644431709 NA 0.093259844569964 N 0.999998454444552 NA 0.093259844569964 Y 0.0016519125064832 10 256, 3, 197, 6, 335, 499, 277, 441, 477, 575 0.093259844569964 N 1 1 477 FKBP10_sequences_filtered_longestORFs_mafft_mincov_prank FKBP10_all 762 24 0.105142268569 0.077 N 0.1334 5 186, 266, 290, 650, 684 N 0.9999997345549115 0 na N 0.7034130703651661 0 na N 1.0 0 na N 0.4733122312095017 0 na
+FKBP15 FKBP15 FKBP15 nsp2 list24_COV_list2nonOrf FK506 binding protein 15 FKBP133|KIAA0674|PPP1R76 no 24 3669 1223 0.36084 0.47497 0.1016 0.2815 0.055782 0.24535 0.11876 0.411370796460177 0.15808 0.76076 11.532 1.87074 2 970_Q_0.929,1040_L_0.933 FKBP15 ENSMLUG00000015278.2 ENSMLUT00000015293.2 9 1211 93.22873658 0.283789285 0.2849 1.02448 1.02768 -9968.379835 -9967.309891 0.343027726 NA NA NA FKBP15 ENSG00000119321.8 ENST00000238256.7 18 1220 96.8852459 0.276092563 0.1507 0.4982 0.49595 -8411.546874 -8409.134261 0.089580914 NA NA NA FKBP15 0.822906741 1 NA NA NA 3096 1032 0.44951 0.30322 0.0738 0.1642 1 1 1 1 1 1 NA NA NA 0.351847273757785 N 0.166742095268032 NA 0.351847273757785 N 0.142399470273479 NA 0.351847273757785 N 0.141589911694489 NA 0.351847273757785 N 0.0612693486860016 NA 0.351847273757785 Y 0 56 30, 50, 60, 61, 67, 73, 78, 97, 98, 99, 100, 147, 189, 352, 249, 258, 277, 313, 318, 353, 355, 356, 395, 397, 403, 439, 452, 484, 505, 537, 545, 551, 609, 685, 833, 846, 863, 876, 982, 997, 1001, 1006, 1013, 1018, 1030, 1044, 1052, 1069, 1074, 1083, 1136, 1146, 1147, 1159, 1163, 1179 FKBP15_sequences_filtered_longestORFs_mafft_mincov_prank FKBP15_all 2307 24 0.348522026055 0.368 N 0.0745 18 197, 220, 284, 379, 529, 670, 1072, 1128, 1226, 1864, 1873, 1925, 1942, 1971, 2056, 2233, 2247, 2272 N 0.727349884676276 0 na N 0.37093542957316483 0 na N 0.3008931682480237 0 na N 0.05442128136810543 0 na
+FKBP7 FKBP7 FKBP7 orf8 list23_COV_list1orf FK506 binding protein 7 FKBP23|PPIase no 23 669 223 0.18199 0.44825 0.0677 0.3723 0.87213 1 0.96773 1 1 1 NA NA NA FKBP7 ENSMLUG00000005816.2 ENSMLUT00000005820.2 13 223 90.13452915 0.132702183 0.3392 0.90653 0.90653 -1686.218543 -1686.218553 0.99999 NA NA NA FKBP7 ENSG00000079150.17 ENST00000412612.1 19 67 92.53731343 0.0657558 0.2131 0.32603 0.32604 -349.163973 -349.164088 0.999885007 NA NA NA NA NA NA NA NA 546 182 0.17325 0.33256 0.0498 0.2874 1 1 1 1 1 1 NA NA NA 0.19389815767529 N 1 NA 0.19389815767529 N 0.966051629026983 NA 0.19389815767529 N 0.999999302926214 NA 0.19389815767529 N 0.94347367262118 NA 0.19389815767529 N 1 0 FKBP7_sequences_filtered_longestORFs_mafft_mincov_prank FKBP7_all 391 24 0.170022738137 0.178 N 0.1511 2 21, 369 N 0.9999977482400823 0 na N 0.9838865974223817 0 na Y 0.04285212686703629 0 Y 0.025706793075600774 0
+FOXRED2 FOXRED2 FOXRED2 orf8 list25_COV_list3dataset2orf FAD dependent oxidoreductase domain containing 2 ERFAD no 24 2055 685 0.14696 0.6933 0.1031 0.7014 1 1 0.94946 1 1 1 NA NA NA FOXRED2 ENSMLUG00000015845.2 ENSMLUT00000015850.2 11 687 94.46870451 0.153632497 0.3489 1.27604 1.28555 -6076.886155 -6075.060307 0.16108099 NA NA NA FOXRED2 ENSG00000100350.14 ENST00000423980.1 18 86 100 0.260056426 0.3509 0.76529 0.76529 -605.489707 -605.489713 0.999994 NA NA NA FOXRED2 1 1 NA NA NA 1338 446 0.13198 0.34456 0.0479 0.3626 1 1 1 1 1 1 NA NA NA 0.228706564096674 N 1 NA 0.228706564096674 N 0.947938170354272 NA 0.228706564096674 N 0.999996568993512 NA 0.228706564096674 N 0.0874537819320534 NA 0.228706564096674 N 0.3291 3 6, 113, 650 FOXRED2_sequences_filtered_longestORFs_mafft_mincov_prank FOXRED2_all 1173 24 0.191970360300 0.133 N 0.1980 8 79, 114, 120, 352, 427, 867, 885, 903 N 0.9999983380435137 0 na N 0.06957879480939025 0 na N 1.0 0 na N 0.07265740261039663 0 na
+FYCO1 FYCO1 FYCO1 nsp13 list26_COV_list4dataset2nonOrf FYVE and coiled-coil domain containing 1 CATC2|CTRCT18|RUFY3|ZFYVE7 yes 24 4437 1479 0.2811 0.60832 0.1223 0.435 0.0020288 0.0229731764705882 0.00034533 0.00582421304347826 0.008976 0.10164 9.973 1.79173 4 447_R_0.971,483_W_0.931,552_M_0.971,928_C_0.963 FYCO1 ENSMLUG00000006996.2 ENSMLUT00000007021.2 4 1482 99.1902834 0.213034363 0.3531 0.61438 0.62398 -8625.1382 -8624.09648 0.352847262 NA NA NA FYCO1 ENSG00000163820.14 ENST00000535325.5 18 1499 91.59439626 0.240037437 0.1681 0.56578 0.58664 -10005.83984 -9983.757336 2.57e-10 -10002.21112 1.24e-09 5 R800, M552, P759, S974, R447 FYCO1 1 1 NA NA NA 3528 1176 0.23148 0.38064 0.0706 0.305 1 1 0.82377 1 1 1 NA NA NA 0.34233647739497 Y 0.0089760173255098 0 0.34233647739497 Y 0.000346628484995005 3 447, 552, 928 0.34233647739497 Y 0.0273557966098862 0 0.34233647739497 Y 0.000962275914079919 2 552, 447 0.34233647739497 N 0.1929 11 184, 207, 471, 555, 580, 726, 862, 867, 1100, 1217, 1265 FYCO1_sequences_filtered_longestORFs_mafft_mincov_prank FYCO1_all 1663 24 0.328824144839 0.235 Y 0.0013 38 136, 163, 278, 383, 432, 443, 494, 499, 508, 511, 573, 609, 619, 627, 653, 679, 680, 779, 818, 853, 920, 935, 970, 981, 1069, 1111, 1121, 1153, 1164, 1269, 1270, 1287, 1293, 1310, 1311, 1318, 1498, 1523 Y 0.0153341304108026 0 Y 0.0005174023095309059 2 475, 605 Y 0.0019323855559132215 0 Y 8.564970983330033e-08 3 475, 605, 981
+G3BP1 G3BP1 G3BP1 N list24_COV_list2nonOrf G3BP stress granule assembly factor 1 G3BP|HDH-VIII no 22 1401 467 0.07189 0.23663 0.0159 0.2217 1 1 1 1 0.99967 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA G3BP1 0.815160905 1 NA NA NA 1224 408 0.1046 0.16582 0.0149 0.1429 0.80507 1 1 1 0.99987 1 NA NA NA 0.0675216675852328 N 0.999673053458475 NA 0.0675216675852328 N 0.999977000264442 NA 0.0675216675852328 N 0.999999984408532 NA 0.0675216675852328 N 0.999979848021449 NA 0.0675216675852328 N 1 0 G3BP1_sequences_filtered_longestORFs_mafft_mincov_prank G3BP1_all 809 23 0.116495516837 0.130 Y 0.0000 2 310, 516 N 0.9999996229940535 0 na N 0.9998159116523289 0 na N 1.0 0 na N 1.0 0 na
+G3BP2 G3BP2 G3BP2 N list24_COV_list2nonOrf G3BP stress granule assembly factor 2 - no 24 1449 483 0.02978 0.21311 0.0077 0.2588 1 1 1 1 0.99966 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA G3BP2 0.910244802 1 NA NA NA 1281 427 0.03932 0.16116 0.0077 0.1953 1 1 1 1 0.99981 1 NA NA NA 0.0339208130579082 N 0.99966105745384 NA 0.0339208130579082 N 0.999662057115281 NA 0.0339208130579082 N 0.999999987914635 NA 0.0339208130579082 N 0.999990020810171 NA 0.0339208130579082 N 1 0 G3BP2_sequences_filtered_longestORFs_mafft_mincov_prank G3BP2_all 707 24 0.113306470399 0.102 N 1.0000 0 na N 0.9999999799033505 0 na N 0.9799314289805671 0 na N 0.9990004998331715 0 na N 0.9990004998331715 0 na
+GCC1 GCC1 GCC1 nsp13 list26_COV_list4dataset2nonOrf GRIP and coiled-coil domain containing 1 GCC1P|GCC88 no 23 2328 776 0.13435 0.47829 0.0579 0.431 0.093842 0.36131865 0.067899 0.284142554347826 0.24919 1 3.021 2.19133 1 209_A_0.947 GCC1 ENSMLUG00000017118.2 ENSMLUT00000017123.2 13 776 98.58247423 0.123138883 0.3387 1.04423 1.05336 -6797.078765 -6795.84013 0.289779497 NA NA NA GCC1 ENSG00000179562.2 ENST00000321407.2 18 776 99.61340206 0.103231565 0.1821 0.43935 0.44071 -5024.601814 -5023.7418 0.423156158 NA NA NA GCC1 1 1 NA NA NA 1902 634 0.15695 0.34656 0.0463 0.295 0.059002 0.372389672131148 0.091124 0.64968037037037 0.17135 1 0.651 5.63198 1 161_A_0.942 0.167697437531052 N 0.249159257154326 NA 0.167697437531052 N 0.0646591275281096 NA 0.167697437531052 N 0.434993669642131 NA 0.167697437531052 N 0.132515086305605 NA 0.167697437531052 N 0.783 2 209, 399 GCC1_sequences_filtered_longestORFs_mafft_mincov_prank GCC1_all 786 24 0.140108711944 0.112 N 0.8781 7 136, 141, 186, 210, 243, 400, 631 N 0.9999998427856677 0 na N 0.0837780362668937 0 na N 0.7842715137719616 0 na N 0.05948684995596509 0 na
+GCC2 GCC2 GCC2 nsp13 list26_COV_list4dataset2nonOrf GRIP and coiled-coil domain containing 2 GCC185|RANBP2L4|REN53 yes 24 5070 1690 0.35761 0.53488 0.1192 0.3332 0.0010147 0.012208109375 0.0024219 0.0253382027027027 0.0038145 0.0473736290322581 0.603 8.0558 4 103_I_0.952,610_H_0.928,801_C_0.958,1534_A_0.955 NA NA NA NA NA NA NA NA NA NA NA NA NA GCC2 ENSG00000135968.20 ENST00000309863.10 16 1685 91.5727003 0.246708991 0.1682 0.49914 0.50374 -10661.09777 -10659.54568 0.211803992 NA NA NA GCC2 0.235479504 1 NA NA NA 4518 1506 0.39793 0.42669 0.1005 0.2527 0.002449 0.0314288333333333 0.010155 0.118475 0.079076 0.7009975 0.394 9.99215 3 93_I_0.975,732_C_0.974,862_P_0.900 0.342793171044169 Y 0.0399622508184415 0 0.342793171044169 Y 0.0143928748059334 2 801, 1534 0.342793171044169 N 0.92136585059044 NA 0.342793171044169 N 0.526256242398707 NA 0.342793171044169 Y 0 10 103, 670, 801, 901, 939, 959, 961, 1198, 1496, 1534 GCC2_sequences_filtered_longestORFs_mafft_mincov_prank GCC2_all 2086 23 0.302010959802 0.303 Y 0.0000 17 272, 484, 725, 840, 854, 962, 978, 1009, 1030, 1079, 1119, 1160, 1162, 1221, 1354, 1420, 1849 N 0.9299629112699199 0 na Y 0.04692042024176004 0 Y 0.0003740952925822641 0 Y 7.257937161707046e-07 3 712, 989, 1887
+GDF15 GDF15 GDF15 orf8 list23_COV_list1orf growth differentiation factor 15 GDF-15|MIC-1|MIC1|NAG-1|PDF|PLAB|PTGFB no 24 927 309 0.3142 0.9345 0.2073 0.6598 0.28141 0.693194936708861 0.18872 0.554079166666667 0.53676 1 NA NA NA GDF15 ENSMLUG00000002100.2 ENSMLUT00000002100.2 10 317 76.34069401 0.431348518 0.3741 1.80936 1.913 -2834.255536 -2828.759219 0.004101851 -2833.271339 0.002664227 1 R184 GDF15 ENSG00000130513.6 ENST00000252809.3 16 309 99.02912621 0.472097597 0.1642 0.69182 0.71146 -2397.029019 -2396.63771 0.676171187 NA NA NA NA NA NA NA NA 450 150 0.37175 0.45028 0.1036 0.2787 0.62699 1 0.88607 1 0.88849 1 NA NA NA 0.47877831462824 N 0.543493789146358 NA 0.47877831462824 N 0.19895372877761 NA 0.47877831462824 N 0.685093875226587 NA 0.47877831462824 N 0.513865539786659 NA 0.47877831462824 N 0.7001 2 49, 68 GDF15_sequences_filtered_longestORFs_mafft_mincov_prank GDF15_all 649 22 0.428031914784 0.282 N 0.9834 9 154, 193, 240, 328, 390, 391, 395, 564, 600 N 0.9999967579508652 0 na N 0.40726170973963327 0 na N 1.0 0 na Y 0.04183591909302521 0
+GFER GFER GFER nsp10 list24_COV_list2nonOrf growth factor, augmenter of liver regeneration ALR|ERV1|HERV1|HPO|HPO1|HPO2|HSS no 23 621 207 0.17771 0.58417 0.1039 0.5846 1 1 1 1 1 1 NA NA NA GFER ENSMLUG00000030630.1 ENSMLUT00000026775.1 13 131 77.09923664 0.088040816 0.4963 1.0421 1.04211 -885.563028 -885.56325 0.999778025 NA NA NA GFER ENSG00000127554.12 ENST00000567719.1 17 131 95.41984733 0.175267705 0.176 0.35474 0.35544 -740.439687 -739.923914 0.597038905 NA NA NA NA NA NA NA NA 381 127 0.21278 0.3544 0.0676 0.3177 0.77182 1 0.89367 1 0.95882 1 NA NA NA 0.239784146570272 N 1 NA 0.239784146570272 N 0.959826250464684 NA 0.239784146570272 N 0.999999996208544 NA 0.239784146570272 N 0.0913994347808575 NA 0.239784146570272 N 0.1898 0 GFER_sequences_filtered_longestORFs_mafft_mincov_prank GFER_all 767 23 0.096157214611 0.149 N 0.4222 3 57, 578, 645 N 0.9999999440099161 0 na N 0.22207500172338218 0 na N 1.0 0 na Y 0.011504695759988848 0
+GGCX GGCX GGCX M list26_COV_list4dataset2nonOrf gamma-glutamyl carboxylase VKCFD1 no 24 2277 759 0.19063 0.35762 0.0521 0.2736 1 1 1 1 1 1 NA NA NA GGCX ENSMLUG00000005356.2 ENSMLUT00000005357.2 13 760 91.18421053 0.116117678 0.2871 0.9313 0.9313 -6053.873495 -6053.87352 0.999975 NA NA NA GGCX ENSG00000115486.11 ENST00000428479.3 14 74 91.89189189 0.260610293 0.1642 0.31857 0.31857 -406.805413 -406.805414 0.999999 NA NA NA GGCX 0.546284268 1 NA NA NA 1962 654 0.16691 0.24426 0.0325 0.1948 1 1 1 1 1 1 NA NA NA 0.19363486618769 N 1 NA 0.19363486618769 N 0.999997000004394 NA 0.19363486618769 N 0.99999171179185 NA 0.19363486618769 N 0.988572245156995 NA 0.19363486618769 N 1 3 41, 613, 741 GGCX_sequences_filtered_longestORFs_mafft_mincov_prank GGCX_all 902 22 0.141790335883 0.155 N 0.0608 9 121, 139, 480, 510, 575, 755, 803, 874, 888 N 0.9999991049293753 0 na N 0.7014332238556994 0 na N 1.0 0 na N 0.8693582353985212 0 na
+GGH GGH GGH orf8 list25_COV_list3dataset2orf gamma-glutamyl hydrolase GH no 23 957 319 0.35952 0.59257 0.1323 0.368 0.67163 1 0.71223 1 0.91407 1 NA NA NA GGH ENSMLUG00000007310.2 ENSMLUT00000007310.2 5 318 94.33962264 0.387323224 0.3468 1.06811 1.10986 -2443.726561 -2440.324553 0.033306324 -2443.440181 0.012551468 1 K255 GGH ENSG00000137563.11 ENST00000260118.6 16 319 95.61128527 0.240154466 0.1593 0.40196 0.41017 -1914.496732 -1913.879312 0.539334126 NA NA NA GGH 0.000916132 0.052384308 NA NA NA 780 260 0.35526 0.42582 0.0961 0.2706 0.64927 1 0.77867 1 0.90158 1 NA NA NA 0.406422462606554 N 0.856488832355829 NA 0.406422462606554 N 0.834135016031548 NA 0.406422462606554 N 0.925208344510803 NA 0.406422462606554 N 0.204404212414005 NA 0.406422462606554 N 1 0 GGH_sequences_filtered_longestORFs_mafft_mincov_prank GGH_all 653 24 0.537605700623 0.492 Y 0.0031 15 154, 156, 160, 168, 214, 218, 219, 362, 369, 376, 383, 385, 435, 450, 563 Y 0.001022489106548882 1 326 Y 1.1351511475411773e-05 3 320, 326, 563 Y 0.00010266903456292367 1 326 Y 5.9830200464470715e-05 6 320, 326, 365, 375, 444, 563
+GHITM GHITM GHITM orf9c list26_COV_list4dataset2nonOrf growth hormone inducible transmembrane protein DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 yes 24 1053 351 0.18728 0.54082 0.0787 0.4203 0.0021802 0.0239822 0.0046 0.0431951219512195 0.015535 0.13932625 0.476 7.71826 1 326_G_0.984 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GHITM 0.094322531 0.926538721 NA NA NA 918 306 0.20065 0.40374 0.0624 0.3108 0.00028814 0.00739559333333333 0.00031764 0.00940703076923077 0.0015619 0.03885371875 0.343 11.59591 1 283_G_0.985 0.195429520659926 Y 0.0155345764616646 1 326 0.195429520659926 Y 0.00431797818072499 1 326 0.195429520659926 Y 0.0169452602287995 1 326 0.195429520659926 Y 0.00200427109209705 1 326 0.195429520659926 N 0.7868 0 GHITM_sequences_filtered_longestORFs_mafft_mincov_prank GHITM_all 884 24 0.335711480208 0.323 N 0.1357 3 173, 603, 778 Y 0.0011744480359077473 1 778 Y 1.4247727737106612e-05 3 610, 616, 778 Y 2.2522404244010904e-05 3 610, 616, 778 Y 2.8751235606937854e-07 3 610, 616, 778
+GIGYF2 GIGYF2 GIGYF2 nsp2 list26_COV_list4dataset2nonOrf GRB10 interacting GYF protein 2 GYF2|PARK11|PERQ2|PERQ3|TNRC15 no 23 4005 1335 0.10122 0.32394 0.031 0.3065 0.014778 0.0964327118644068 0.030211 0.165459097222222 0.052903 0.357327280701754 1.654 3.20825 3 427_T_0.966,535_A_0.907,1260_P_0.912 GIGYF2 ENSMLUG00000017382.2 ENSMLUT00000017388.2 6 1304 94.47852761 0.106498458 0.3672 0.48706 0.49193 -7612.081579 -7609.775133 0.099614654 NA NA NA GIGYF2 ENSG00000204120.14 ENST00000456491.5 19 68 94.11764706 0.136955684 0.4564 1.17354 1.30632 -492.991734 -490.162606 0.059064335 NA NA NA GIGYF2 1 1 NA NA NA 3552 1184 0.10207 0.25472 0.0247 0.242 0.31045 1 0.42863 1 0.60436 1 NA NA NA 0.105911273752548 N 0.0529280412616707 NA 0.105911273752548 Y 0.0216875915491015 1 427 0.105911273752548 N 0.174083731311225 NA 0.105911273752548 Y 0.000503761274913621 3 427, 1260, 535 0.105911273752548 Y 0 4 168, 169, 174, 177 GIGYF2_sequences_filtered_longestORFs_mafft_mincov_prank GIGYF2_all 1732 24 0.088166548262 0.085 Y 0.0000 7 236, 299, 300, 305, 308, 616, 781 N 0.9427686958718544 0 na Y 0.03934986707940697 1 673 Y 0.01862966642107099 0 Y 0.023777869115414657 0
+GLA GLA GLA nsp14 list26_COV_list4dataset2nonOrf galactosidase alpha GALA no 23 1290 430 0.34628 0.41456 0.0914 0.2638 0.1031 0.385373786407767 0.2231 0.622416666666667 0.26738 1 NA NA NA GLA ENSMLUG00000004352.2 ENSMLUT00000004355.2 7 432 92.36111111 0.245535203 0.2592 0.65034 0.65384 -2848.543761 -2846.725247 0.1622667 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GLA 0.000645969 0.039577345 galactosidase alpha NA NA NA This gene encodes a homodimeric glycoprotein that hydrolyses the terminal alpha-galactosyl moieties from glycolipids and glycoproteins. This enzyme predominantly hydrolyzes ceramide trihexoside, and it can catalyze the hydrolysis of melibiose into galactose and glucose. A variety of mutations in this gene affect the synthesis, processing, and stability of this enzyme, which causes Fabry disease, a rare lysosomal storage disorder that results from a failure to catabolize alpha-D-galactosyl glycolipid moieties. 1122 374 0.39143 0.30398 0.0721 0.1841 1 1 1 1 0.71453 1 NA NA NA 0.351221783512474 N 0.281482781566416 NA 0.351221783512474 N 0.224821842845595 NA 0.351221783512474 N 0.364077117679655 NA 0.351221783512474 N 0.228754687850123 NA 0.351221783512474 Y 0.0019 3 59, 60, 425 GLA_sequences_filtered_longestORFs_mafft_mincov_prank GLA_all 530 23 0.444934110253 0.423 Y 0.0000 11 52, 90, 165, 190, 211, 212, 310, 329, 382, 454, 526 N 0.08453147942725119 0 na Y 0.005149948312421734 1 57 Y 0.036044535783949824 0 Y 0.02239315381713757 2 57, 522
+GNB1 GNB1 GNB1 nsp7 list24_COV_list2nonOrf G protein subunit beta 1 MRD42 no 23 1023 341 0.00386 0.28741 0.0014 0.3533 1 1 1 1 0.99906 1 NA NA NA GNB1 ENSMLUG00000004007.2 ENSMLUT00000004007.2 7 341 89.44281525 0.019662276 1.9099 14.43006 50.40283 -2216.034824 -2213.051297 0.050614003 NA NA NA GNB1 ENSG00000078369.17 ENST00000615252.4 19 241 99.17012448 0.035713833 1.7366 20.03193 20.13779 -2588.528 -2588.529064 0.998936566 NA NA NA GNB1 0.993518026 1 NA NA NA 717 239 1e-04 0.08605 0 0.1138 0.99578 1 1 1 0.99949 1 NA NA NA 0.00387496203137966 N 0.999057444484766 NA 0.00387496203137966 N 0.999044456822327 NA 0.00387496203137966 N 0.99999999984675 NA 0.00387496203137966 N 0.999999626710248 NA 0.00387496203137966 N 1 0 GNB1_sequences_filtered_longestORFs_duplication_remainingsequences_prank GNB1_rem 372 24 0.012137123323 0.011 Y 0.0022 1 32 N 0.999999758795213 0 na N 0.6414748978562623 0 na N 0.9704455335487553 0 na N 0.6350827332461038 0 na
+GNG5 GNG5 GNG5 nsp7 list26_COV_list4dataset2nonOrf G protein subunit gamma 5 - no 24 207 69 0.33712 0.49735 0.1 0.2966 0.68217 1 0.8982 1 0.91911 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GNG5 ENSG00000174021.10 ENST00000370641.3 19 69 81.15942029 0.540859677 0.1553 0.85314 0.89071 -462.876283 -457.698307 0.005639409 -462.703522 0.001556562 2 R25, R18 NA NA NA NA NA 171 57 0.40192 0.27133 0.0592 0.1472 0.10788 0.561267567567568 0.26941 1 0.27406 1 NA NA NA 0.314281312096066 N 0.919120540844398 NA 0.314281312096066 N 0.886659720435933 NA 0.314281312096066 N 0.924545694421471 NA 0.314281312096066 N 0.949159036285119 NA 0.314281312096066 N 1 0 GNG5_sequences_filtered_longestORFs_mafft_mincov_prank GNG5_all 601 24 0.481274164068 0.532 Y 0.0002 2 415, 435 N 0.9999998548751242 0 na N 0.9999904134392855 0 na N 1.0 0 na N 1.0 0 na
+GNG5 GNG5 GNG5 nsp7 list26_COV_list4dataset2nonOrf G protein subunit gamma 5 - no 24 207 69 0.33712 0.49735 0.1 0.2966 0.68217 1 0.8982 1 0.91911 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GNG5 ENSG00000174021.10 ENST00000370641.3 19 69 81.15942029 0.540859677 0.1553 0.85314 0.89071 -462.876283 -457.698307 0.005639409 -462.703522 0.001556562 2 R25, R18 NA NA NA NA NA 171 57 0.40192 0.27133 0.0592 0.1472 0.10788 0.561267567567568 0.26941 1 0.27406 1 NA NA NA 0.314281312096066 N 0.919120540844398 NA 0.314281312096066 N 0.886659720435933 NA 0.314281312096066 N 0.924545694421471 NA 0.314281312096066 N 0.949159036285119 NA 0.314281312096066 N 1 0 GNG5_sequences_filtered_longestORFs_D189gp2_prank GNG5_189-2 96 10 1.076352311929 1.336 N 0.9298 0 na N 0.9999999999998295 0 na N 0.9893947262238464 0 na N 0.8589882807411348 0 na N 0.8589882807411348 0 na
+GOLGA2 GOLGA2 GOLGA2 nsp13 list26_COV_list4dataset2nonOrf golgin A2 GM130 no 24 3036 1012 0.18171 0.53387 0.079 0.435 0.011706 0.081942 0.041694 0.205252530864198 0.042572 0.307836018518519 0.12 11.31463 4 719_D_0.975,921_D_0.901,924_A_0.995,927_A_0.908 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GOLGA2 1 1 NA NA NA 2382 794 0.19743 0.31479 0.0481 0.2435 0.34568 1 0.61267 1 0.63953 1 NA NA NA 0.212349864694011 Y 0.0425697658291465 0 0.212349864694011 Y 0.0303435592443135 2 719, 924 0.212349864694011 N 0.131127516987269 NA 0.212349864694011 Y 0.000820237999741521 2 924, 719 0.212349864694011 Y 0 43 54, 59, 60, 62, 63, 76, 77, 89, 106, 233, 306, 356, 367, 379, 389, 430, 433, 442, 471, 480, 579, 608, 680, 705, 730, 775, 776, 796, 799, 812, 863, 918, 921, 922, 924, 926, 927, 932, 940, 948, 949, 961, 964 GOLGA2_sequences_filtered_longestORFs_mafft_mincov_prank GOLGA2_all 1684 24 0.305393987169 0.257 N 0.1462 19 23, 168, 253, 724, 790, 849, 858, 935, 1142, 1144, 1153, 1166, 1431, 1569, 1577, 1579, 1580, 1581, 1583 N 0.9999991368589777 0 na Y 0.025893707763014754 1 1579 N 1.0 0 na Y 3.682200582975814e-06 0
+GOLGA3 GOLGA3 GOLGA3 nsp13 list26_COV_list4dataset2nonOrf golgin A3 GCP170|MEA-2 no 24 4542 1514 0.13848 0.7478 0.0997 0.7199 1 1 1 1 1 1 NA NA NA GOLGA3 ENSMLUG00000001618.2 ENSMLUT00000001625.2 11 1392 95.47413793 0.179682799 0.535 1.57737 1.58271 -13303.62565 -13303.236 0.677291177 NA NA NA GOLGA3 ENSG00000090615.14 ENST00000450791.6 11 1499 96.93128753 0.130669865 0.2672 0.47551 0.50725 -8871.254649 -8855.888968 2.12e-07 -8869.318424 2.19e-07 2 K42, V43 GOLGA3 0.093020573 0.918542878 NA NA NA 3216 1072 0.15255 0.3635 0.0521 0.3413 0.73337 1 0.71943 1 0.94555 1 NA NA NA 0.172060283701264 na NA NA 0.172060283701264 na NA NA 0.172060283701264 N 0.999999432862912 NA 0.172060283701264 N 0.999486458284136 NA 0.172060283701264 na NA 0 GOLGA3_sequences_filtered_longestORFs_mafft_mincov_prank GOLGA3_all 1900 22 0.163723593406 0.147 Y 0.0000 16 48, 218, 235, 393, 504, 817, 820, 847, 849, 855, 861, 930, 1154, 1169, 1437, 1824 N 0.9999997475752344 0 na N 0.24136126411156225 0 na N 0.9990004998331715 0 na na na 0 na
+GOLGA7 GOLGA7 GOLGA7 S list26_COV_list4dataset2nonOrf golgin A7 GCP16|GOLGA3AP1|GOLGA7A|HSPC041 no 24 414 138 1e-04 0.26083 0 0.306 1 1 1 1 0.99936 1 NA NA NA GOLGA7 ENSMLUG00000014516.2 ENSMLUT00000014518.2 10 138 86.95652174 0.088463359 3.6554 3.39644 3.39646 -1178.46202 -1178.462175 0.999845012 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 345 115 1e-04 0.15139 0 0.1592 0.99593 1 1 1 0.9997 1 NA NA NA 0.001 N 0.999363202841444 NA 0.001 N 0.999362203478744 NA 0.001 N 0.999999999999204 NA 0.001 N 0.99999815750197 NA 0.001 N 1 0 GOLGA7_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank GOLGA7_all_part1 183 24 0.156756002379 0.147 Y 0.0000 3 108, 110, 126 Y 0.00022950324671518768 1 126 Y 1.926716958405556e-07 1 126 Y 1.1467426728354779e-05 1 126 Y 1.4006346635015994e-05 2 105, 126
+GOLGB1 GOLGB1 GOLGB1 nsp13 list26_COV_list4dataset2nonOrf golgin B1 GCP|GCP372|GOLIM1 yes 24 9864 3288 0.43109 0.4171 0.1004 0.233 0.00010068 0.00207717631578947 0.00034794 0.00582421304347826 0.00054429 0.0110430157894737 4.229 3.42197 8 1135_A_0.961,1236_R_0.978,1268_R_0.945,1558_I_0.955,1851_V_0.923,2171_C_0.920,2893_V_0.923,3110_L_0.912 GOLGB1 ENSMLUG00000024533.1 ENSMLUT00000026933.1 5 3261 96.933456 0.221399945 0.2943 0.62767 0.63352 -21442.66525 -21438.93963 0.024098107 -21442.48654 0.007734994 1 S630 NA NA NA NA NA NA NA NA NA NA NA NA NA GOLGB1 0.511064965 1 NA NA NA 9084 3028 0.42266 0.34099 0.0816 0.1932 0.17169 0.796393373493976 0.28226 1 0.36153 1 NA NA NA 0.403388955932959 Y 0.000544289110040438 0 0.403388955932959 Y 0.000185569329835348 3 1135, 1236, 1558 0.403388955932959 N 0.073903992542689 NA 0.403388955932959 Y 0.0222135900514984 0 0.403388955932959 N 0.9068 14 154, 301, 415, 579, 986, 1044, 1494, 1760, 1763, 2407, 2435, 2651, 2817, 2925 GOLGB1_sequences_filtered_longestORFs_mafft_mincov_prank GOLGB1_all 3732 24 0.378204440309 0.407 N 0.0796 43 83, 140, 142, 154, 159, 185, 590, 608, 643, 743, 763, 987, 1050, 1063, 1226, 1271, 1279, 1326, 1337, 1411, 1471, 1529, 1561, 1578, 1582, 1613, 1616, 1728, 1784, 1785, 1787, 1851, 1852, 1971, 2194, 2700, 2728, 2881, 2963, 3101, 3314, 3593, 3694 Y 0.04586809391212947 0 Y 0.0001008144633452632 0 Y 2.6360084887481196e-09 2 2464, 3105 na na 0 na
+GORASP1 GORASP1 GORASP1 nsp13 list26_COV_list4dataset2nonOrf golgi reassembly stacking protein 1 GOLPH5|GRASP65|P65 yes 24 1368 456 0.35746 0.53431 0.1154 0.3228 0.0022912 0.0245031111111111 0.0081688 0.0683693043478261 0.0092707 0.1019777 0.546 10.57822 1 433_A_0.992 GORASP1 ENSMLUG00000005614.2 ENSMLUT00000005615.2 3 431 90.9512761 0.323245913 0.1242 0.21174 0.37361 -1964.392034 -1961.6331 0.063359273 NA NA NA GORASP1 ENSG00000114745.13 ENST00000441081.1 16 88 100 0.012315818 0.2482 0.35432 0.35435 -461.526226 -461.526882 0.999344215 NA NA NA GORASP1 1 1 NA NA NA 1074 358 0.46396 0.39956 0.0986 0.2124 0.00062917 0.01212255 0.0028925 0.05061875 0.0028065 0.0568685526315789 0.449 16.05395 2 186_H_0.921,338_A_0.998 0.397130480093248 Y 0.00926866428372195 1 433 0.397130480093248 Y 0.00793331736333473 1 433 0.397130480093248 Y 0.0442805739497724 1 433 0.397130480093248 Y 0.0263937624730188 1 433 0.397130480093248 N 0.9904 5 227, 230, 260, 433, 449 GORASP1_sequences_filtered_longestORFs_mafft_mincov_prank GORASP1_all 1939 24 0.387956217637 0.379 N 0.1831 15 816, 831, 1292, 1417, 1451, 1487, 1526, 1527, 1639, 1695, 1735, 1740, 1749, 1754, 1756 N 0.10802784002302251 0 na Y 0.04870295760413275 1 1740 Y 0.012919725848616241 0 Y 0.006984932149948331 2 1740, 1756
+GPAA1 GPAA1 GPAA1 orf9c list26_COV_list4dataset2nonOrf glycosylphosphatidylinositol anchor attachment 1 GAA1|GPIBD15|hGAA1 no 23 1866 622 0.07715 0.59115 0.048 0.6227 0.81654 1 0.29339 0.728742903225806 0.97893 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GPAA1 0.943023482 1 NA NA NA 1269 423 0.09819 0.34051 0.0325 0.3305 0.014814 0.14258475 0.051345 0.439285 0.11556 0.946608510638298 0.999 4.72883 1 256_A_0.961 0.0888009683379566 N 0.978924264015121 NA 0.0888009683379566 N 0.259590990518217 NA 0.0888009683379566 N 0.97958721640933 NA 0.0888009683379566 N 0.0672011504625157 NA 0.0888009683379566 N 1 2 223, 403 GPAA1_sequences_filtered_longestORFs_mafft_mincov_prank GPAA1_all 1454 24 0.090726390872 0.091 N 0.9826 5 85, 376, 442, 613, 1139 N 0.9999997631266805 0 na N 0.3059381800239461 0 na N 1.0 0 na N 0.16999266328690485 0 na
+GPX1 GPX1 GPX1 nsp5_C145A list24_COV_list2nonOrf glutathione peroxidase 1 GPXD|GSHPX1 no 27 615 205 0.10057 0.68151 0.0776 0.7714 1 1 0.92503 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 348 116 0.09159 0.47798 0.0475 0.5191 1 1 1 1 1 1 NA NA NA 0.155788299461074 N 1 NA 0.155788299461074 N 0.919637231764956 NA 0.155788299461074 N 0.999999824402054 NA 0.155788299461074 N 0.942404609511332 NA 0.155788299461074 N 1 0 GPX1_sequences_filtered_longestORFs_mafft_mincov_prank GPX1_all 982 27 0.220387050417 0.220 Y 0.0000 12 351, 366, 410, 415, 434, 577, 650, 667, 730, 733, 750, 774 N 0.9999996748506947 0 na N 0.9999866177422099 0 na N 1.0 0 na N 0.2639488353791985 0 na
+GRIPAP1 GRIPAP1 GRIPAP1 nsp13 list26_COV_list4dataset2nonOrf GRIP1 associated protein 1 GRASP-1 no 23 2526 842 0.1096 0.26692 0.0276 0.2519 0.31279 0.747976086956522 0.60659 1 0.6663 1 NA NA NA GRIPAP1 ENSMLUG00000009232.2 ENSMLUT00000009258.2 12 842 93.46793349 0.107890943 0.3829 1.18978 1.19909 -7203.55603 -7202.940685 0.540454406 NA NA NA GRIPAP1 ENSG00000068400.13 ENST00000611705.4 19 23 100 NA 0.0779 0.04538 0.04538 -87.183363 -87.183391 0.999972 NA NA NA GRIPAP1 0.128417261 1 NA NA NA 2139 713 0.09263 0.19315 0.017 0.1832 0.37347 1 0.6956 1 0.72285 1 NA NA NA 0.144380154733321 N 0.666233546161591 NA 0.144380154733321 N 0.555457600249052 NA 0.144380154733321 N 0.513547803148031 NA 0.144380154733321 N 0.068340177647977 NA 0.144380154733321 N 1 1 689 GRIPAP1_sequences_filtered_longestORFs_mafft_mincov_prank GRIPAP1_all 1711 22 0.137449468005 0.104 N 0.9914 5 366, 467, 473, 949, 1597 N 0.9971162888884593 0 na Y 0.0010441129923277768 17 101, 206, 218, 226, 259, 260, 263, 273, 278, 452, 461, 539, 709, 714, 720, 735, 925 N 0.12135926503896373 0 na N 0.054530232846024596 0 na
+GRPEL1 GRPEL1 GRPEL1 nsp10 list24_COV_list2nonOrf GrpE like 1, mitochondrial GrpE|HMGE|mt-GrpE#1 no 22 654 218 0.08526 0.5483 0.0504 0.5915 1 1 1 1 1 1 NA NA NA GRPEL1 ENSMLUG00000008977.2 ENSMLUT00000008979.2 9 220 80 0.14925679 0.525 1.41536 1.54259 -1577.493821 -1574.733486 0.063270569 NA NA NA GRPEL1 ENSG00000109519.12 ENST00000264954.4 18 218 94.03669725 0.080541871 0.254 0.53586 0.53586 -1427.756159 -1427.756167 0.999992 NA NA NA GRPEL1 0.627530857 1 NA NA NA 489 163 0.07023 0.3454 0.0281 0.3999 0.36343 1 0.5754 1 0.6579 1 NA NA NA 0.0889046013938552 N 1 NA 0.0889046013938552 N 0.999979000220438 NA 0.0889046013938552 N 0.999999059575417 NA 0.0889046013938552 N 0.106371278582468 NA 0.0889046013938552 N 1 0 GRPEL1_sequences_filtered_longestORFs_mafft_mincov_prank GRPEL1_all 240 24 0.086719113802 0.087 N 1.0000 1 91 N 0.9999995135173141 0 na N 0.2577892912415277 0 na N 1.0 0 na N 1.0 0 na
+GTF2F2 GTF2F2 GTF2F2 nsp9 list24_COV_list2nonOrf general transcription factor IIF subunit 2 BTF4|RAP30|TF2F2|TFIIF no 24 750 250 0.02445 0.33417 0.0094 0.3845 1 1 1 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GTF2F2 1 1 NA NA NA 636 212 0.03639 0.2466 0.0108 0.2963 1 1 1 1 1 1 NA NA NA 0.0288400306854407 N 0.99956509459863 NA 0.0288400306854407 N 0.999564095034152 NA 0.0288400306854407 N 0.999999999809006 NA 0.0288400306854407 N 0.999887097292709 NA 0.0288400306854407 N 1 0 GTF2F2_sequences_filtered_longestORFs_mafft_mincov_prank GTF2F2_all 520 24 0.063909796339 0.061 N 1.0000 0 na N 0.9999999905733148 0 na N 0.9999741529398143 0 na N 1.0 0 na N 0.9980019986673803 0 na
+HDAC2 HDAC2 HDAC2 nsp5 list26_COV_list4dataset2nonOrf histone deacetylase 2 HD2|RPD3|YAF1 no 24 1470 490 0.01067 0.25079 0.0039 0.3623 1 1 0.34431 0.804883333333333 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HDAC2 ENSG00000196591.11 ENST00000524334.1 6 52 100 0.043758984 0.1375 5.36638 5.36721 -304.260393 -304.260649 0.999744033 NA NA NA HDAC2 1 1 NA NA NA 1281 427 0.01705 0.17663 0.0044 0.259 0.9174 1 0.37419 1 0.99455 1 NA NA NA 0.0129479241041752 na NA NA 0.0129479241041752 na NA NA 0.0129479241041752 N 0.999552086960017 NA 0.0129479241041752 Y 4.22163723254104e-87 1 460 0.0129479241041752 Y 1e-04 0 HDAC2_sequences_filtered_longestORFs_D584gp1_prank HDAC2_584-1 792 22 0.072625220245 0.069 Y 0.0212 3 195, 529, 679 N 0.9999999633500927 0 na N 0.9997173382334857 0 na Y 0.02100489023574836 0 Y 0.005976022895006596 0
+HEATR3 HEATR3 HEATR3 orf7a list25_COV_list3dataset2orf HEAT repeat containing 3 SYO1 no 24 2055 685 0.19063 0.47473 0.0711 0.3728 1 1 1 1 0.99916 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HEATR3 ENSG00000155393.12 ENST00000299192.7 14 681 98.97209985 0.129618084 0.1751 0.33356 0.33357 -4068.040378 -4068.040482 0.999896005 NA NA NA HEATR3 0.495183326 1 NA NA NA 1665 555 0.23887 0.3332 0.0585 0.2448 1 1 1 1 0.86287 1 NA NA NA 0.18528365890995 N 0.99916135186182 NA 0.18528365890995 N 0.90429829560905 NA 0.18528365890995 N 0.9999989079121 NA 0.18528365890995 N 0.993567681382095 NA 0.18528365890995 N 1 2 345, 446 HEATR3_sequences_filtered_longestORFs_mafft_mincov_prank HEATR3_all 1645 22 0.180463336537 0.180 N 0.5376 3 531, 582, 626 N 0.9999979553042962 0 na N 0.9996892022780154 0 na N 1.0 0 na N 0.9960079893431798 0 na
+HECTD1 HECTD1 HECTD1 nsp8 list24_COV_list2nonOrf HECT domain E3 ubiquitin protein ligase 1 EULIR no 22 7833 2611 0.01563 0.18765 0.0036 0.2333 1 1 1 1 0.99988 1 NA NA NA HECTD1 ENSMLUG00000013003.2 ENSMLUT00000013007.2 9 2611 97.05093834 0.01987373 0.187 0.37051 0.3705 -14548.28543 -14548.279 0.993590628 NA NA NA HECTD1 ENSG00000092148.12 ENST00000611816.4 12 2615 99.88527725 0.062418501 0.0473 0.09215 0.09008 -12010.3272 -11985.79417 2.22e-11 -12002.43351 7.99e-09 1 G945 HECTD1 0.907809819 1 NA NA NA 7056 2352 0.02104 0.13241 0.0035 0.1645 1 1 0.99819 1 1 1 NA NA NA 0.0175677198843292 N 1 NA 0.0175677198843292 N 0.99987900731926 NA 0.0175677198843292 N 0.999997030042186 NA 0.0175677198843292 N 0.501561792820576 NA 0.0175677198843292 N 1 0 HECTD1_sequences_filtered_longestORFs_mafft_mincov_prank HECTD1_all 2939 24 0.021094262608 0.019 Y 0.0001 4 684, 1404, 1879, 2028 Y 0.008901674998077978 1 1879 Y 3.7920189419444137e-11 2 1879, 2188 Y 0.01608287882263056 0 Y 3.2223008399506914e-07 1 1879
+HMOX1 HMOX1 HMOX1 orf3a list23_COV_list1orf heme oxygenase 1 HMOX1D|HO-1|HSP32|bK286B10 no 24 867 289 0.17957 0.66242 0.1133 0.6311 1 1 0.84428 1 1 1 NA NA NA HMOX1 ENSMLUG00000008815.2 ENSMLUT00000008807.2 12 285 81.75438596 0.23859892 0.3776 1.60867 1.66099 -2454.648823 -2452.499544 0.116568173 NA NA NA HMOX1 ENSG00000100292.16 ENST00000216117.8 18 289 91.69550173 0.26105194 0.1867 0.70724 0.71221 -2045.708694 -2045.643886 0.937247398 NA NA NA NA NA NA NA NA 630 210 0.22543 0.28407 0.0546 0.2423 0.57248 1 0.84928 1 0.85275 1 NA NA NA 0.227261386290832 N 1 NA 0.227261386290832 N 0.832265315643782 NA 0.227261386290832 N 0.964150030931573 NA 0.227261386290832 N 0.484702893738418 NA 0.227261386290832 N 1 0 HMOX1_sequences_filtered_longestORFs_mafft_mincov_prank HMOX1_all 496 24 0.251296084380 0.171 Y 0.0011 9 41, 111, 113, 208, 215, 314, 327, 399, 402 N 0.9999996541487833 0 na N 0.9999864280441805 0 na N 1.0 0 na N 1.0 0 na
+HOOK1 HOOK1 HOOK1 nsp13 list26_COV_list4dataset2nonOrf hook microtubule tethering protein 1 HK1 no 24 2193 731 0.10862 0.31513 0.0322 0.2964 1 1 1 1 1 1 NA NA NA HOOK1 ENSMLUG00000015536.2 ENSMLUT00000015546.2 11 730 93.69863014 0.063317564 0.2519 0.58065 0.58158 -4668.362609 -4667.393128 0.379279833 NA NA NA HOOK1 ENSG00000134709.10 ENST00000371208.3 17 729 95.61042524 0.088870594 0.1255 0.25743 0.25743 -3874.124599 -3874.124612 0.999987 NA NA NA HOOK1 0.502954854 1 NA NA NA 1944 648 0.15747 0.22947 0.0303 0.1925 0.86968 1 1 1 1 1 NA NA NA 0.0966808343605157 N 1 NA 0.0966808343605157 N 0.999957000924482 NA 0.0966808343605157 N 0.999998304956152 NA 0.0966808343605157 N 0.999999998527528 NA 0.0966808343605157 N 1 0 HOOK1_sequences_filtered_longestORFs_mafft_mincov_prank HOOK1_all 901 24 0.099574669625 0.100 N 0.6019 1 391 N 0.9999996985362031 0 na N 0.12807058131492954 0 na N 0.9990004998331715 0 na N 1.0 0 na
+HS2ST1 HS2ST1 HS2ST1 nsp7 list26_COV_list4dataset2nonOrf heparan sulfate 2-O-sulfotransferase 1 dJ604K5.2 no 24 1071 357 0.06867 0.18426 0.013 0.1888 1 1 1 1 1 1 NA NA NA HS2ST1 ENSMLUG00000030087.1 ENSMLUT00000023452.1 11 316 99.05063291 0.016449146 0.5151 0.7068 0.70682 -2111.210982 -2111.212841 0.998142727 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HS2ST1 0.998871621 1 NA NA NA 927 309 0.06724 0.1107 0.0076 0.1127 1 1 1 1 0.99994 1 NA NA NA 0.0735694237972337 N 1 NA 0.0735694237972337 N 0.994794595318996 NA 0.0735694237972337 N 0.999999390180123 NA 0.0735694237972337 N 0.896339503957552 NA 0.0735694237972337 N 1 0 HS2ST1_sequences_filtered_longestORFs_mafft_mincov_prank HS2ST1_all 467 24 0.049526435418 0.047 N 0.8304 0 na N 0.7669728060811652 0 na N 0.21629317355740055 0 na N 0.7945336025033196 0 na N 0.32791527889951105 0 na
+HS6ST2 HS6ST2 HS6ST2 orf8 list25_COV_list3dataset2orf heparan sulfate 6-O-sulfotransferase 2 - no 23 1968 656 0.2307 0.37771 0.0714 0.3093 0.19239 0.561057894736842 0.18112 0.540551937984496 0.43537 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HS6ST2 ENSG00000171004.18 ENST00000640529.1 16 277 97.47292419 0.116525036 0.1978 0.3608 0.36564 -1627.124599 -1626.17383 0.386443734 NA NA NA NA NA NA NA NA 1383 461 0.19763 0.22521 0.0384 0.1943 1 1 1 1 1 1 NA NA NA 0.297249072002378 N 0.435343023009356 NA 0.297249072002378 N 0.177444215204685 NA 0.297249072002378 N 0.533861423138309 NA 0.297249072002378 N 0.338677107809944 NA 0.297249072002378 N 1 2 581, 625 HS6ST2_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank HS6ST2_all_part1 813 24 0.270519011833 0.221 N 1.0000 7 139, 141, 418, 656, 708, 711, 724 Y 0.02429023356039424 1 418 Y 0.0051018881067389854 1 418 N 0.05393368730035209 0 na Y 0.010041788933126234 1 418
+HSBP1 HSBP1 HSBP1 nsp13 list26_COV_list4dataset2nonOrf heat shock factor binding protein 1 NPC-A-13 no 24 231 77 0.01253 0.3452 0.0058 0.4602 1 1 1 1 1 1 NA NA NA HSBP1 ENSMLUG00000007636.2 ENSMLUT00000007621.2 9 76 84.21052632 0.469211898 0.4944 2.74941 2.74944 -833.964215 -833.964329 0.999886006 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 189 63 1e-04 0.26772 0 0.3778 0.99549 1 1 1 0.99966 1 NA NA NA 0.0113757434044035 N 0.999926002737892 NA 0.0113757434044035 N 0.999926002737949 NA 0.0113757434044035 N 0.94917945157103 NA 0.0113757434044035 N 0.745747350322599 NA 0.0113757434044035 N 0.4202 0 HSBP1_sequences_filtered_longestORFs_mafft_mincov_prank HSBP1_all 795 24 0.362897817634 0.408 N 0.0610 2 592, 661 N 0.78798694179292 0 na N 0.0894389251807912 0 na N 0.195929574126888 0 na Y 0.019139519457233287 0
+HYOU1 HYOU1 HYOU1 orf8 list23_COV_list1orf hypoxia up-regulated 1 GRP-170|Grp170|HSP12A|ORP-150|ORP150 no 22 3006 1002 0.1235 0.40065 0.0432 0.3499 0.26918 0.68064477124183 0.25408 0.669561824324324 0.5498 1 NA NA NA HYOU1 ENSMLUG00000004772.2 ENSMLUT00000004783.2 3 998 99.3987976 0.110361074 0.0477 0.05613 0.05613 -4245.112732 -4245.112758 0.999974 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HYOU1 1 1 NA NA NA 2415 805 0.16411 0.24702 0.0334 0.2035 0.99126 1 1 1 1 1 NA NA NA 0.137144261298894 N 0.549800386647833 NA 0.137144261298894 N 0.240668454527446 NA 0.137144261298894 N 0.569774185309425 NA 0.137144261298894 N 0.126242325306896 NA 0.137144261298894 N 0.9971 1 678 HYOU1_sequences_filtered_longestORFs_mafft_mincov_prank HYOU1_all 1337 24 0.158524063377 0.136 Y 0.0014 15 139, 165, 201, 393, 553, 554, 563, 665, 798, 801, 803, 833, 850, 863, 1277 N 0.9999990131896406 0 na N 0.859796205836504 0 na N 1.0 0 na N 0.9990004998331715 0 na
+IDE IDE IDE nsp4 list24_COV_list2nonOrf insulin degrading enzyme INSULYSIN no 24 3060 1020 0.11029 0.28343 0.0298 0.2705 0.59121 1 0.62883 1 0.86566 1 NA NA NA IDE ENSMLUG00000009510.2 ENSMLUT00000009538.2 11 990 99.6969697 0.040802575 0.228 0.48692 0.48692 -6281.329159 -6281.329227 0.999932002 NA NA NA IDE ENSG00000119912.15 ENST00000371581.9 19 465 98.70967742 0.062270064 0.1261 0.29865 0.29466 -2629.337266 -2626.242243 0.045273971 -2629.027972 0.018255554 NA IDE 1 1 NA NA NA 2760 920 0.12071 0.21574 0.0245 0.2033 0.16439 0.771831097560976 0.29376 1 0.38037 1 NA NA NA 0.110962780804066 N 0.865668706168576 NA 0.110962780804066 N 0.747436445555861 NA 0.110962780804066 N 0.914770216920932 NA 0.110962780804066 Y 5.63069514886977e-05 52 256, 2, 9, 266, 11, 12, 908, 14, 15, 909, 910, 18, 786, 20, 21, 534, 787, 788, 917, 26, 27, 28, 282, 922, 543, 32, 34, 35, 36, 37, 546, 39, 803, 804, 805, 806, 45, 48, 176, 78, 974, 81, 469, 856, 857, 858, 480, 869, 102, 911, 491, 247 0.110962780804066 Y 0 5 787, 805, 804, 909, 910 IDE_sequences_filtered_longestORFs_mafft_mincov_prank IDE_all 1445 24 0.090773344200 0.089 Y 0.0000 10 139, 151, 705, 792, 794, 807, 808, 872, 876, 878 Y 5.232216490035662e-41 3 872, 876, 878 Y 2.4701413764351294e-66 3 872, 876, 878 Y 5.975956040153828e-44 3 872, 876, 878 na na 0 na
+IL17RA IL17RA IL17RA orf8 list25_COV_list3dataset2orf interleukin 17 receptor A CANDF5|CD217|CDw217|IL-17RA|IL17R|IMD51|hIL-17R no 24 2604 868 0.17786 0.9775 0.1649 0.9269 1 1 0.071071 0.286905208333333 1 1 7.642 1 0 noneOver_0.9 IL17RA ENSMLUG00000003654.2 ENSMLUT00000003658.2 8 810 89.01234568 0.28793215 0.4154 1.05462 1.09076 -5965.067892 -5961.704246 0.034608845 -5963.535414 0.055655549 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1575 525 0.16855 0.55537 0.0919 0.5452 0.20625 0.90234375 0.070016 0.544313 0.44919 1 1.58 2.25443 0 noneOver_0.9 0.267991845166578 N 0.984922816266339 NA 0.267991845166578 N 0.106361352121451 NA 0.267991845166578 N 0.98295244604321 NA 0.267991845166578 N 0.228707736469452 NA 0.267991845166578 Y 0 6 12, 52, 270, 299, 498, 596 IL17RA_sequences_filtered_longestORFs_mafft_mincov_prank IL17RA_all 1557 23 0.228451784188 0.195 N 0.1417 143 423, 427, 433, 435, 445, 446, 451, 460, 468, 533, 545, 546, 548, 554, 561, 562, 573, 588, 594, 595, 597, 621, 647, 651, 654, 655, 664, 665, 666, 671, 673, 678, 682, 687, 689, 698, 699, 702, 708, 714, 716, 718, 727, 728, 731, 735, 738, 742, 745, 933, 938, 949, 955, 956, 979, 981, 994, 1000, 1021, 1022, 1027, 1028, 1029, 1030, 1031, 1032, 1035, 1040, 1054, 1061, 1066, 1076, 1078, 1131, 1089, 1092, 1105, 1116, 1119, 1129, 1132, 1136, 1138, 1145, 1148, 1170, 1177, 1179, 1187, 1215, 1218, 1229, 1243, 1244, 1247, 1248, 1251, 1255, 1272, 1276, 1282, 1292, 1293, 1295, 1302, 1317, 1322, 1332, 1334, 1339, 1359, 1370, 1373, 1374, 1377, 1379, 1382, 1384, 1392, 1402, 1403, 1405, 1411, 1414, 1416, 1424, 1432, 1439, 1462, 1465, 1471, 1491, 1494, 1508, 1527, 1531, 1535, 1536, 1538, 1541, 1542, 1548, 1553 N 0.9999996922743339 0 na N 0.3768769266449034 0 na N 1.0 0 na N 0.11706803704428821 0 na
+IMPDH2 IMPDH2 IMPDH2 nsp14 list24_COV_list2nonOrf inosine monophosphate dehydrogenase 2 IMPD2|IMPDH-II no 24 1545 515 0.02179 0.27103 0.0065 0.2968 1 1 1 1 0.99936 1 NA NA NA IMPDH2 ENSMLUG00000013965.2 ENSMLUT00000013972.2 14 515 86.21359223 0.012416405 0.4874 50.93829 50.93616 -4963.051792 -4959.072943 0.018707159 -4958.897176 0.553246052 NA IMPDH2 ENSG00000178035.11 ENST00000442157.1 15 279 99.28315412 0.345543694 1.5521 3.80863 3.96597 -3207.035275 -3203.3997 0.026368768 -3203.996416 0.274638373 NA IMPDH2 0.993717516 1 NA NA NA 1293 431 0.03891 0.1682 0.0067 0.1732 1 1 1 1 0.99982 1 NA NA NA 0.0236679269689934 N 0.999360204756568 NA 0.0236679269689934 N 0.999363202841785 NA 0.0236679269689934 N 0.999999999536612 NA 0.0236679269689934 N 0.999874029085847 NA 0.0236679269689934 Y 0.017 0 IMPDH2_sequences_filtered_longestORFs_D906gp1_prank IMPDH2_906-1 1560 24 0.035412844051 0.053 N 1.0000 1 1228 N 0.9999875873015338 0 na N 0.9999968708128864 0 na N 0.9559974818330303 0 na Y 0.01757988373902485 1 165
+INHBE INHBE INHBE orf8 list23_COV_list1orf inhibin subunit beta E - no 24 1056 352 0.38677 0.55937 0.1249 0.323 0.49865 1 0.68668 1 0.79581 1 NA NA NA INHBE ENSMLUG00000001009.2 ENSMLUT00000001003.2 15 354 87.85310734 0.341318744 0.3176 1.66327 1.71573 -3702.997967 -3692.734981 3.49e-05 -3701.695406 2.3e-05 3 V88, S89, G206 INHBE ENSG00000139269.2 ENST00000266646.2 19 351 98.29059829 0.291782947 0.1604 0.49118 0.49247 -2420.61857 -2420.509659 0.89681023 NA NA NA NA NA NA NA NA 846 282 0.34811 0.36159 0.0781 0.2244 0.43355 1 0.65462 1 0.73741 1 NA NA NA 0.445803167571891 N 0.795775633764614 NA 0.445803167571891 N 0.686714258344531 NA 0.445803167571891 N 0.999993063732245 NA 0.445803167571891 N 0.993718373564602 NA 0.445803167571891 N 1 2 5, 180 INHBE_sequences_filtered_longestORFs_mafft_mincov_prank INHBE_all 416 24 0.342439624293 0.322 N 1.0000 5 64, 178, 214, 245, 268 N 0.9999995054391861 0 na N 0.8585915620276827 0 na N 1.0 0 na N 0.376438722738118 0 na
+INTS4 INTS4 INTS4 M list26_COV_list4dataset2nonOrf integrator complex subunit 4 INT4|MST093 no 24 2895 965 0.06348 0.30522 0.0184 0.2891 1 1 1 1 1 1 NA NA NA INTS4 ENSMLUG00000005683.2 ENSMLUT00000005694.2 7 965 99.37823834 0.066035482 0.2457 0.40161 0.40172 -5761.213561 -5761.183937 0.97081049 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA INTS4 0.347662133 1 NA NA NA 2541 847 0.0898 0.23188 0.0186 0.207 1 1 1 1 1 1 NA NA NA 0.0597240592729169 N 1 NA 0.0597240592729169 N 0.999936002048118 NA 0.0597240592729169 N 0.9999992685819 NA 0.0597240592729169 N 0.835921807396434 NA 0.0597240592729169 N 1 0 INTS4_sequences_filtered_longestORFs_mafft_mincov_prank INTS4_all 1451 23 0.065534166740 0.069 N 0.9979 2 237, 881 N 0.9999992099641014 0 na N 0.6279142548125374 0 na N 1.0 0 na N 1.0 0 na
+ITGB1 ITGB1 ITGB1 orf8 list25_COV_list3dataset2orf integrin subunit beta 1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB yes 24 2406 802 0.08863 0.38988 0.0372 0.4199 4.944e-07 3.1724e-05 1.0091e-06 5.55005e-05 1.1028e-06 6.0654e-05 0.127 15.9223 5 15_V_0.914,387_G_0.957,580_E_0.924,752_K_0.936,778_Q_1.000 ITGB1 ENSMLUG00000017570.2 ENSMLUT00000017574.2 10 799 99.62453066 0.045400673 0.2938 0.5461 0.54338 -5214.22421 -5213.924729 0.741202805 NA NA NA ITGB1 ENSG00000150093.18 ENST00000302278.7 17 799 99.24906133 0.086420105 0.1678 0.33069 0.32447 -4625.018527 -4623.231946 0.167531983 NA NA NA ITGB1 1 1 NA NA NA 2061 687 0.10232 0.27124 0.0308 0.3012 0.0014809 0.0221197307692308 0.0038315 0.0614636458333333 0.0057988 0.0970668695652174 4.481 2.56687 7 13_V_0.945,445_K_0.928,446_E_0.938,496_E_0.956,554_R_0.934,645_K_0.959,667_Q_0.999 0.0928332056208515 Y 1.2061247788036e-06 1 778 0.0928332056208515 Y 2.90153081502746e-05 2 387, 778 0.0928332056208515 Y 4.03150583275274e-07 1 778 0.0928332056208515 Y 3.95639590396965e-20 13 387, 4, 580, 518, 519, 650, 651, 778, 77, 15, 751, 752, 662 0.0928332056208515 Y 0 10 519, 520, 556, 557, 580, 650, 651, 669, 752, 778 ITGB1_sequences_filtered_longestORFs_mafft_mincov_prank ITGB1_all 948 24 0.075389116543 0.070 Y 0.0000 7 15, 387, 442, 602, 665, 666, 815 Y 7.537730013261963e-28 1 815 Y 8.405361714688995e-41 1 815 Y 8.289317990525046e-29 1 815 Y 5.175278539688275e-34 1 815
+JAKMIP1 JAKMIP1 JAKMIP1 nsp13 list26_COV_list4dataset2nonOrf janus kinase and microtubule interacting protein 1 Gababrbp|JAMIP1|MARLIN1 no 24 2496 832 0.01403 0.35654 0.0073 0.5234 0.032632 0.165306842105263 0.0018532 0.0222963125 0.10161 0.56012 0.129 5.15252 1 277_V_0.959 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1845 615 0.02062 0.15767 0.0044 0.2154 1 1 1 1 0.99972 1 NA NA NA 0.0185026977516826 N 0.102987979648929 NA 0.0185026977516826 Y 0.00107533719157943 1 277 0.0185026977516826 N 0.384848612737669 NA 0.0185026977516826 Y 0.000823094117466943 1 277 0.0185026977516826 N 0.3909 1 277 JAKMIP1_sequences_filtered_longestORFs_mafft_mincov_prank JAKMIP1_all 2728 23 na na N 0.9992 1 354 na na 0 na na na 0 na na na 0 na na na 0 na
+KDELC1 POGLUT2 KDELC1 orf8 list23_COV_list1orf KDEL motif containing 1 EP58|ERp58|KDEL1 no 24 1509 503 0.16399 0.49371 0.0666 0.4064 0.27646 0.687759032258065 0.55105 1 0.73389 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KDELC1 1 1 NA NA NA 1233 411 0.22186 0.29863 0.0488 0.2201 0.96996 1 0.99702 1 1 1 NA NA NA 0.170482224217261 N 0.733875414344277 NA 0.170482224217261 N 0.553802031477945 NA 0.170482224217261 N 0.999859535866829 NA 0.170482224217261 N 0.0519189542177607 NA 0.170482224217261 N 0.8901 2 15, 149 POGLUT2_sequences_filtered_longestORFs_mafft_mincov_prank POGLUT2_all 692 24 0.167272623386 0.167 Y 0.0013 7 12, 30, 119, 120, 475, 540, 587 N 0.9999989941066417 0 na N 0.09821116411876424 0 na N 1.0 0 na N 1.0 0 na
+KDELC2 POGLUT3 KDELC2 orf8 list23_COV_list1orf KDEL motif containing 2 - no 24 1524 508 0.19302 0.44994 0.0662 0.3428 0.057575 0.249060393258427 0.046571 0.216022108433735 0.16748 0.796046913580247 0.531 4.88598 0 noneOver_0.9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KDELC2 1 1 NA NA NA 1173 391 0.17366 0.28161 0.0382 0.2198 1 1 1 1 0.99981 1 NA NA NA 0.19147893727673 N 0.167479721620206 NA 0.19147893727673 Y 0.0451263475577198 0 0.19147893727673 N 0.132190759330581 NA 0.19147893727673 Y 0.0347573912803538 1 6 0.19147893727673 N 1 1 6 POGLUT3_sequences_filtered_longestORFs_mafft_mincov_prank POGLUT3_all 767 24 0.197294336344 0.200 N 0.2944 3 35, 545, 767 N 0.9789947727080898 0 na N 0.14689032808088523 0 na N 0.9212719586960403 0 na N 0.13834565210816457 0 na
+KIAA1033 WASHC4 KIAA1033 nsp2 list24_COV_list2nonOrf WASH complex subunit 4 KIAA1033|MRT43|SWIP no 24 3525 1175 0.05497 0.24576 0.0145 0.2639 1 1 1 1 1 1 NA NA NA WASHC4 ENSMLUG00000007308.2 ENSMLUT00000007385.2 9 1174 94.46337308 0.033211761 0.2526 0.43697 0.43697 -6679.499731 -6679.500143 0.999588085 NA NA NA WASHC4 ENSG00000136051.13 ENST00000620430.4 16 1175 95.74468085 0.032295069 0.1108 0.18987 0.18987 -5740.674872 -5740.67551 0.999362203 NA NA NA KIAA1033 0.649735307 1 NA NA NA 3150 1050 0.04959 0.16797 0.0092 0.1849 1 1 1 1 1 1 NA NA NA 0.0553330584790591 N 1 NA 0.0553330584790591 N 0.999965000612468 NA 0.0553330584790591 N 0.999999398680483 NA 0.0553330584790591 N 0.0565535410713164 NA 0.0553330584790591 N 1 1 141 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
+LARP1 LARP1 LARP1 N list26_COV_list4dataset2nonOrf La ribonucleoprotein domain family member 1 LARP no 24 3066 1022 0.09549 0.29482 0.0258 0.2698 0.49555 1 0.79066 1 0.78293 1 NA NA NA LARP1 ENSMLUG00000002608.2 ENSMLUT00000002615.2 7 954 93.08176101 0.103751344 0.2012 0.48234 0.52496 -5512.860831 -5488.781817 3.49e-11 -5512.856226 3.95e-12 9 C800, K786, S803, L805, V214, F795, P796, S797, M799 NA NA NA NA NA NA NA NA NA NA NA NA NA LARP1 1 1 NA NA NA 2589 863 0.10596 0.20656 0.02 0.1892 0.47127 1 0.71476 1 0.77053 1 NA NA NA 0.0864017605699774 N 0.463950691835068 NA 0.0864017605699774 N 0.215330763101559 NA 0.0864017605699774 N 0.11313590249035 NA 0.0864017605699774 Y 1.54953656030345e-06 5 192, 507, 1019, 990, 207 0.0864017605699774 N 1 1 192 LARP1_sequences_filtered_longestORFs_mafft_mincov_prank LARP1_all 2718 24 0.076249252518 0.085 Y 0.0000 33 962, 986, 1000, 1343, 1352, 1370, 1385, 1680, 1702, 1716, 1726, 1745, 1854, 1956, 2049, 2078, 2079, 2081, 2235, 2390, 2428, 2469, 2488, 2573, 2601, 2619, 2669, 2670, 2686, 2687, 2688, 2689, 2700 N 0.05302745779921875 0 na Y 3.048378244134424e-11 6 1745, 1821, 1854, 2083, 2390, 2687 Y 0.04573003390017499 0 Y 0.0004496684610310375 3 1821, 1854, 2687
+LARP4B LARP4B LARP4B nsp12 list24_COV_list2nonOrf La ribonucleoprotein domain family member 4B KIAA0217|LARP5 no 24 2223 741 0.19866 0.42868 0.0622 0.3133 0.41368 0.917716091954023 0.4579 0.963341530054645 0.71903 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LARP4B ENSG00000107929.14 ENST00000612396.4 9 739 98.91745602 0.093925415 0.0827 0.12243 0.12243 -3514.543999 -3514.571678 0.972700554 NA NA NA LARP4B 1 1 NA NA NA 1740 580 0.23756 0.1925 0.0324 0.1363 1 1 1 1 1 1 NA NA NA 0.199356914974249 N 0.719035894282757 NA 0.199356914974249 N 0.456894394060393 NA 0.199356914974249 N 0.802007749199479 NA 0.199356914974249 N 0.491457565980937 NA 0.199356914974249 N 0.6444 2 87, 317 LARP4B_sequences_filtered_longestORFs_mafft_mincov_prank LARP4B_all 5775 24 0.175312895094 0.193 Y 0.0003 11 1475, 1726, 2604, 4419, 4428, 4444, 4448, 4492, 4810, 5195, 5240 N 0.9999994670553461 0 na Y 0.014491164567191335 1 5698 Y 0.00015909643979889065 0 Y 6.772873649070608e-05 1 5698
+LARP7 LARP7 LARP7 nsp8 list24_COV_list2nonOrf La ribonucleoprotein domain family member 7 ALAZS|HDCMA18P|PIP7S no 22 1755 585 0.16551 0.39095 0.0597 0.3609 0.12211 0.427385 0.17148 0.525615234375 1 1 NA NA NA LARP7 ENSMLUG00000027214.1 ENSMLUT00000026813.1 8 503 89.46322068 0.136163316 1.0096 2.02982 2.04874 -4890.2203 -4888.005039 0.109125029 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1572 524 0.13884 0.31163 0.0435 0.3131 0.56334 1 0.43042 1 0.84622 1 NA NA NA 0.201696900776511 N 0.327442110946412 NA 0.201696900776511 N 0.0935039123731266 NA 0.201696900776511 N 0.999998721213978 NA 0.201696900776511 Y 0.0116564994936257 55 513, 516, 6, 262, 264, 9, 10, 11, 267, 269, 17, 273, 409, 282, 285, 291, 420, 293, 422, 425, 427, 300, 428, 433, 308, 436, 437, 311, 439, 313, 441, 442, 317, 321, 322, 449, 325, 454, 328, 330, 211, 215, 345, 351, 229, 486, 235, 237, 242, 245, 503, 249, 507, 252, 255 0.201696900776511 N 1 0 LARP7_sequences_filtered_longestORFs_mafft_mincov_prank LARP7_all 864 24 0.209704722289 0.175 N 0.5331 6 109, 415, 486, 503, 666, 677 N 0.5891998189502629 0 na Y 0.002145546509367734 11 109, 383, 399, 419, 422, 434, 497, 658, 661, 666, 677 Y 0.040966525376057605 0 Y 8.431084951431661e-05 1 677
+LMAN2 LMAN2 LMAN2 nsp7 list26_COV_list4dataset2nonOrf lectin, mannose binding 2 C5orf8|GP36B|VIP36 no 24 1071 357 0.04915 0.43971 0.0317 0.6451 0.030744 0.159951891891892 0.015562 0.103684482758621 0.095872 0.550906268656716 1.959 3.00968 1 9_L_0.955 LMAN2 ENSMLUG00000009409.2 ENSMLUT00000009408.2 12 360 98.05555556 0.061497675 0.4011 1.01052 1.14983 -2800.905918 -2791.547389 8.62e-05 -2798.830566 0.000135309 1 S147 LMAN2 ENSG00000169223.14 ENST00000515209.5 12 326 99.0797546 0.126566544 0.1801 0.33031 0.33033 -1883.954561 -1883.954464 0.999903005 NA NA NA LMAN2 0.011501474 0.286979492 NA NA NA 711 237 0.09618 0.26238 0.0307 0.3192 0.32704 1 0.5888 1 0.61587 1 NA NA NA 0.0758905351979121 N 0.0958178773735476 NA 0.0758905351979121 Y 0.00949548363746353 1 9 0.0758905351979121 N 0.789455179927802 NA 0.0758905351979121 Y 0.0200859034562919 2 8, 9 0.0758905351979121 N 1 1 36 LMAN2_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank LMAN2_all_part1 747 24 0.081787077552 0.064 Y 0.0002 3 26, 417, 492 N 0.0893634747928795 0 na Y 2.004485221084069e-08 4 26, 27, 28, 621 Y 0.012562991117452701 0 Y 0.0015430412072925009 4 26, 28, 340, 621
+LOX LOX LOX orf8 list23_COV_list1orf lysyl oxidase AAT10 no 23 1254 418 0.12674 0.39385 0.0496 0.3916 1 1 1 1 0.82371 1 NA NA NA LOX ENSMLUG00000026720.1 ENSMLUT00000024286.1 6 417 98.56115108 0.128529144 0.3142 0.55566 0.55566 -2643.25822 -2643.258229 0.999991 NA NA NA LOX ENSG00000113083.13 ENST00000639739.1 17 417 89.6882494 0.159084185 0.1725 0.3857 0.3857 -2373.668388 -2373.668728 0.999660058 NA NA NA LOX 0.9426572 1 NA NA NA 810 270 0.09993 0.18784 0.02 0.2006 0.95383 1 0.99312 1 0.99835 1 NA NA NA 0.153145879104546 N 0.823677672295478 NA 0.153145879104546 N 0.62571517714942 NA 0.153145879104546 N 0.941027917359979 NA 0.153145879104546 N 0.25263752924758 NA 0.153145879104546 N 1 0 LOX_sequences_filtered_longestORFs_mafft_mincov_prank LOX_all 562 23 0.172116636994 0.143 Y 0.0000 4 85, 159, 335, 346 N 0.9999990803330229 0 na N 0.2641538582060904 0 na N 1.0 0 na N 0.9675385595886871 0 na
+MAP7D1 MAP7D1 MAP7D1 orf10 list25_COV_list3dataset2orf MAP7 domain containing 1 PARCC1|RPRC1 no 24 2538 846 0.19093 0.42876 0.0659 0.345 0.56264 1 0.67164 1 0.84817 1 NA NA NA MAP7D1 ENSMLUG00000012362.2 ENSMLUT00000012367.2 13 793 86.25472888 0.154264292 0.2775 0.91788 0.92033 -5765.175095 -5764.40945 0.465033887 NA NA NA MAP7D1 ENSG00000116871.15 ENST00000530975.4 16 247 90.28340081 0.139878192 0.2025 0.39017 0.39018 -1366.41079 -1366.410994 0.999796021 NA NA NA MAP7D1 1 1 NA NA NA 1788 596 0.24239 0.27063 0.048 0.1982 0.16076 0.764106172839506 0.34789 1 0.37994 1 NA NA NA 0.216481935884087 N 0.848141325200224 NA 0.216481935884087 N 0.671668072647582 NA 0.216481935884087 N 0.999997655369973 NA 0.216481935884087 N 0.992692520716805 NA 0.216481935884087 N 0.9651 6 19, 72, 80, 110, 729, 740 MAP7D1_sequences_filtered_longestORFs_mafft_mincov_prank MAP7D1_all 1517 22 0.231338346469 0.210 Y 0.0000 16 160, 221, 240, 251, 714, 716, 717, 734, 735, 737, 738, 739, 748, 764, 851, 1291 N 0.9999993949870271 0 na N 0.9999980106505751 0 na N 1.0 0 na N 0.842821573471387 0 na
+MARC1 MTARC1 01/03/2020 nsp7 list24_COV_list2nonOrf mitochondrial amidoxime reducing component 1 MOSC1 no 24 1023 341 0.30561 0.87314 0.1812 0.5928 0.52595 1 0.18997 0.554079166666667 0.82394 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 645 215 0.36972 0.31499 0.0713 0.1929 0.25792 1 0.46322 1 0.52227 1 NA NA NA 0.32990725335714 N 0.823931404091344 NA 0.32990725335714 N 0.186743175340172 NA 0.32990725335714 N 0.739346978742664 NA 0.32990725335714 N 0.22487922356507 NA 0.32990725335714 N 1 0 MTARC1_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank MTARC1_all_part1 871 24 0.259082353825 0.254 N 0.9494 6 119, 256, 300, 310, 321, 793 N 0.8746790384338535 0 na N 0.08467836426671232 0 na N 0.34610952768969544 0 na N 0.05664225599327754 0 na
+MARK1 MARK1 MARK1 orf9b list25_COV_list3dataset2orf microtubule affinity regulating kinase 1 MARK|Par-1c|Par1c no 24 2391 797 0.08147 0.24303 0.0194 0.2383 0.018441 0.112695 0.062265 0.272409375 0.14046 0.694036538461539 1.104 3.80076 2 333_I_0.942,515_A_0.962 NA NA NA NA NA NA NA NA NA NA NA NA NA MARK1 ENSG00000116141.15 ENST00000402574.5 9 781 99.23175416 0.079775242 0.0454 0.08171 0.08187 -3545.187172 -3545.0095 0.837216986 NA NA NA MARK1 0.163968089 1 NA NA NA 1980 660 0.10132 0.13152 0.0131 0.1292 0.29796 1 0.54656 1 0.58181 1 NA NA NA 0.088022451067255 N 0.140501937537598 NA 0.088022451067255 Y 0.0189042030129911 1 515 0.088022451067255 N 0.0867520396198573 NA 0.088022451067255 Y 3.35961445945517e-05 2 515, 333 0.088022451067255 Y 0.0219 1 738 MARK1_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank MARK1_all_part2 1260 23 0.062013277987 0.065 Y 0.0272 7 40, 44, 293, 306, 462, 758, 1233 Y 0.009116381763125295 1 758 Y 3.8693583251427994e-07 2 462, 758 N 0.2763740713275202 0 na Y 0.005434433476480101 1 758
+MARK2 MARK2 MARK2 orf9b list25_COV_list3dataset2orf microtubule affinity regulating kinase 2 EMK-1|EMK1|PAR-1|Par-1b|Par1b no 24 2367 789 0.01554 0.20698 0.004 0.2583 1 1 1 1 0.99909 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MARK2 0.973207517 1 NA NA NA 1857 619 0.01526 0.15055 0.0029 0.1916 1 1 1 1 0.99956 1 NA NA NA 0.0159948228686605 N 0.999095409388208 NA 0.0159948228686605 N 0.999100404878526 NA 0.0159948228686605 N 0.999999924770239 NA 0.0159948228686605 N 0.999966056522154 NA 0.0159948228686605 N 1 0 MARK2_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank MARK2_all_part1 2108 24 na na N 1.0000 1 1244 na na 0 na na na 0 na na na 0 na na na 0 na
+MARK3 MARK3 MARK3 orf9b list25_COV_list3dataset2orf microtubule affinity regulating kinase 3 CTAK1|KP78|PAR1A|Par-1a no 23 2262 754 0.07222 0.26428 0.0184 0.2547 1 1 1 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MARK3 ENSG00000075413.17 ENST00000556744.1 16 332 98.19277108 0.082112262 0.1058 0.29674 0.29722 -1892.469655 -1890.656982 0.163217273 NA NA NA MARK3 1 1 NA NA NA 1830 610 0.13101 0.1388 0.0161 0.123 0.81544 1 1 1 1 1 NA NA NA 0.0788120931284928 N 1 NA 0.0788120931284928 N 0.999973000364451 NA 0.0788120931284928 N 0.999999650874149 NA 0.0788120931284928 N 0.999999970535101 NA 0.0788120931284928 N 1 0 MARK3_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank MARK3_all_part1 3633 24 na na Y 0.0195 3 385, 491, 3611 na na 0 na na na 0 na na na 0 na na na 0 na
+MAT2B MAT2B MAT2B nsp9 list24_COV_list2nonOrf methionine adenosyltransferase 2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR no 24 1005 335 0.07161 0.22972 0.0158 0.2209 1 1 1 1 0.99968 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MAT2B 1 1 NA NA NA 915 305 0.07952 0.16724 0.0127 0.1593 1 1 1 1 0.99984 1 NA NA NA 0.0673012455706496 N 0.999678051836567 NA 0.0673012455706496 N 0.999680051194438 NA 0.0673012455706496 N 0.999999929678554 NA 0.0673012455706496 N 0.999990025742766 NA 0.0673012455706496 N 1 0 MAT2B_sequences_filtered_longestORFs_mafft_mincov_prank MAT2B_all 670 24 0.127391282546 0.123 N 0.4664 1 449 N 0.9999983677043608 0 na N 0.9952761645355965 0 na N 0.15198096442869868 0 na N 0.1512229562062779 0 na
+MDN1 MDN1 MDN1 orf7a list23_COV_list1orf midasin AAA ATPase 1 Rea1 yes 24 16815 5605 0.3016 0.46605 0.0909 0.3014 0.00096101 0.0119351241935484 0.0016419 0.0203913387096774 0.0074824 0.0872946666666667 1.069 3.56119 13 2971_S_0.982,3062_N_0.945,3154_R_0.952,3572_R_0.954,4012_P_0.957,4048_G_0.986,4079_R_0.955,4362_V_0.948,4385_T_0.930,4401_V_0.948,5015_K_0.977,5020_R_0.954,5290_N_0.930 MDN1 ENSMLUG00000006776.2 ENSMLUT00000006889.2 9 5603 96.76958772 0.151440834 0.3057 0.88231 0.89377 -44274.64223 -44236.81952 3.75e-17 -44269.81604 4.53e-16 3 I1258, R1253, H1262 MDN1 ENSG00000112159.11 ENST00000629399.2 10 5597 98.80293014 0.194996798 0.1398 0.29001 0.29048 -31963.00569 -31961.67182 0.263456239 NA NA NA MDN1 0.630980112 1 NA NA NA 14289 4763 0.31705 0.31911 0.065 0.2051 0.058877 0.372389672131148 0.13072 0.7863625 0.19823 1 0.728 3.79785 3 2650_N_0.905,3737_V_0.903,4278_K_0.939 0.289531854307273 Y 0.00761319768675502 0 0.289531854307273 Y 0.0014055156961773 8 2971, 3154, 3572, 4012, 4048, 4079, 5015, 5020 0.289531854307273 Y 0.0103389150732878 0 0.289531854307273 Y 1.27830844874889e-06 0 0.289531854307273 N 0.6616 26 244, 301, 2056, 2398, 2917, 2954, 3154, 3293, 3309, 3572, 3609, 4010, 4012, 4048, 4241, 4338, 4391, 4486, 4535, 4770, 4839, 5015, 5020, 5030, 5039, 5266 MDN1_sequences_filtered_longestORFs_mafft_mincov_prank MDN1_all 5863 24 0.250623848616 0.255 Y 0.0003 75 275, 330, 342, 481, 546, 553, 703, 714, 1399, 1569, 1691, 1834, 2115, 2149, 2168, 2501, 2510, 2536, 2629, 2944, 3066, 3091, 3130, 3162, 3174, 3265, 3300, 3316, 3413, 3418, 3421, 3469, 3532, 3584, 3587, 3684, 3763, 3857, 3917, 4144, 4155, 4158, 4160, 4196, 4313, 4320, 4323, 4385, 4465, 4466, 4483, 4515, 4535, 4618, 4655, 4673, 4674, 4685, 4753, 4817, 4901, 4936, 5092, 5098, 5200, 5202, 5219, 5238, 5307, 5390, 5474, 5517, 5557, 5726, 5727 N 0.9999975629864503 0 na Y 9.882460511621072e-05 1 4535 N 1.0 0 na Y 9.830704087230954e-06 0
+MEPCE MEPCE MEPCE nsp8 list24_COV_list2nonOrf methylphosphate capping enzyme BCDIN3 no 22 2079 693 0.15687 0.42088 0.0557 0.355 0.074341 0.301276684210526 0.14289 0.466208898305085 0.21194 0.93789540229885 0.779 5.11823 4 64_-_0.976,286_L_0.925,377_A_0.937,508_P_0.923 MEPCE ENSMLUG00000009678.2 ENSMLUT00000009684.2 8 681 92.80469897 0.157081921 0.2342 0.5599 0.57057 -4422.638039 -4418.472185 0.015516458 -4422.297898 0.005672746 NA NA NA NA NA NA NA NA NA NA NA NA NA NA MEPCE 0.000504613 0.034161031 methylphosphate capping enzyme NA NA NA 1518 506 0.12137 0.2415 0.027 0.2222 0.1999 0.894901162790698 0.38513 1 1 1 NA NA NA 0.187776543655125 N 0.211922211188711 NA 0.187776543655125 N 0.175479509127778 NA 0.187776543655125 N 0.559181379615526 NA 0.187776543655125 Y 0.00233440984313392 4 64, 377, 508, 286 0.187776543655125 N 0.7296 1 377 MEPCE_sequences_filtered_longestORFs_mafft_mincov_prank MEPCE_all 973 22 0.149771190695 0.149 N 0.9796 2 41, 639 N 0.9999979106554746 0 na N 0.6189175407089369 0 na N 0.9093729344679998 0 na N 0.28996356552932095 0 na
+MFGE8 MFGE8 MFGE8 orf8 list25_COV_list3dataset2orf milk fat globule-EGF factor 8 protein BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47 no 24 1164 388 0.18196 0.78587 0.1345 0.739 0.54812 1 0.32569 0.788620440251572 0.95525 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 771 257 0.11983 0.38704 0.0527 0.4399 1 1 1 1 1 1 NA NA NA 0.265047298215549 N 0.955243497305714 NA 0.265047298215549 N 0.320945805603937 NA 0.265047298215549 N 0.632455151587198 NA 0.265047298215549 N 0.0918595486541463 NA 0.265047298215549 N 0.7487 2 231, 363 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
+MIB1 MIB1 MIB1 nsp9 list24_COV_list2nonOrf mindbomb E3 ubiquitin protein ligase 1 DIP-1|DIP1|LVNC7|MIB|ZZANK2|ZZZ6 no 24 3021 1007 0.00559 0.26166 0.0018 0.3281 1 1 1 1 0.99846 1 NA NA NA MIB1 ENSMLUG00000004022.2 ENSMLUT00000004026.2 11 931 99.67776584 0.007742272 0.2488 0.47316 0.47675 -5717.506378 -5712.206308 0.004991245 -5713.054254 0.192826091 NA MIB1 ENSG00000101752.11 ENST00000261537.6 12 1007 92.85004965 0.026255584 0.123 0.18047 0.1825 -4704.826366 -4701.178491 0.026046419 -4701.735465 0.291225348 NA MIB1 0.88359204 1 NA NA NA 2535 845 0.01116 0.14901 0.0022 0.1932 1 1 1 1 0.99945 1 NA NA NA 0.00564024931541675 N 0.998453197533809 NA 0.00564024931541675 N 0.997848318193447 NA 0.00564024931541675 N 0.999999989459866 NA 0.00564024931541675 N 0.999998365784875 NA 0.00564024931541675 N 1 0 MIB1_sequences_filtered_longestORFs_mafft_mincov_prank MIB1_all 1103 24 0.007412542081 0.007 N 1.0000 0 na N 0.999999995030521 0 na N 0.9997613544724151 0 na N 0.9970044955027636 0 na N 0.9970044955036704 0 na
+MIPOL1 MIPOL1 MIPOL1 nsp13 list26_COV_list4dataset2nonOrf mirror-image polydactyly 1 CCDC193 no 24 1329 443 0.44036 0.37986 0.0967 0.2195 0.093849 0.36131865 0.22859 0.6286225 0.24618 1 7.899 3.11818 0 noneOver_0.9 NA NA NA NA NA NA NA NA NA NA NA NA NA MIPOL1 ENSG00000151338.18 ENST00000545536.5 18 425 97.41176471 0.574467255 0.1035 0.39646 0.42094 -2643.795389 -2637.189776 0.001352754 -2643.657324 0.000322479 2 R9, C20 MIPOL1 0.371779525 1 NA NA NA 1218 406 0.50665 0.30905 0.0832 0.1643 0.095599 0.5257945 0.23561 1 0.24936 1 8.327 3.60215 1 46_C_0.905 0.526457879273052 N 0.246099833042213 NA 0.526457879273052 N 0.210037540490627 NA 0.526457879273052 N 0.70197877521459 NA 0.526457879273052 N 0.443440671717539 NA 0.526457879273052 N 1 0 MIPOL1_sequences_filtered_longestORFs_mafft_mincov_prank MIPOL1_all 1757 24 0.512484277696 0.437 N 0.4608 6 122, 129, 150, 227, 292, 408 Y 8.425034731629987e-05 1 1172 Y 6.773362808447534e-05 1 1172 Y 5.425421818460034e-07 1 1172 Y 4.948555179068949e-07 2 152, 1172
+MOGS MOGS MOGS nsp7 list26_COV_list4dataset2nonOrf mannosyl-oligosaccharide glucosidase CDG2B|CWH41|DER7|GCS1 no 22 2514 838 0.26344 0.42818 0.0758 0.2877 0.32782 0.76957743902439 0.52304 1 0.61797 1 NA NA NA MOGS ENSMLUG00000002652.1 ENSMLUT00000002648.1 10 837 95.69892473 0.168764689 0.2855 0.92877 0.93093 -6836.753533 -6835.811684 0.389906232 NA NA NA MOGS ENSG00000115275.11 ENST00000452063.6 18 732 98.63387978 0.209879997 0.134 0.39272 0.39394 -4654.436421 -4653.417236 0.360888945 NA NA NA MOGS 0.003943108 0.140860154 NA NA NA 1992 664 0.30752 0.32142 0.0623 0.2025 0.060067 0.372996693548387 0.17039 0.934465492957747 0.17011 1 4.824 3.21378 2 94_R_0.910,243_I_0.959 0.25451077225751 N 0.467772131566529 NA 0.25451077225751 N 0.451608330609654 NA 0.25451077225751 N 0.792198532967814 NA 0.25451077225751 N 0.141815847088898 NA 0.25451077225751 N 1 5 420, 520, 570, 668, 682 MOGS_sequences_filtered_longestORFs_mafft_mincov_prank MOGS_all 856 24 0.205738341931 0.205 N 0.4746 13 184, 256, 318, 349, 370, 386, 408, 439, 572, 589, 624, 631, 687 N 0.9999974359876561 0 na N 0.7188296929103337 0 na N 1.0 0 na N 0.5856692901443464 0 na
+MOV10 MOV10 MOV10 N list26_COV_list4dataset2nonOrf Mov10 RISC complex RNA helicase fSAP113|gb110 no 24 3012 1004 0.0581 0.29374 0.0184 0.3167 1 1 1 1 1 1 NA NA NA MOV10 ENSMLUG00000009815.2 ENSMLUT00000009826.2 12 896 86.27232143 0.214017978 0.3471 1.48397 1.51014 -7834.294675 -7826.58329 0.000447701 -7830.832117 0.003556047 1 T202 MOV10 ENSG00000155363.18 ENST00000357443.2 17 1004 99.00398406 0.057554153 0.1226 0.26332 0.26367 -5540.969219 -5540.930533 0.962052746 NA NA NA MOV10 0.099789404 0.957471912 NA NA NA 2391 797 0.05359 0.17042 0.01 0.1865 1 1 1 1 0.99967 1 NA NA NA 0.0703119112905245 N 1 NA 0.0703119112905245 N 0.999964000647628 NA 0.0703119112905245 N 0.999997821879886 NA 0.0703119112905245 N 0.2535395287362 NA 0.0703119112905245 N 0.9827 0 MOV10_sequences_filtered_longestORFs_mafft_mincov_prank MOV10_all 2125 24 0.095908440356 0.091 Y 0.0006 7 467, 600, 862, 937, 1753, 1799, 1822 N 0.9999616081998488 0 na Y 0.0020290899869964403 2 371, 1795 N 0.3516918193780413 0 na Y 0.010021725425469637 2 371, 1795
+MPHOSPH10 MPHOSPH10 MPHOSPH10 nsp8 list26_COV_list4dataset2nonOrf M-phase phosphoprotein 10 CT90|MPP10|MPP10P|PPP1R106 no 23 2073 691 0.36945 0.40726 0.0942 0.255 0.0081673 0.0641716428571429 0.023765 0.142961328125 0.032106 0.2472162 1.789 5.25551 1 330_G_0.983 NA NA NA NA NA NA NA NA NA NA NA NA NA MPHOSPH10 ENSG00000124383.8 ENST00000498451.2 16 463 91.57667387 0.455217257 0.1392 0.46529 0.47817 -2872.957619 -2869.397157 0.028425689 -2872.894086 0.008178987 1 N321 MPHOSPH10 1 1 NA NA NA 1815 605 0.39528 0.28112 0.0673 0.1703 0.84373 1 0.96246 1 0.98084 1 NA NA NA 0.344816978892958 Y 0.0321014204193771 1 330 0.344816978892958 Y 0.0258545675305076 1 330 0.344816978892958 N 0.140258260655574 NA 0.344816978892958 Y 0.0480463480750579 1 330 0.344816978892958 N 1 2 4, 301 MPHOSPH10_sequences_filtered_longestORFs_mafft_mincov_prank MPHOSPH10_all 806 21 0.312304114872 0.320 Y 0.0001 8 72, 187, 197, 301, 323, 400, 418, 494 N 0.06584789338899043 0 na Y 0.011553122524699911 1 400 Y 0.03111703066108125 1 400 Y 0.0027203356651058553 1 400
+MRPS2 MRPS2 MRPS2 nsp8 list26_COV_list4dataset2nonOrf mitochondrial ribosomal protein S2 CGI-91|COXPD36|MRP-S2|S2mt no 24 897 299 0.15502 1.17978 0.1996 1.2876 0.427 0.928785310734463 0.12306 0.415597368421053 1 1 NA NA NA MRPS2 ENSMLUG00000013877.2 ENSMLUT00000013879.2 13 244 93.03278689 0.170502026 0.4602 1.8283 1.84919 -2336.049023 -2335.381647 0.513053064 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 462 154 0.16389 0.5677 0.0967 0.5902 0.32466 1 0.26986 1 0.67062 1 NA NA NA 0.5005 N 1 NA 0.5005 N 0.151636965461335 NA 0.5005 Y 4.96939708137214e-11 0 0.5005 N 0.0646842731918779 NA 0.5005 N 0.1379 6 4, 27, 42, 124, 276, 287 MRPS2_sequences_filtered_longestORFs_mafft_mincov_prank MRPS2_all 586 24 0.207851765282 0.132 Y 0.0015 7 114, 265, 373, 408, 506, 539, 546 N 0.9999998996213485 0 na N 0.11602899210880209 0 na N 1.0 0 na N 0.0501368004807428 0 na
+MRPS25 MRPS25 MRPS25 nsp8 list24_COV_list2nonOrf mitochondrial ribosomal protein S25 MRP-S25|RPMS25 no 24 522 174 0.09937 0.4868 0.0562 0.5651 0.52124 1 0.45691 0.963341530054645 0.81267 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MRPS25 ENSG00000131368.7 ENST00000447299.1 3 111 97.2972973 0.043297522 0.0602 0.07156 0.07156 -453.886885 -453.886924 0.999961001 NA NA NA NA NA NA NA NA 426 142 0.09407 0.31907 0.0356 0.3785 0.77024 1 0.76365 1 0.95724 1 NA NA NA 0.157485549963131 N 0.812615679616396 NA 0.157485549963131 N 0.443027692324644 NA 0.157485549963131 N 0.883643601391919 NA 0.157485549963131 N 0.495560278916698 NA 0.157485549963131 N 0.2214 1 170 MRPS25_sequences_filtered_longestORFs_mafft_mincov_prank MRPS25_all 308 24 0.072366477342 0.067 N 0.0628 2 57, 251 N 0.9999999836779808 0 na N 0.1225169592175207 0 na N 1.0 0 na N 0.11406349636372963 0 na
+MRPS27 MRPS27 MRPS27 nsp8 list24_COV_list2nonOrf mitochondrial ribosomal protein S27 MRP-S27|S27mt yes 24 1290 430 0.43502 0.57317 0.1371 0.3151 0.0040356 0.0361326976744186 0.014362 0.09966 0.015923 0.13932625 10.158 2.68743 1 423_K_0.978 MRPS27 ENSMLUG00000007355.2 ENSMLUT00000007349.2 10 327 94.18960245 0.219675263 0.5466 1.53511 1.53918 -3189.971077 -3188.848572 0.325463487 NA NA NA MRPS27 ENSG00000113048.16 ENST00000522095.1 17 95 96.84210526 0.505373385 0.1481 0.51248 0.52516 -650.283561 -649.189016 0.334691857 NA NA NA MRPS27 0.956319904 1 NA NA NA 1086 362 0.4386 0.42959 0.1022 0.2331 0.0016255 0.02244275 0.0063605 0.087456875 0.0069489 0.10701306 4.544 4.59989 4 6_L_0.923,17_Y_0.927,211_C_0.900,356_K_0.990 0.410601371894294 Y 0.0170626912040744 0 0.410601371894294 Y 0.0159754677343775 1 423 0.410601371894294 N 0.0667532412717373 NA 0.410601371894294 Y 0.0133895315615949 1 423 0.410601371894294 N 0.8989 3 381, 393, 423 MRPS27_sequences_filtered_longestORFs_mafft_mincov_prank MRPS27_all 600 24 0.395788246295 0.406 N 0.1306 14 90, 105, 150, 242, 301, 339, 486, 522, 534, 545, 557, 567, 575, 587 N 0.07984023514681617 0 na Y 0.013622007442688537 2 462, 587 N 0.064441335254013 0 na Y 0.011231870065595896 2 462, 587
+MRPS5 MRPS5 MRPS5 nsp8 list26_COV_list4dataset2nonOrf mitochondrial ribosomal protein S5 MRP-S5|S5mt yes 24 1293 431 0.51614 0.94585 0.2491 0.4827 5.1625e-06 0.00019875625 1.4829e-05 0.00051869125 2.4967e-05 0.000910735 1.999 5.52626 4 17_-_0.930,48_C_0.978,136_H_0.974,351_H_1.000 MRPS5 ENSMLUG00000003183.2 ENSMLUT00000003187.2 9 432 88.19444444 0.186073572 0.4689 1.0865 1.10563 -3339.688105 -3336.94474 0.064353433 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MRPS5 0.979691368 1 NA NA NA 933 311 0.56675 0.66983 0.1855 0.3273 0.023793 0.20818875 0.067951 0.544313 0.071387 0.677712682926829 1.274 6.33775 3 23_C_0.984,68_S_0.901,180_I_0.956 0.522388078115304 Y 2.49652425114657e-05 1 351 0.522388078115304 Y 1.28216039652965e-05 3 48, 136, 351 0.522388078115304 Y 0.00579412589909054 1 351 0.522388078115304 Y 0.00113086391939832 1 351 0.522388078115304 Y 0.007 10 16, 17, 48, 93, 105, 136, 201, 258, 347, 351 MRPS5_sequences_filtered_longestORFs_mafft_mincov_prank MRPS5_all 1261 24 0.416601635924 0.417 Y 0.0000 16 165, 306, 309, 314, 330, 375, 387, 557, 789, 893, 894, 928, 982, 1061, 1100, 1248 N 0.9999981841791056 0 na N 0.25629686803992613 0 na Y 0.011855065907644069 1 1100 Y 0.005753194576077027 1 1100
+MTCH1 MTCH1 MTCH1 orf6 list25_COV_list3dataset2orf mitochondrial carrier 1 CGI-64|PIG60|PSAP|SLC25A49 no 24 1170 390 0.01463 0.31726 0.0058 0.3982 0.40247 0.90087761627907 0.19495 0.560117537313433 0.70179 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MTCH1 1 1 NA NA NA 828 276 0.01403 0.1865 0.0033 0.2357 1 1 1 1 1 1 NA NA NA 0.0167601011299119 N 0.701682679959052 NA 0.0167601011299119 N 0.156358629988659 NA 0.0167601011299119 N 0.669806121151127 NA 0.0167601011299119 Y 0.0383875104000892 1 4 0.0167601011299119 N 0.4914 1 4 MTCH1_sequences_filtered_longestORFs_mafft_mincov_prank MTCH1_all 1228 24 0.106148621761 0.100 N 1.0000 1 16 N 0.9999998145304007 0 na N 0.9999980835441594 0 na N 1.0 0 na N 0.9990004998331715 0 na
+MYCBP2 MYCBP2 MYCBP2 nsp12 list26_COV_list4dataset2nonOrf MYC binding protein 2, E3 ubiquitin protein ligase Myc-bp2|PAM|Phr no 22 14037 4679 0.0308 0.25436 0.0089 0.2894 0.98184 1 0.43704 0.961245027624309 1 1 NA NA NA MYCBP2 ENSMLUG00000006495.2 ENSMLUT00000006549.2 7 4440 97.7027027 0.025368008 0.3005 0.51156 0.51209 -26822.6496 -26820.87724 0.169931987 NA NA NA MYCBP2 ENSG00000005810.17 ENST00000612956.4 16 276 84.7826087 0.0556612 0.0881 0.1688 0.17528 -1164.045643 -1162.450136 0.20280568 NA NA NA MYCBP2 0.988058803 1 NA NA NA 12465 4155 0.04038 0.16491 0.0075 0.1869 1 1 0.24673 1 1 1 NA NA NA 0.032205328485639 N 1 NA 0.032205328485639 N 0.123534723560557 NA 0.032205328485639 N 0.999999515002973 NA 0.032205328485639 Y 7.91137937000655e-06 11 2721, 2018, 2339, 3619, 2342, 136, 2622, 2763, 2993, 2712, 94 0.032205328485639 N 0.9846 2 94, 2750 MYCBP2_sequences_filtered_longestORFs_D358gp1_prank MYCBP2_358-1 6174 9 0.036536439670 0.052 Y 0.0199 1 4046 Y 0.00012590724553983797 2 20, 4046 Y 7.794892423779286e-07 1 4046 Y 1.8285266951132942e-06 0 Y 1.5254461930603552e-21 1 4046
+NARS2 NARS2 NARS2 nsp8 list24_COV_list2nonOrf asparaginyl-tRNA synthetase 2, mitochondrial DFNB94|SLM5|asnRS no 24 1434 478 0.39823 0.55805 0.1275 0.3202 0.28308 0.693194936708861 0.53869 1 0.56167 1 NA NA NA NARS2 ENSMLUG00000030064.1 ENSMLUT00000023526.1 8 479 97.07724426 0.217431908 0.2764 0.77397 0.78946 -3577.837957 -3571.569958 0.001896019 -3577.271359 0.000733334 3 R200, G204, A286 NA NA NA NA NA NA NA NA NA NA NA NA NA NARS2 0.100191532 0.958813731 NA NA NA 1203 401 0.41312 0.45039 0.1051 0.2543 0.12046 0.6023 0.23605 1 0.29853 1 NA NA NA 0.407543317454466 N 0.550138067742244 NA 0.407543317454466 N 0.547893693947141 NA 0.407543317454466 N 0.557689784892532 NA 0.407543317454466 N 0.0707496028579816 NA 0.407543317454466 N 0.2935 4 58, 116, 152, 205 NARS2_sequences_filtered_longestORFs_mafft_mincov_prank NARS2_all 873 23 0.327580620578 0.329 Y 0.0000 7 80, 88, 99, 193, 246, 408, 435 N 0.9999998411340256 0 na N 0.9972664067752461 0 na N 1.0 0 na N 0.9704455335478727 0 na
+NAT14 NAT14 NAT14 nsp7 list26_COV_list4dataset2nonOrf N-acetyltransferase 14 (putative) KLP1 no 22 621 207 0.04689 0.58635 0.0362 0.773 0.97917 1 1 1 0.99958 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NAT14 ENSG00000090971.4 ENST00000588985.1 18 173 92.48554913 0.485640999 0.2943 1.13529 1.55491 -1403.667641 -1368.700723 6.52e-16 -1402.496799 2.01e-16 9 S147, L149, S150, P152, Q153, A154, R156, A157, I158 NA NA NA NA NA 411 137 0.05402 0.27709 0.0199 0.3693 1 1 0.39089 1 0.92468 1 NA NA NA 0.068638189412957 N 0.992261100679507 NA 0.068638189412957 N 0.998608968382722 NA 0.068638189412957 N 0.984335779438203 NA 0.068638189412957 N 0.706843088503676 NA 0.068638189412957 Y 0.0012 1 160 NAT14_sequences_filtered_longestORFs_mafft_mincov_prank NAT14_all 895 22 0.051237159962 0.069 Y 0.0000 3 566, 568, 849 N 0.9999996429397198 0 na N 0.9974875609932363 0 na Y 0.026569269845437157 0 Y 0.005782032583908955 1 566
+NDFIP2 NDFIP2 NDFIP2 orf9c list24_COV_list2nonOrf Nedd4 family interacting protein 2 N4WBP5A no 24 1017 339 0.26963 0.48829 0.0892 0.3307 0.1407 0.466978448275862 0.22078 0.620440145985401 0.32204 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 747 249 0.22175 0.23705 0.0397 0.179 1 1 1 1 0.69866 1 NA NA NA 0.261371731224544 N 0.322020844841612 NA 0.261371731224544 N 0.22045713546 NA 0.261371731224544 N 0.732366765704004 NA 0.261371731224544 N 0.59540360159885 NA 0.261371731224544 N 1 2 70, 88 NDFIP2_sequences_filtered_longestORFs_mafft_mincov_prank NDFIP2_all 438 24 0.318148333387 0.323 Y 0.0169 0 na N 0.6113666644127715 0 na N 0.380047992057359 0 na N 0.5700677873780715 0 na N 0.18068501722730326 0 na
+NDUFAF1 NDUFAF1 NDUFAF1 orf9c list24_COV_list2nonOrf NADH:ubiquinone oxidoreductase complex assembly factor 1 CGI-65|CGI65|CIA30 no 25 984 328 0.41096 0.68131 0.1695 0.4123 0.038447 0.187368291139241 0.10122 0.37114 0.11757 0.628672916666667 19.079 1.7727 6 74_S_0.952,91_I_0.910,178_T_0.906,179_R_0.900,198_M_0.919,275_P_0.934 NDUFAF1 ENSMLUG00000001623.1 ENSMLUT00000001622.1 14 328 96.34146341 0.234797941 0.2964 1.11821 1.11923 -3070.494797 -3070.184718 0.733389016 NA NA NA NDUFAF1 ENSG00000137806.8 ENST00000558719.1 18 191 100 0.673846993 0.1447 0.60117 0.61052 -1423.781138 -1420.81047 0.051269051 NA NA NA NA NA NA NA NA 828 276 0.51821 0.49325 0.1357 0.2619 0.024753 0.211775666666667 0.078772 0.583215769230769 0.080114 0.7009975 17.973 2.23814 3 67_S_0.970,119_T_0.910,170_M_0.956 0.471389772917656 N 0.117567928211771 NA 0.471389772917656 N 0.111688447791112 NA 0.471389772917656 Y 0.0175723877633478 0 0.471389772917656 Y 0.00141798236996695 13 225, 198, 230, 137, 9, 74, 76, 177, 178, 179, 275, 21, 91 0.471389772917656 N 0.6877 0 NDUFAF1_sequences_filtered_longestORFs_mafft_mincov_prank NDUFAF1_all 450 26 0.378088629476 0.344 N 0.7905 3 28, 267, 293 N 0.05031251612356678 0 na Y 0.0038219225107270363 3 9, 179, 261 N 0.09856884903487213 0 na Y 0.006929275615721499 1 9
+NDUFAF2 NDUFAF2 NDUFAF2 nsp7 list24_COV_list2nonOrf NADH:ubiquinone oxidoreductase complex assembly factor 2 B17.2L|MMTN|NDUFA12L|mimitin yes 24 510 170 0.54117 0.76264 0.2107 0.3894 8.7449e-05 0.00198046264705882 0.00044116 0.00707694166666667 0.00045325 0.0102647794117647 4.784 6.9349 5 10_A_0.931,37_Q_0.983,94_-_0.973,98_-_0.998,106_-_0.967 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NDUFAF2 0.165924363 1 NA NA NA 435 145 0.56512 0.68089 0.1926 0.3408 0.00018537 0.005097675 0.00053012 0.0145783 0.00078464 0.0248221346153846 3.157 10.47691 4 47_I_0.913,77_-_0.988,81_-_0.999,87_-_0.970 0.634517231784857 Y 0.000491753983532962 2 37, 98 0.634517231784857 Y 0.000456902745700776 4 37, 94, 98, 106 0.634517231784857 Y 0.00139388651264575 6 64, 98, 37, 10, 106, 94 0.634517231784857 Y 9.60496275315175e-05 5 64, 98, 37, 94, 106 0.634517231784857 Y 0 1 37 NDUFAF2_sequences_filtered_longestORFs_mafft_mincov_prank NDUFAF2_all 248 23 0.631156540650 0.556 Y 0.0000 8 26, 53, 111, 142, 154, 155, 162, 234 Y 3.620174373133328e-05 4 53, 111, 150, 154 Y 4.768160182666211e-06 4 53, 111, 150, 154 Y 1.0079569546030942e-05 2 150, 154 Y 1.872165254167919e-07 5 26, 53, 150, 154, 185
+NDUFB9 NDUFB9 NDUFB9 orf9c list26_COV_list4dataset2nonOrf NADH:ubiquinone oxidoreductase subunit B9 B22|CI-B22|LYRM3|UQOR22 yes 24 540 180 0.29487 0.61954 0.1254 0.4252 0.0005814 0.00771858620689655 0.0024264 0.0253382027027027 0.0030169 0.041482375 5.154 4.34856 4 4_-_0.959,8_-_0.995,74_R_0.976,179_V_0.987 NDUFB9 ENSMLUG00000003765.2 ENSMLUT00000003764.2 10 180 96.66666667 0.108088134 0.4424 1.24592 1.24085 -1570.65544 -1567.125319 0.02930137 -1569.387372 0.033420532 1 I150 NA NA NA NA NA NA NA NA NA NA NA NA NA NDUFB9 3.99e-05 0.005151697 NADH:ubiquinone oxidoreductase subunit B9 NA NA NA The protein encoded by this gene is a subunit of the mitochondrial oxidative phosphorylation complex I (nicotinamide adenine dinucleotide: ubiquinone oxidoreductase). Complex I is localized to the inner mitochondrial membrane and functions to dehydrogenate nicotinamide adenine dinucleotide and to shuttle electrons to coenzyme Q. Complex I deficiency is the most common defect found in oxidative phosphorylation disorders and results in a range of conditions, including lethal neonatal disease, hypertrophic cardiomyopathy, liver disease, and adult-onset neurodegenerative disorders. 420 140 0.27997 0.39454 0.0798 0.2849 0.068983 0.402400833333333 0.18325 0.979878472222222 0.19193 1 7.758 3.2472 3 70_L_0.964,72_N_0.951,139_V_0.942 0.310423365940474 N 0.059686345699142 NA 0.310423365940474 N 0.0511929731253905 NA 0.310423365940474 N 0.0866951606025762 NA 0.310423365940474 Y 0.000447128322506547 11 99, 4, 102, 8, 169, 74, 106, 179, 58, 124, 95 0.310423365940474 Y 0.0036 1 74 NDUFB9_sequences_filtered_longestORFs_mafft_mincov_prank NDUFB9_all 939 25 0.327075612351 0.329 Y 0.0000 8 264, 271, 279, 296, 340, 368, 422, 777 N 0.2672952783601943 0 na Y 0.004655447162966287 3 270, 340, 777 Y 0.0359006456130128 0 Y 0.00036705458059481806 1 777
+NEK9 NEK9 NEK9 nsp9 list24_COV_list2nonOrf NIMA related kinase 9 APUG|LCCS10|NC|NERCC|NERCC1 no 24 2955 985 0.10566 0.27705 0.0265 0.2509 1 1 1 1 1 1 NA NA NA NEK9 ENSMLUG00000010541.2 ENSMLUT00000010565.2 9 978 90.08179959 0.068599531 0.2558 0.49516 0.4948 -5775.797711 -5771.999836 0.02241836 -5774.769078 0.018602691 3 A34, G35, S28 NA NA NA NA NA NA NA NA NA NA NA NA NA NEK9 0.368858038 1 NA NA NA 2502 834 0.11821 0.19585 0.0207 0.1755 1 1 1 1 1 1 NA NA NA 0.108618706210994 N 1 NA 0.108618706210994 N 0.999952001152103 NA 0.108618706210994 N 0.999996594521122 NA 0.108618706210994 N 0.990997493176245 NA 0.108618706210994 Y 0 17 24, 42, 44, 311, 332, 429, 480, 541, 625, 755, 764, 871, 876, 898, 909, 916, 935 NEK9_sequences_filtered_longestORFs_mafft_mincov_prank NEK9_all 1091 24 0.082369224818 0.083 N 0.9698 1 371 N 0.9999988128772882 0 na N 0.11248384117876256 0 na N 1.0 0 na N 0.5488116360938269 0 na
+NEU1 NEU1 NEU1 orf8 list23_COV_list1orf neuraminidase 1 NANH|NEU|SIAL1 no 23 1251 417 0.14615 0.50214 0.0634 0.4336 1 1 1 1 0.80574 1 NA NA NA NEU1 ENSMLUG00000004882.2 ENSMLUT00000004881.2 12 417 83.45323741 0.09628246 0.4298 1.22209 1.23249 -3224.358725 -3218.354531 0.002468378 -3221.193981 0.017170129 2 V115, G27 NA NA NA NA NA NA NA NA NA NA NA NA NA NEU1 0.093714705 0.922593508 NA NA NA 873 291 0.11676 0.25249 0.0268 0.2295 1 1 1 1 0.99982 1 NA NA NA 0.15801443745081 N 0.805732884671199 NA 0.15801443745081 N 0.655707810556496 NA 0.15801443745081 N 0.94923182131557 NA 0.15801443745081 Y 0.0378850907623248 4 18, 11, 14, 47 0.15801443745081 N 0.0831 1 380 NEU1_sequences_filtered_longestORFs_mafft_mincov_prank NEU1_all 592 23 na na na na 0 na na na 0 na na na 0 na na na 0 na na na 0 na
+NGDN NGDN NGDN nsp8 list24_COV_list2nonOrf neuroguidin C14orf120|CANu1|LCP5|NGD|lpd-2 no 24 948 316 0.30905 0.40311 0.0812 0.2628 0.11631 0.414623611111111 0.24592 0.657494444444444 0.28287 1 NA NA NA NGDN ENSMLUG00000017232.2 ENSMLUT00000017233.2 11 320 89.375 0.152354448 0.3111 1.03219 1.03483 -2523.840779 -2523.396709 0.64142052 NA NA NA NGDN ENSG00000129460.15 ENST00000556699.1 16 75 96 0.340887187 0.1089 0.25673 0.29094 -404.053622 -401.716208 0.096577064 NA NA NA NGDN 1 1 NA NA NA 795 265 0.39216 0.31231 0.0715 0.1822 0.32061 1 0.57456 1 0.61019 1 NA NA NA 0.292156158895051 N 0.282823853760636 NA 0.292156158895051 N 0.248986898591525 NA 0.292156158895051 N 0.41245903961592 NA 0.292156158895051 N 0.263100154563802 NA 0.292156158895051 N 0.1785 4 4, 121, 254, 295 NGDN_sequences_filtered_longestORFs_mafft_mincov_prank NGDN_all 403 24 0.196746297282 0.203 N 0.2357 5 4, 164, 257, 308, 328 N 0.9999996749607436 0 na N 0.3367567017973967 0 na N 1.0 0 na N 0.6107912690659221 0 na
+NGLY1 NGLY1 NGLY1 orf8 list23_COV_list1orf N-glycanase 1 CDDG|CDG1V|PNG1|PNGase no 23 1968 656 0.28738 0.44287 0.0887 0.3087 0.22347 0.613433333333333 0.39263 0.873771965317919 0.49853 1 NA NA NA NGLY1 ENSMLUG00000001704.2 ENSMLUT00000001705.2 9 615 98.69918699 0.258973023 0.2775 0.7174 0.72344 -4501.119256 -4499.937154 0.306633517 NA NA NA NGLY1 ENSG00000151092.16 ENST00000428257.5 11 637 85.87127159 0.310338885 0.0885 0.23751 0.27515 -3044.408442 -3022.246211 2.37e-10 -3034.104948 1.12e-06 6 S32, L34, L355, L36, Y38, P138 NA NA NA NA NA 1716 572 0.31837 0.33199 0.0713 0.2238 0.48412 1 0.76538 1 0.79131 1 NA NA NA 0.292273867087885 na NA NA 0.292273867087885 na NA NA 0.292273867087885 N 0.307054776225466 NA 0.292273867087885 Y 0.00672755672677823 3 153, 139, 278 0.292273867087885 na NA 0 NGLY1_sequences_filtered_longestORFs_mafft_mincov_prank NGLY1_all 1538 24 0.292983182049 0.275 Y 0.0000 8 44, 532, 598, 669, 1047, 1056, 1515, 1520 N 0.06149275202982891 0 na Y 0.0010796041125753367 2 511, 525 N 0.12075398317951777 0 na Y 0.03136696531192716 2 511, 525
+NIN NIN NIN nsp13 list26_COV_list4dataset2nonOrf ninein SCKL7 no 24 6408 2136 0.30293 0.48783 0.0957 0.3158 0.76324 1 0.94107 1 0.95656 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NIN ENSG00000100503.23 ENST00000245441.9 18 2134 98.87535145 0.202455774 0.1696 0.44163 0.44404 -14232.14747 -14231.53816 0.543722648 NA NA NA NIN 0.00019421 0.016491925 ninein NA NA NA This gene encodes one of the proteins important for centrosomal function. This protein is important for positioning and anchoring the microtubules minus-ends in epithelial cells. Localization of this protein to the centrosome requires three leucine zippers in the central coiled-coil domain. 5415 1805 0.30366 0.31705 0.0633 0.2084 0.36495 1 0.66019 1 0.70868 1 NA NA NA 0.27856067292478 N 0.957621186883481 NA 0.27856067292478 N 0.785137042502684 NA 0.27856067292478 N 0.999990600585598 NA 0.27856067292478 N 0.433236313077653 NA 0.27856067292478 N 0.4011 12 495, 580, 935, 1136, 1245, 1337, 1383, 1639, 1641, 1679, 1907, 1983 NIN_sequences_filtered_longestORFs_mafft_mincov_prank NIN_all 10697 22 0.211191421675 0.224 N 0.9199 18 870, 997, 1333, 1339, 1397, 1493, 8963, 9014, 9230, 9320, 9441, 9530, 9534, 9538, 9540, 9605, 9744, 10042 N 0.9999960651953295 0 na N 0.8519489054018843 0 na na na 0 na na na 0 na
+NINL NINL NINL nsp13 list26_COV_list4dataset2nonOrf ninein like NLP yes 24 4224 1408 0.45757 1.05338 0.2658 0.581 2.0207e-05 0.000518646333333333 1.5834e-05 0.00051869125 0.00024343 0.00624803666666667 6.599 2.58396 12 703_D_0.929,708_R_0.943,802_G_0.942,829_R_0.939,848_R_0.902,871_P_0.938,875_G_0.920,903_A_0.949,938_L_0.942,981_R_0.908,1111_A_0.938,1185_S_0.953 NA NA NA NA NA NA NA NA NA NA NA NA NA NINL ENSG00000101004.14 ENST00000422516.5 13 1034 96.03481625 0.288848328 0.1913 0.51021 0.51842 -6660.290583 -6657.570979 0.065900846 NA NA NA NINL 0.613096766 1 NA NA NA 2832 944 0.53526 0.53112 0.1438 0.2686 3.1176e-08 3.00069e-06 1.1293e-07 1.35029125e-05 2.1842e-07 2.1022925e-05 12.273 3.41291 9 568_S_0.942,603_A_0.911,618_T_0.953,625_L_0.992,632_P_0.926,654_A_0.950,687_G_0.992,713_L_0.956,792_S_0.996 0.520884861441766 Y 0.000243430762205573 0 0.520884861441766 Y 1.34977304698138e-05 1 1185 0.520884861441766 Y 0.00206833277894932 0 0.520884861441766 Y 1.14561731602127e-05 0 0.520884861441766 Y 1e-04 21 273, 630, 780, 851, 862, 871, 874, 875, 898, 903, 938, 965, 984, 985, 1037, 1072, 1079, 1184, 1185, 1186, 1214 NINL_sequences_filtered_longestORFs_mafft_mincov_prank NINL_all 2604 23 0.427852487352 0.390 N 0.1028 40 340, 592, 637, 639, 644, 692, 840, 1042, 1073, 1096, 1643, 1674, 1687, 1751, 1756, 1782, 1793, 1801, 1806, 1817, 1823, 1837, 1842, 1853, 1898, 1907, 1924, 1977, 2017, 2028, 2118, 2155, 2166, 2220, 2230, 2237, 2247, 2463, 2485, 2536 N 0.9999971376751129 0 na Y 0.031103287956552407 0 N 0.9990004998331715 0 na Y 0.0004429737698240615 0
+NLRX1 NLRX1 NLRX1 orf9c list24_COV_list2nonOrf NLR family member X1 CLR11.3|DLNB26|NOD26|NOD5|NOD9 no 24 2955 985 0.17885 0.73839 0.1083 0.6055 0.23405 0.630134615384615 0.046322 0.216022108433735 0.50568 1 8.98 1.3302 1 143_Q_0.900 NLRX1 ENSMLUG00000000471.2 ENSMLUT00000000472.2 10 976 88.7295082 0.119503218 0.5895 1.51145 1.51495 -8200.057676 -8199.671454 0.679619633 NA NA NA NLRX1 ENSG00000160703.15 ENST00000409265.8 17 976 95.79918033 0.175988852 0.2133 0.5628 0.58202 -6658.028812 -6655.525082 0.081779392 NA NA NA NLRX1 1 1 NA NA NA 2133 711 0.16764 0.40048 0.0569 0.3397 0.24233 0.992521808510638 0.22746 1 0.50582 1 NA NA NA 0.215954356109687 N 0.756141311724371 NA 0.215954356109687 N 0.136145379128732 NA 0.215954356109687 N 0.988982152482412 NA 0.215954356109687 N 0.194872382387887 NA 0.215954356109687 N 0.1214 9 19, 22, 37, 40, 64, 143, 330, 748, 831 NLRX1_sequences_filtered_longestORFs_mafft_mincov_prank NLRX1_all 1342 24 0.191851581154 0.158 N 0.1076 14 18, 19, 20, 22, 40, 61, 64, 66, 71, 151, 291, 343, 1149, 1159 N 0.9999996792794777 0 na Y 0.016986494811331982 5 5, 64, 68, 151, 341 N 0.9960079893431798 0 na Y 0.0033193045197521024 0
+NOL10 NOL10 NOL10 nsp8 list24_COV_list2nonOrf nucleolar protein 10 PQBP5 no 24 2067 689 0.09925 0.40974 0.0388 0.3911 1 1 1 1 1 1 NA NA NA NOL10 ENSMLUG00000012309.2 ENSMLUT00000012324.2 7 689 91.5820029 0.04711 0.5473 0.67759 0.67845 -4316.213081 -4314.723413 0.225447492 NA NA NA NOL10 ENSG00000115761.15 ENST00000538384.5 16 663 90.79939668 0.079673673 0.1878 0.34335 0.3476 -3573.778847 -3573.123958 0.519499724 NA NA NA NOL10 0.945985014 1 NA NA NA 1728 576 0.1001 0.26531 0.0261 0.2603 1 1 1 1 1 1 NA NA NA 0.103316490134721 N 0.999999000000162 NA 0.103316490134721 N 0.999959000840251 NA 0.103316490134721 N 0.99999768041376 NA 0.103316490134721 N 0.336650626173973 NA 0.103316490134721 Y 0 3 35, 37, 513 NOL10_sequences_filtered_longestORFs_mafft_mincov_prank NOL10_all 939 24 0.078755544009 0.073 Y 0.0000 2 353, 403 N 0.9999863641398594 0 na N 0.9999998543389772 0 na N 1.0 0 na N 0.9970044955036704 0 na
+NPC2 NPC2 NPC2 orf8 list23_COV_list1orf NPC intracellular cholesterol transporter 2 EDDM1|HE1 no 24 465 155 0.28349 0.66431 0.128 0.4516 0.073109 0.29943579787234 0.12039 0.411370796460177 0.20056 0.908418823529412 16.901 1.89121 3 7_T_0.975,12_A_0.902,134_R_0.915 NPC2 ENSMLUG00000004558.2 ENSMLUT00000004553.2 8 188 80.31914894 0.409691319 0.3524 1.11719 1.11731 -1372.452736 -1372.452748 0.999988 NA NA NA NPC2 ENSG00000119655.10 ENST00000555592.1 19 122 100 0.109616622 0.2467 0.53262 0.57178 -845.865194 -844.02272 0.158424997 NA NA NA NPC2 1 1 NA NA NA 363 121 0.33817 0.51879 0.1093 0.3233 0.00058009 0.01212255 0.002644 0.0502846666666667 0.0026863 0.0568685526315789 12.619 3.38544 4 3_T_0.996,56_V_0.961,103_R_0.971,117_Q_0.953 0.372609210786164 N 0.0792663165777696 NA 0.372609210786164 N 0.0789034757107342 NA 0.372609210786164 N 0.338306130075932 NA 0.372609210786164 Y 0.0153340042170064 24 2, 4, 134, 7, 136, 12, 13, 142, 15, 17, 149, 22, 23, 151, 25, 45, 55, 65, 75, 79, 82, 83, 90, 97 0.372609210786164 Y 0.0033 5 7, 25, 82, 134, 142 NPC2_sequences_filtered_longestORFs_mafft_mincov_prank NPC2_all 780 24 0.508028059871 0.457 Y 0.0001 10 25, 39, 65, 82, 83, 129, 138, 146, 544, 719 N 0.2328510019315863 0 na N 0.057719371839172945 0 na Y 0.004719747389456752 0 Y 0.001593217057936894 3 65, 138, 545
+NPTX1 NPTX1 NPTX1 orf8 list23_COV_list1orf neuronal pentraxin 1 NP1 no 23 1299 433 0.01642 0.33748 0.0122 0.7454 1 1 1 1 0.99999 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NPTX1 ENSG00000171246.5 ENST00000306773.4 14 433 75.75057737 0.036985109 0.1275 0.23805 0.23805 -1667.229725 -1667.230101 0.999624071 NA NA NA NA NA NA NA NA 813 271 0.0123 0.14899 0.0045 0.3654 1 1 1 1 0.99926 1 NA NA NA 0.0294833059738728 N 1 NA 0.0294833059738728 N 0.99870284203796 NA 0.0294833059738728 N 0.999999495179636 NA 0.0294833059738728 N 0.685513533494206 NA 0.0294833059738728 N 0.2669 1 246 NPTX1_sequences_filtered_longestORFs_mafft_mincov_prank NPTX1_all 1410 22 0.026765310295 0.025 N 0.8825 4 1047, 1059, 1266, 1356 N 0.999999757519647 0 na N 0.9987352907898548 0 na N 0.9445940693675817 0 na N 0.9990004998331715 0 na
+NUP210 NUP210 NUP210 nsp4 list26_COV_list4dataset2nonOrf nucleoporin 210 GP210|POM210 no 24 5664 1888 0.11937 0.66487 0.0766 0.642 0.011543 0.081942 0.014496 0.09966 1 1 0.115 6.99199 5 915_R_0.990,930_A_0.905,1445_V_0.951,1550_V_0.929,1755_A_0.900 NUP210 ENSMLUG00000008874.2 ENSMLUT00000008938.2 10 1835 98.03814714 0.163033289 0.4134 1.45189 1.46856 -17586.2163 -17576.58963 6.59e-05 -17581.93687 0.001074556 NA NUP210 ENSG00000132182.11 ENST00000254508.6 17 1888 89.77754237 0.12209371 0.221 0.54216 0.54545 -11598.07978 -11595.38623 0.067640051 NA NA NA NUP210 0.735410013 1 NA NA NA 4107 1369 0.11458 0.31591 0.036 0.3142 1 1 1 1 1 1 NA NA NA 0.161433100039414 na NA NA 0.161433100039414 na NA NA 0.161433100039414 N 0.999998458807846 NA 0.161433100039414 Y 0.00212443853341608 1 915 0.161433100039414 na NA 0 NUP210_sequences_filtered_longestORFs_mafft_mincov_prank NUP210_all 3638 21 0.168684208369 0.126 N 0.2227 16 165, 377, 603, 682, 754, 911, 932, 2372, 2434, 2715, 2778, 2930, 3035, 3053, 3118, 3466 N 0.9999984922953896 0 na Y 0.000560055585517515 1 1061 N nan 0 na Y 2.1210801528009748e-05 1 1061
+NUP214 NUP214 NUP214 nsp9 list24_COV_list2nonOrf nucleoporin 214 CAIN|CAN no 24 6297 2099 0.28183 0.55213 0.1001 0.355 0.24047 0.641787248322148 0.29089 0.7281 0.6197 1 NA NA NA NUP214 ENSMLUG00000004875.2 ENSMLUT00000004890.2 9 2067 91.43686502 0.183714759 0.4956 1.60598 1.85946 -19714.55251 -19660.54198 3.5e-24 -19710.52044 1.56e-23 9 Q1665, G1682, Q1683, Q1684, L1685, T1281, V1675, S1678, A1679 NUP214 ENSG00000126883.16 ENST00000451030.5 15 1520 92.96052632 0.285515801 0.1529 0.50526 0.50819 -9870.347356 -9867.143151 0.040591159 -9870.284533 0.01219178 NA NUP214 1 1 NA NA NA 5196 1732 0.35056 0.35951 0.076 0.2168 0.84904 1 0.86724 1 0.98284 1 NA NA NA 0.277246434091473 N 0.61969677076016 NA 0.277246434091473 N 0.29111846454357 NA 0.277246434091473 N 0.999024744999802 NA 0.277246434091473 N 0.407998669980893 NA 0.277246434091473 N 0.8322 10 449, 632, 633, 1138, 1186, 1245, 1255, 1409, 1411, 1660 NUP214_sequences_filtered_longestORFs_mafft_mincov_prank NUP214_all 3953 24 0.292847695065 0.296 N 0.8924 19 190, 753, 754, 1093, 1207, 1303, 1351, 1440, 1479, 1585, 1747, 1764, 1813, 1871, 1981, 2016, 2066, 2081, 2489 N 0.9999922165455296 0 na Y 1.1777447939908644e-06 1 753 Y 0.00045875236651099906 0 na na 0 na
+NUP54 NUP54 NUP54 nsp9 list24_COV_list2nonOrf nucleoporin 54 - no 24 1530 510 0.03565 0.21623 0.009 0.2532 1 1 0.97422 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NUP54 ENSG00000138750.14 ENST00000513352.1 19 85 96.47058824 0.108626324 0.0807 0.15464 0.18092 -394.365771 -392.927146 0.237253758 NA NA NA NUP54 1 1 NA NA NA 1380 460 0.04403 0.15203 0.0079 0.1796 1 1 1 1 0.9998 1 NA NA NA 0.0417239883603073 N 1 NA 0.0417239883603073 N 0.903079219660178 NA 0.0417239883603073 N 0.999997326667134 NA 0.0417239883603073 N 0.524636654493616 NA 0.0417239883603073 N 1 0 NUP54_sequences_filtered_longestORFs_mafft_mincov_prank NUP54_all 1305 24 0.074379806320 0.066 N 1.0000 4 22, 796, 857, 978 N 0.9643347227277823 0 na N 0.08374034939195321 0 na N 1.0 0 na N 0.40171998009784604 0 na
+NUP62 NUP62 NUP62 nsp9 list24_COV_list2nonOrf nucleoporin 62 IBSN|SNDI|p62 no 24 1599 533 0.18558 0.8424 0.1273 0.6861 0.12962 0.437751754385965 0.1473 0.4725875 0.52476 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 996 332 0.19473 0.37067 0.061 0.3134 0.36086 1 0.49174 1 0.6569 1 NA NA NA 0.235649425288143 N 0.999943001624272 NA 0.235649425288143 N 0.138772829909784 NA 0.235649425288143 N 0.102080073155142 NA 0.235649425288143 Y 0.018889569604118 1 288 0.235649425288143 Y 1e-04 7 147, 161, 186, 194, 250, 274, 288 NUP62_sequences_filtered_longestORFs_mafft_mincov_prank NUP62_all 732 24 0.260507976485 0.210 Y 0.0000 5 165, 234, 299, 306, 552 N 0.9999998184657835 0 na N 0.8330241635844272 0 na N 0.9990004998331715 0 na N 0.4766370400829789 0 na
+NUP88 NUP88 NUP88 nsp9 list24_COV_list2nonOrf nucleoporin 88 - no 24 2232 744 0.19123 0.48813 0.0732 0.3826 0.061255 0.259155769230769 0.052061 0.235805705882353 0.25163 1 0.57 4.54814 0 noneOver_0.9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NUP88 0.811881094 1 NA NA NA 1824 608 0.1829 0.32802 0.0493 0.2694 1 1 1 1 0.99981 1 NA NA NA 0.20601208408508 N 0.251621325049329 NA 0.20601208408508 Y 0.0495026042341809 0 0.20601208408508 N 0.529757300383224 NA 0.20601208408508 N 0.133083639109216 NA 0.20601208408508 N 0.9852 2 9, 645 NUP88_sequences_filtered_longestORFs_mafft_mincov_prank NUP88_all 893 24 0.171479668096 0.169 N 0.6253 9 42, 156, 251, 293, 644, 696, 779, 812, 876 N 0.9999992328360564 0 na N 0.13278352449163852 0 na N 1.0 0 na N 0.2602792983786746 0 na
+NUP98 NUP98 NUP98 orf6 list23_COV_list1orf nucleoporin 98 ADIR2|NUP196|NUP96 no 36 5409 1803 0.17017 0.44274 0.0618 0.3631 1 1 0.034521 0.179862635135135 1 1 0.05 999 0 noneOver_0.9 NUP98 ENSMLUG00000013592.2 ENSMLUT00000013607.2 10 1801 98.33425875 0.118413081 0.2018 0.53296 0.53296 -12054.95795 -12054.95796 0.999997 NA NA NA NUP98 ENSG00000110713.15 ENST00000359171.8 11 1818 99.17491749 0.154326086 0.1011 0.215 0.21521 -9759.166224 -9758.903985 0.769327133 NA NA NA NUP98 1 1 NA NA NA 4641 1547 0.1932 0.30858 0.0477 0.2471 1 1 1 1 1 1 NA NA NA 0.177210908109437 N 0.999985000112878 NA 0.177210908109437 N 0.982199337384152 NA 0.177210908109437 N 0.999979324690691 NA 0.177210908109437 N 0.0956429034718692 NA 0.177210908109437 N 0.156 8 9, 153, 775, 1024, 1226, 1279, 1297, 1441 NUP98_sequences_filtered_longestORFs_mafft_mincov_prank NUP98_all 5910 34 na na Y 0.0000 18 22, 132, 165, 331, 1153, 1154, 1487, 1507, 1913, 2035, 2051, 2082, 2163, 2598, 2599, 2839, 3514, 4112 na na 0 na na na 0 na na na 0 na na na 0 na
+NUPL1 NUP58 NUPL1 nsp9 list24_COV_list2nonOrf spartin SPG20|TAHCCP1 no 24 1803 601 0.11458 0.28658 0.03 0.2614 0.19242 0.561057894736842 0.34495 0.804883333333333 0.41534 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NUPL1 1 1 NA NA NA 1566 522 0.11964 0.18355 0.0208 0.1736 1 1 1 1 0.99977 1 NA NA NA 0.119682270855201 na NA NA 0.119682270855201 na NA NA 0.119682270855201 N 0.685955178957965 NA 0.119682270855201 N 0.695513823058955 NA 0.119682270855201 na NA 0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
+NUTF2 NUTF2 NUTF2 nsp15 list26_COV_list4dataset2nonOrf nuclear transport factor 2 NTF-2|NTF2|PP15 no 23 384 128 0.0166 0.17861 0.0036 0.2174 1 1 1 1 0.99982 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 324 108 1e-04 0.05343 0 0.0754 1 1 1 1 0.99983 1 NA NA NA 0.0195720772870751 N 0.999820016199028 NA 0.0195720772870751 N 0.999821016019541 NA 0.0195720772870751 N 0.999999968996577 NA 0.0195720772870751 N 0.99999489177148 NA 0.0195720772870751 N 0.4991 0 NUTF2_sequences_filtered_longestORFs_mafft_mincov_prank NUTF2_all 493 24 0.351664349637 0.321 Y 0.0291 8 280, 282, 284, 285, 324, 339, 425, 473 N 0.9208057350375947 0 na N 0.9995795781363376 0 na N 0.9579113900669156 0 na N 0.9880717128617615 0 na
+OS9 OS9 OS9 orf8 list23_COV_list1orf OS9, endoplasmic reticulum lectin ERLEC2|OS-9 no 24 2016 672 0.17831 0.39211 0.0555 0.3112 0.376 0.851529411764706 0.528 1 0.72735 1 NA NA NA OS9 ENSMLUG00000005905.2 ENSMLUT00000005907.2 12 668 95.20958084 0.19047821 0.2765 0.91422 0.92454 -5483.73567 -5480.367642 0.034457521 -5483.01591 0.021367878 2 L18, S348 OS9 ENSG00000135506.15 ENST00000552285.5 19 613 93.31158238 0.129807199 0.1537 0.40194 0.40256 -3659.214703 -3658.398313 0.442024486 NA NA NA OS9 0.011396312 0.286659061 NA NA NA 1626 542 0.21531 0.25539 0.0419 0.1948 1 1 1 1 1 1 NA NA NA 0.196223383374366 N 0.727337989196178 NA 0.196223383374366 N 0.527848483249697 NA 0.196223383374366 N 0.935557880793177 NA 0.196223383374366 N 0.448739927908451 NA 0.196223383374366 N 1 0 OS9_sequences_filtered_longestORFs_mafft_mincov_prank OS9_all 2383 24 0.192502708990 0.179 N 0.1109 8 7, 53, 634, 675, 1505, 1514, 1853, 2349 N 0.9999995736071469 0 na N 0.1173463127809913 0 na N 1.0 0 na na na 0 na
+PABPC1 PABPC1 PABPC1 N list26_COV_list4dataset2nonOrf poly(A) binding protein cytoplasmic 1 PAB1|PABP|PABP1|PABPC2|PABPL1 no 22 1920 640 0.25446 0.48967 0.0895 0.3517 0.029875 0.157559931506849 0.060395 0.267265229885057 0.13375 0.686583333333333 0.624 7.12936 0 noneOver_0.9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1467 489 0.26057 0.3403 0.0636 0.2441 0.76986 1 0.93921 1 0.97767 1 NA NA NA 0.273125840611378 N 0.133761756232925 NA 0.273125840611378 N 0.0599846849605211 NA 0.273125840611378 N 0.223549279595684 NA 0.273125840611378 N 0.0906015157838811 NA 0.273125840611378 Y 1e-04 4 52, 55, 57, 464 PABPC1_sequences_filtered_longestORFs_D976gp1_prank PABPC1_976-1 755 14 0.533694474655 0.478 N 1.0000 0 na N 0.9994741259976754 0 na N 0.9826334675013463 0 na N 0.9665715046374047 0 na N 0.9380049995304428 0 na
+PABPC4 PABPC4 PABPC4 N list26_COV_list4dataset2nonOrf poly(A) binding protein cytoplasmic 4 APP-1|APP1|PABP4|iPABP no 24 1983 661 0.02748 0.22293 0.0065 0.2366 1 1 0.28405 0.724233443708609 1 1 NA NA NA PABPC4 ENSMLUG00000012068.2 ENSMLUT00000012071.2 4 616 88.7987013 0.152907163 4.0876 3.43137 3.54991 -5318.31677 -5316.135205 0.112864759 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PABPC4 0.650870822 1 NA NA NA 1620 540 0.03302 0.14794 0.0053 0.1593 0.98714 1 0.6042 1 0.99987 1 NA NA NA 0.0285199761878767 N 0.999994000017788 NA 0.0285199761878767 N 0.197904042420655 NA 0.0285199761878767 N 0.99999999892816 NA 0.0285199761878767 Y 0.0320506443618164 2 227, 461 0.0285199761878767 N 1 0 PABPC4_sequences_filtered_longestORFs_D1202gp2_prank PABPC4_1202-2 1303 24 0.086971224325 0.091 Y 0.0003 6 144, 690, 746, 770, 903, 916 N 0.9999988697124558 0 na N 0.1069597779776388 0 na Y 0.016490018838369237 0 N 0.6319152448996017 0 na
+PCNT PCNT PCNT nsp13 list26_COV_list4dataset2nonOrf pericentrin KEN|MOPD2|PCN|PCNT2|PCNTB|PCTN2|SCKL4 yes 21 10074 3358 0.44695 1.04111 0.2557 0.5721 1.4068e-29 5.41618e-27 4.0744e-33 1.568644e-30 6.8784e-28 2.648184e-25 5.984 3.50299 36 77_D_0.956,109_V_0.951,113_N_0.905,122_M_0.986,129_P_0.941,133_H_0.929,138_V_0.958,155_P_0.974,161_M_0.972,164_V_0.976,165_S_0.931,172_P_0.921,178_M_0.991,181_I_0.918,185_Q_0.972,189_R_0.984,202_R_0.953,207_I_0.921,217_M_0.931,599_R_0.916,638_C_0.980,650_R_0.977,769_M_0.943,1016_W_0.904,1088_R_0.991,1825_R_0.961,1935_W_0.905,1967_R_0.923,1983_R_0.968,2039_V_0.964,2136_I_0.973,2140_I_0.992,2215_R_0.988,2298_A_0.907,2377_Q_0.986,2516_R_0.935 NA NA NA NA NA NA NA NA NA NA NA NA NA PCNT ENSG00000160299.16 ENST00000418394.1 18 228 96.92982456 0.251847598 0.2741 0.75182 0.75645 -1816.308178 -1815.640662 0.512981242 NA NA NA NA NA NA NA NA 6678 2226 0.41957 0.53703 0.1291 0.3076 9.4062e-20 3.621387e-17 1.0178e-18 3.91853e-16 1.6815e-18 6.473775e-16 3.035 6.7467 23 3_V_0.960,38_T_0.987,71_Q_0.927,75_N_0.989,78_P_0.987,82_M_1.000,91_M_0.998,100_I_0.993,104_Q_0.997,107_M_0.983,112_I_0.991,115_I_0.993,119_P_0.900,123_M_0.994,438_S_0.959,1128_I_0.991,1463_S_0.956,1487_T_0.946,1542_P_0.960,1615_I_0.978,1728_T_0.940,1759_A_0.939,2216_T_0.954 0.457479024574215 Y 6.88085284184514e-28 14 122, 155, 161, 164, 178, 185, 189, 638, 650, 1088, 2136, 2140, 2215, 2377 0.457479024574215 Y 4.16647380930475e-33 21 77, 109, 122, 138, 155, 161, 164, 178, 185, 189, 202, 638, 650, 1088, 1825, 1983, 2039, 2136, 2140, 2215, 2377 0.457479024574215 Y 1.58445729751155e-15 2 1088, 178 0.457479024574215 Y 3.99401069149348e-21 17 1088, 161, 769, 164, 2215, 2377, 77, 1935, 178, 2066, 1016, 185, 122, 2136, 2140, 189, 638 0.457479024574215 Y 0 69 51, 53, 57, 58, 73, 77, 85, 90, 107, 108, 109, 125, 128, 129, 133, 138, 151, 155, 160, 164, 165, 181, 182, 184, 185, 189, 198, 202, 207, 210, 211, 226, 426, 503, 596, 599, 638, 650, 680, 1016, 1049, 1051, 1088, 1143, 1220, 1435, 1562, 1610, 1706, 1886, 1927, 1935, 1967, 2114, 2136, 2179, 2215, 2249, 2255, 2298, 2315, 2377, 2388, 2396, 2501, 2570, 3245, 3253, 3256 PCNT_sequences_filtered_longestORFs_mafft_mincov_prank PCNT_all 4529 18 0.378148780950 0.371 Y 0.0215 81 20, 83, 91, 96, 565, 588, 601, 611, 619, 694, 710, 727, 796, 803, 1015, 1092, 1190, 1241, 1255, 1278, 1316, 1336, 1358, 1401, 1459, 1482, 1564, 1614, 1636, 1637, 1647, 1649, 1661, 1667, 1685, 1691, 1692, 1698, 1718, 1735, 1779, 1852, 1908, 2013, 2014, 2111, 2113, 2561, 2564, 2703, 2805, 2899, 2921, 2963, 2970, 2999, 3001, 3007, 3011, 3040, 3084, 3102, 3140, 3151, 3162, 3245, 3271, 3349, 3412, 3424, 3602, 3881, 3894, 3914, 3918, 4023, 4122, 4219, 4269, 4392, 4434 N 0.5482488609326766 0 na Y 7.094956322513417e-06 4 1614, 2921, 3000, 3162 Y 7.702235088396207e-06 0 Y 8.241573644122765e-14 3 611, 3000, 3162
+PCSK6 PCSK6 PCSK6 orf8 list25_COV_list3dataset2orf proprotein convertase subtilisin/kexin type 6 PACE4|SPC4 no 24 2940 980 0.08851 0.61083 0.0574 0.6487 0.044184 0.2126355 0.030184 0.165459097222222 0.30045 1 0.343 4.71921 3 22_-_0.979,30_-_0.925,717_N_0.941 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PCSK6 1 1 NA NA NA 1899 633 0.11842 0.25851 0.0308 0.26 0.40439 1 0.70637 1 0.86169 1 NA NA NA 0.108910539759973 na NA NA 0.108910539759973 na NA NA 0.108910539759973 N 0.159492833833456 NA 0.108910539759973 Y 0.00245212237278693 1 22 0.108910539759973 N 0.1028 5 188, 546, 717, 751, 940 PCSK6_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank PCSK6_all_part1 2728 24 na na na na 0 na na na 0 na na na 0 na na na 0 na na na 0 na
+PDE4DIP PDE4DIP PDE4DIP nsp13 list26_COV_list4dataset2nonOrf phosphodiesterase 4D interacting protein CMYA2|MMGL yes 21 7119 2373 0.42718 0.57408 0.1357 0.3178 0.00025385 0.00407217708333333 0.0011533 0.015857875 0.001219 0.020405 17.329 1.85569 47 5_-_0.901,7_-_0.905,9_-_0.950,194_Q_0.912,207_T_0.957,214_M_0.938,333_S_0.902,419_R_0.953,421_R_0.977,571_H_0.979,664_E_0.971,690_L_0.914,694_G_0.953,706_T_0.954,736_V_0.952,925_S_0.945,976_V_0.951,1000_M_0.928,1095_A_0.951,1105_Q_0.945,1180_P_0.981,1193_V_0.941,1208_G_0.902,1212_A_0.976,1313_V_0.953,1324_R_0.950,1347_E_0.927,1358_L_0.907,1413_F_0.903,1637_H_0.945,1782_D_0.900,1783_S_0.904,1819_M_0.937,1936_T_0.974,2059_R_0.916,2097_V_0.957,2117_S_0.907,2147_T_0.976,2166_V_0.952,2170_P_0.900,2205_A_0.989,2211_V_0.954,2235_L_0.915,2241_H_0.949,2244_Q_0.946,2258_A_0.957,2366_F_0.961 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6063 2021 0.4158 0.41454 0.0978 0.2353 0.0012121 0.0202895 0.0031858 0.0533275217391304 0.0052888 0.092554 18.141 1.90856 14 8_-_0.942,175_T_0.947,593_G_0.940,602_T_0.942,626_V_0.941,791_S_0.932,935_A_0.940,1011_P_0.983,1122_V_0.942,1405_H_0.926,1665_R_0.915,1853_V_0.938,1892_V_0.944,2015_F_0.952 0.418543656780555 Y 0.00121907854085035 0 0.418543656780555 Y 0.000695654798387007 21 207, 419, 421, 571, 664, 694, 706, 736, 976, 1095, 1180, 1212, 1313, 1936, 2097, 2147, 2166, 2205, 2211, 2258, 2366 0.418543656780555 N 0.0980656237448514 NA 0.418543656780555 Y 0.000380090939546576 0 0.418543656780555 Y 0 20 3, 5, 7, 9, 341, 421, 772, 925, 927, 1105, 1180, 1192, 1358, 1816, 2090, 2141, 2153, 2205, 2332, 2366 PDE4DIP_sequences_filtered_longestORFs_mafft_mincov_prank PDE4DIP_all 6983 22 na na Y 0.0000 39 1600, 1988, 1995, 2013, 2083, 2115, 2195, 2273, 2413, 2464, 2468, 2478, 2479, 2484, 2501, 2639, 2734, 2736, 2960, 3042, 3052, 3125, 3127, 3136, 3213, 3276, 3289, 3309, 4254, 4423, 4466, 4488, 4581, 4651, 4656, 4670, 4687, 4986, 5118 na na 0 na na na 0 na na na 0 na na na 0 na
+PDZD11 PDZD11 PDZD11 nsp12 list26_COV_list4dataset2nonOrf PDZ domain containing 11 AIPP1|PDZK11|PISP no 23 423 141 1e-04 0.22866 0 0.2764 1 1 1 1 1 1 NA NA NA PDZD11 ENSMLUG00000011031.2 ENSMLUT00000011024.2 5 141 75.17730496 0.24885785 0.2315 0.56966 0.56966 -679.731552 -679.731599 0.999953001 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PDZD11 0.981912255 1 NA NA NA 375 125 1e-04 0.1789 0 0.2204 1 1 1 1 1 1 NA NA NA 0.001 N 0.999390186012238 NA 0.001 N 0.999389186622554 NA 0.001 N 0.999999999972488 NA 0.001 N 0.999992654064651 NA 0.001 N 1 0 PDZD11_sequences_filtered_longestORFs_mafft_mincov_prank PDZD11_all 482 24 0.165348956755 0.193 Y 0.0000 2 435, 445 N 0.7082290406313829 0 na N 0.3351684111209584 0 na N 0.7363866194560706 0 na N 0.4041375454214722 0 na
+PIGO PIGO PIGO orf9c list24_COV_list2nonOrf phosphatidylinositol glycan anchor biosynthesis class O HPMRS2 no 24 3276 1092 0.27487 0.43671 0.0783 0.2848 0.24174 0.641787248322148 0.38737 0.867078197674419 0.5056 1 NA NA NA PIGO ENSMLUG00000006159.2 ENSMLUT00000006157.2 15 1097 96.9006381 0.18586015 0.2616 1.19819 1.19982 -10775.27331 -10774.63539 0.52838822 NA NA NA PIGO ENSG00000165282.13 ENST00000361778.6 19 673 98.36552749 0.188942514 0.1108 0.32465 0.32617 -4024.759763 -4024.37837 0.682909453 NA NA NA PIGO 1 1 NA NA NA 2766 922 0.28573 0.30907 0.0574 0.2009 0.63643 1 0.80664 1 0.89465 1 NA NA NA 0.263967111123942 N 0.505602242921867 NA 0.263967111123942 N 0.412683220876724 NA 0.263967111123942 N 0.707926619581723 NA 0.263967111123942 N 0.356805653183503 NA 0.263967111123942 N 1 1 647 PIGO_sequences_filtered_longestORFs_mafft_mincov_prank PIGO_all 1608 24 0.236723326058 0.264 N 1.0000 14 192, 240, 428, 515, 555, 665, 695, 702, 711, 750, 820, 935, 944, 1408 N 0.999996608534569 0 na N 0.11394615645405819 0 na N 0.14646042844749838 0 na Y 0.0465606274262097 0
+PIGS PIGS PIGS orf9c list26_COV_list4dataset2nonOrf phosphatidylinositol glycan anchor biosynthesis class S - no 24 1674 558 0.13699 0.43919 0.0527 0.3848 1 1 1 1 1 1 NA NA NA PIGS ENSMLUG00000012363.2 ENSMLUT00000012364.2 14 556 95.14388489 0.113059233 0.3105 1.08827 1.09231 -4851.689763 -4851.470833 0.803377953 NA NA NA PIGS ENSG00000087111.20 ENST00000268758.13 10 42 88.0952381 0.238660577 0.1342 0.33801 0.4123 -201.283434 -200.746994 0.584826533 NA NA NA PIGS 1 1 NA NA NA 1353 451 0.11267 0.30383 0.0307 0.2727 0.061489 0.374941875 1 1 1 1 0.001 1 0 noneOver_0.9 0.139363935010491 N 1 NA 0.139363935010491 N 0.999973000364451 NA 0.139363935010491 N 0.999998991041193 NA 0.139363935010491 N 0.999999999880401 NA 0.139363935010491 N 1 0 PIGS_sequences_filtered_longestORFs_mafft_mincov_prank PIGS_all 676 24 0.138568117539 0.133 N 1.0000 1 637 N 0.9999997357436208 0 na N 0.999846628686188 0 na N 1.0 0 na N 0.9990004998331715 0 na
+PITRM1 PITRM1 PITRM1 M list24_COV_list2nonOrf pitrilysin metallopeptidase 1 MP1|PreP no 24 3117 1039 0.16967 0.92013 0.1271 0.7489 0.24587 0.641787248322148 0.12074 0.411370796460177 1 1 NA NA NA PITRM1 ENSMLUG00000001788.2 ENSMLUT00000001807.2 4 1025 93.07317073 0.225980009 0.3712 0.48315 0.89431 -5525.955326 -5511.092897 3.51e-07 -5525.683766 6.59e-08 5 S104, Q171, S172, L173, G174 PITRM1 ENSG00000107959.15 ENST00000380989.6 8 1039 95.76515881 0.107752447 0.1232 0.2203 0.22042 -5308.90701 -5308.827802 0.923847744 NA NA NA PITRM1 1 1 NA NA NA 2160 720 0.18605 0.48445 0.0722 0.3881 1 1 1 1 1 1 NA NA NA 0.176698611899062 N 0.99999900000198 NA 0.176698611899062 N 0.106303613584765 NA 0.176698611899062 N 0.707457159506376 NA 0.176698611899062 Y 0.011797966096874 1 11 0.176698611899062 Y 0 5 56, 296, 485, 587, 821 PITRM1_sequences_filtered_longestORFs_mafft_mincov_prank PITRM1_all 2828 24 0.129790611586 0.139 Y 0.0000 24 117, 123, 825, 837, 914, 938, 964, 1162, 1207, 1215, 1218, 1260, 1305, 1307, 1357, 1372, 1455, 1474, 2213, 2333, 2359, 2377, 2662, 2809 N 0.9999995957969894 0 na N 0.4076210903185358 0 na Y 9.157802140678478e-13 0 Y 0.0011004897180721745 1 119
+PKP2 PKP2 PKP2 nsp1 list24_COV_list2nonOrf plakophilin 2 ARVD9 no 24 2655 885 0.15795 0.58899 0.0811 0.5133 0.71917 1 1 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PKP2 0.91996417 1 NA NA NA 1896 632 0.17784 0.33125 0.0514 0.2891 0.70539 1 0.85457 1 0.93165 1 NA NA NA 0.176358422687361 N 1 NA 0.176358422687361 N 0.901114453526596 NA 0.176358422687361 N 0.999997264220032 NA 0.176358422687361 N 0.068211172416037 NA 0.176358422687361 Y 0 6 76, 77, 81, 82, 266, 293 PKP2_sequences_filtered_longestORFs_mafft_mincov_prank PKP2_all 1127 22 0.160659314869 0.144 Y 0.0000 6 76, 77, 293, 723, 990, 1033 N 0.9999995148865577 0 na N 0.9998626427515777 0 na N 1.0 0 na N 1.0 0 na
+PLAT PLAT PLAT orf8 list25_COV_list3dataset2orf plasminogen activator, tissue type T-PA|TPA no 23 1692 564 0.16564 0.73992 0.1154 0.6966 0.075208 0.301615416666667 0.0249 0.147484615384615 0.28123 1 5.053 1.97012 1 21_S_0.930 PLAT ENSMLUG00000002013.2 ENSMLUT00000002012.2 11 565 98.9380531 0.230998728 0.4105 1.29381 1.29504 -5666.617304 -5666.585307 0.968509488 NA NA NA PLAT ENSG00000104368.17 ENST00000521694.1 19 157 98.72611465 0.161425106 0.3466 0.85212 0.86128 -1242.278572 -1241.57666 0.49563674 NA NA NA PLAT 0.037451878 0.564196083 NA NA NA 1119 373 0.15523 0.33843 0.0533 0.3433 0.61478 1 0.60784 1 0.8822 1 NA NA NA 0.245674416191913 N 0.281201158278015 NA 0.245674416191913 Y 0.024693061147938 0 0.245674416191913 N 0.247989442634666 NA 0.245674416191913 Y 0.0153623328303278 7 456, 60, 558, 336, 21, 118, 540 0.245674416191913 Y 0.0185 3 372, 456, 483 PLAT_sequences_filtered_longestORFs_mafft_mincov_prank PLAT_all 682 23 0.210172895832 0.167 Y 0.0052 11 100, 179, 209, 339, 368, 429, 467, 534, 552, 659, 677 N 0.9999987954413861 0 na Y 0.04713155923609384 1 179 N 1.0 0 na Y 0.019177836800726614 0
+PLD3 PLD3 PLD3 orf8 list25_COV_list3dataset2orf phospholipase D family member 3 AD19|HU-K4|HUK4|SCA46 no 20 1473 491 0.10911 0.30464 0.0355 0.3251 0.85342 1 0.84194 1 1 1 NA NA NA PLD3 ENSMLUG00000007885.2 ENSMLUT00000007904.2 9 491 97.14867617 0.12395641 0.3311 0.89258 0.9003 -3676.996033 -3676.655612 0.711470731 NA NA NA PLD3 ENSG00000105223.19 ENST00000486134.1 17 71 95.77464789 0.119009659 0.3026 0.62383 0.65407 -454.915213 -454.783906 0.87694851 NA NA NA PLD3 0.988548595 1 NA NA NA 1107 369 0.06302 0.11948 0.0088 0.1399 0.3198 1 0.2859 1 0.60966 1 NA NA NA 0.170915311369884 N 1 NA 0.170915311369884 N 0.999964000648083 NA 0.170915311369884 N 0.634149668635658 NA 0.170915311369884 Y 0.00405720847957295 28 132, 268, 18, 19, 402, 149, 403, 169, 425, 175, 179, 183, 317, 63, 449, 324, 455, 463, 339, 478, 353, 482, 100, 358, 364, 371, 117, 374 0.170915311369884 N 0.987 0 PLD3_sequences_filtered_longestORFs_mafft_mincov_prank PLD3_all 523 24 0.106210003370 0.086 Y 0.0002 2 392, 483 N 0.999999916396522 0 na N 0.24372784306247056 0 na N 1.0 0 na N 0.22246177275023613 0 na
+PLEKHA5 PLEKHA5 PLEKHA5 nsp12 list24_COV_list2nonOrf pleckstrin homology domain containing A5 PEPP-2|PEPP2 no 21 3861 1287 0.16454 0.35837 0.0506 0.3074 0.054008 0.244624470588235 0.07154 0.286905208333333 0.15651 0.76076 4.723 2.05716 3 365_A_0.900,1205_Y_0.918,1223_P_0.911 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3297 1099 0.20673 0.25036 0.0417 0.2016 0.012349 0.121906794871795 0.043068 0.376845 0.043373 0.439436973684211 3.983 3.18246 6 316_A_0.963,344_N_0.944,763_I_0.950,1034_T_0.956,1035_Y_0.970,1049_P_0.967 0.194209005965801 N 0.156504111152828 NA 0.194209005965801 N 0.090846682594702 NA 0.194209005965801 N 0.15515752384363 NA 0.194209005965801 Y 0.00059283780198896 2 1204, 1223 0.194209005965801 N 0.2794 1 1166 PLEKHA5_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank PLEKHA5_all_part1 7595 21 na na na na 0 na na na 0 na na na 0 na na na 0 na na na 0 na
+PLEKHF2 PLEKHF2 PLEKHF2 orf8 list23_COV_list1orf pleckstrin homology and FYVE domain containing 2 EAPF|PHAFIN2|ZFYVE18 no 23 750 250 0.05521 0.27314 0.0177 0.3212 1 1 1 1 1 1 NA NA NA PLEKHF2 ENSMLUG00000012204.1 ENSMLUT00000012203.1 15 250 98.8 0.028280086 0.2888 0.70329 0.70206 -1812.683687 -1808.892994 0.022579949 -1810.294442 0.094094212 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 651 217 0.06581 0.21058 0.0162 0.2459 1 1 1 1 1 1 NA NA NA 0.0568294658981982 N 1 NA 0.0568294658981982 N 0.999902004801863 NA 0.0568294658981982 N 0.999998233768533 NA 0.0568294658981982 N 0.99257636416105 NA 0.0568294658981982 N 1 0 PLEKHF2_sequences_filtered_longestORFs_mafft_mincov_prank PLEKHF2_all 249 23 0.061384631227 0.056 N 1.0000 0 na N 0.9999960259305521 0 na N 0.1687570848704306 0 na N 1.0 0 na N 1.0 0 na
+PLOD2 PLOD2 PLOD2 orf8 list23_COV_list1orf procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 BRKS2|LH2|TLH no 23 2277 759 0.10317 0.29092 0.0301 0.2917 1 1 1 1 0.99093 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PLOD2 ENSG00000152952.11 ENST00000480704.1 16 99 96.96969697 0.363039363 0.213 0.6353 0.6353 -733.040385 -733.040386 0.999999 NA NA NA PLOD2 0.97110571 1 NA NA NA 2043 681 0.12848 0.21004 0.0248 0.1932 0.23467 0.983861290322581 0.459 1 0.52239 1 NA NA NA 0.123056233058136 N 0.989639048312294 NA 0.123056233058136 N 0.949290894447205 NA 0.123056233058136 N 0.999999042380754 NA 0.123056233058136 N 0.854767245988578 NA 0.123056233058136 N 1 1 2 PLOD2_sequences_filtered_longestORFs_mafft_mincov_prank PLOD2_all 910 24 0.112917586068 0.099 N 0.9684 8 2, 20, 277, 308, 355, 378, 570, 797 N 0.2972724503773207 0 na Y 0.00038959564441634636 1 20 Y 0.021004890235729264 0 Y 0.00012390443189924853 1 20
+PMPCA PMPCA PMPCA M list24_COV_list2nonOrf peptidase, mitochondrial processing alpha subunit Alpha-MPP|CLA1|CPD3|INPP5E|P-55|SCAR2 no 24 1578 526 0.09776 0.72842 0.069 0.7056 0.61863 1 0.28881 0.7281 0.84442 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PMPCA ENSG00000165688.11 ENST00000444897.2 8 272 93.01470588 0.24738248 0.1426 0.41602 0.44285 -1552.358247 -1551.276085 0.338862113 NA NA NA NA NA NA NA NA 1047 349 0.06969 0.4089 0.0306 0.4398 1 1 1 1 1 1 NA NA NA 0.111544502791805 na NA NA 0.111544502791805 na NA NA 0.111544502791805 N 0.549787483548668 NA 0.111544502791805 Y 9.41942085804687e-05 3 20, 421, 6 0.111544502791805 N 1 0 PMPCA_sequences_filtered_longestORFs_mafft_mincov_prank PMPCA_all 2133 22 0.090932719246 0.095 Y 0.0409 9 262, 311, 349, 962, 1067, 1330, 1890, 1908, 1922 N 0.9999997696359325 0 na Y 5.917791328477869e-05 3 297, 311, 1190 N 1.0 0 na N 0.053718383445887474 0 na
+PMPCB PMPCB PMPCB M list24_COV_list2nonOrf peptidase, mitochondrial processing beta subunit Beta-MPP|MPP11|MPPB|MPPP52|P-52 no 23 1473 491 0.17734 0.40849 0.0615 0.3469 0.73014 1 0.93474 1 0.99203 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PMPCB ENSG00000105819.13 ENST00000453466.1 18 120 85 0.213684658 0.3629 0.76883 0.80597 -813.913803 -808.924074 0.006807509 -813.840738 0.00171378 1 A110 NA NA NA NA NA 1266 422 0.19537 0.29376 0.0481 0.2462 0.4863 1 0.77581 1 0.8086 1 NA NA NA 0.202096335180247 N 0.993614474674446 NA 0.202096335180247 N 0.941569608501247 NA 0.202096335180247 N 0.999999327347949 NA 0.202096335180247 N 0.36806557933324 NA 0.202096335180247 N 0.5917 0 PMPCB_sequences_filtered_longestORFs_mafft_mincov_prank PMPCB_all 830 24 0.204359423038 0.177 Y 0.0004 7 99, 103, 125, 133, 148, 670, 678 N 0.18727413961788525 0 na Y 0.00017242828028838283 5 113, 116, 148, 670, 678 N 0.07699613909573662 0 na Y 0.011527728176241822 1 670
+POFUT1 POFUT1 POFUT1 orf8 list25_COV_list3dataset2orf protein O-fucosyltransferase 1 DDD2|FUT12|O-FUT|O-Fuc-T|O-FucT-1|OFUCT1 no 24 1167 389 0.10747 0.48828 0.0508 0.4726 1 1 1 1 1 1 NA NA NA POFUT1 ENSMLUG00000008418.2 ENSMLUT00000008424.2 12 392 97.70408163 0.184066525 0.359 1.28852 1.29612 -3796.585477 -3795.631984 0.385392494 NA NA NA POFUT1 ENSG00000101346.13 ENST00000375730.3 17 195 88.71794872 0.106511159 0.2531 0.37121 0.36961 -1023.094752 -1022.994131 0.904275688 NA NA NA POFUT1 1 1 NA NA NA 894 298 0.13903 0.24831 0.0312 0.2248 1 1 1 1 1 1 NA NA NA 0.135173552439624 N 1 NA 0.135173552439624 N 0.999958000881866 NA 0.135173552439624 N 0.999999297835321 NA 0.135173552439624 N 0.974966350453416 NA 0.135173552439624 N 0.6901 2 8, 10 POFUT1_sequences_filtered_longestORFs_mafft_mincov_prank POFUT1_all 777 24 0.134710840412 0.117 Y 0.0054 4 11, 19, 21, 529 N 0.9999998223093074 0 na N 0.23449724785509962 0 na N 1.0 0 na N 1.0 0 na
+POLA1 POLA1 POLA1 nsp1 list24_COV_list2nonOrf DNA polymerase alpha 1, catalytic subunit NSX|POLA|p180 yes 23 4407 1469 0.34634 0.34119 0.0746 0.2155 1.5891e-10 2.039345e-08 1.1774e-09 1.51099666666667e-07 1.2972e-09 1.66474e-07 0.426 17.73252 9 15_G_0.989,16_A_0.997,17_S_1.000,205_S_0.957,238_P_0.937,566_V_0.912,735_Q_0.954,1075_V_0.989,1099_N_0.925 POLA1 ENSMLUG00000004537.2 ENSMLUT00000004548.2 10 1350 93.85185185 0.188601927 0.2663 0.7851 0.80503 -9819.54088 -9806.381977 1.93e-06 -9818.83609 6.01e-07 3 P289, H243, V1073 POLA1 ENSG00000101868.10 ENST00000611764.1 15 1462 95.69083447 0.269632203 0.0987 0.25387 0.25688 -7874.115011 -7872.112305 0.134969561 NA NA NA POLA1 0.058773459 0.717665523 NA NA NA 3831 1277 0.38372 0.22477 0.0529 0.1378 2.2632e-08 2.90444e-06 1.4029e-07 1.35029125e-05 1.1093e-07 1.42360166666667e-05 0.078 54.80272 4 6_S_1.000,85_G_0.923,624_T_0.904,956_N_0.936 0.340640580805706 na NA NA 0.340640580805706 na NA NA 0.340640580805706 Y 3.95448864210942e-07 2 16, 17 0.340640580805706 Y 7.96770123661733e-10 4 16, 17, 1075, 15 0.340640580805706 Y 0 0 POLA1_sequences_filtered_longestORFs_mafft_mincov_prank POLA1_all 1919 22 0.301302665223 0.259 Y 0.0000 11 122, 123, 270, 547, 836, 847, 955, 1296, 1390, 1633, 1678 Y 3.723647917907225e-06 3 122, 345, 1678 Y 2.007229115287742e-08 4 122, 345, 351, 1678 Y 0.0014215605953936511 3 122, 345, 351 na na 0 na
+POLA2 POLA2 POLA2 nsp1 list26_COV_list4dataset2nonOrf DNA polymerase alpha 2, accessory subunit - no 24 1797 599 0.15279 0.51575 0.0645 0.4225 0.16456 0.519308196721311 0.15917 0.498215040650407 0.3952 1 NA NA NA POLA2 ENSMLUG00000003879.2 ENSMLUT00000003883.2 9 600 98.33333333 0.17624986 0.3733 0.96837 0.97292 -4965.384841 -4964.261652 0.325240946 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POLA2 1 1 NA NA NA 1413 471 0.20687 0.29671 0.0467 0.2257 1 1 1 1 1 1 NA NA NA 0.168255219010034 N 0.395194195782867 NA 0.168255219010034 N 0.151251388794621 NA 0.168255219010034 N 0.586751388685557 NA 0.168255219010034 Y 0.0461514860492117 1 524 0.168255219010034 N 1 1 84 POLA2_sequences_filtered_longestORFs_mafft_mincov_prank POLA2_all 998 24 0.184125429083 0.175 N 1.0000 5 356, 436, 496, 498, 513 N 0.9999988280067147 0 na N 0.1198582560555339 0 na N 1.0 0 na N 0.1193135949950122 0 na
+POR POR POR nsp2 list26_COV_list4dataset2nonOrf cytochrome p450 oxidoreductase CPR|CYPOR|P450R no 23 2043 681 0.04527 0.69983 0.0518 1.1451 1 1 0.9344 1 1 1 NA NA NA POR ENSMLUG00000017792.2 ENSMLUT00000017796.2 9 685 99.12408759 0.146073289 0.3303 0.75413 0.75409 -4874.958514 -4874.954571 0.996064763 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POR 0.04458031 0.618876279 NA NA NA 1284 428 0.05143 0.28952 0.0263 0.5117 0.62656 1 0.52077 1 0.89448 1 NA NA NA 0.0877047696353397 N 0.999999000001071 NA 0.0877047696353397 N 0.81061423814268 NA 0.0877047696353397 N 0.999997634108765 NA 0.0877047696353397 Y 0.00169598948358822 5 65, 263, 348, 590, 63 0.0877047696353397 Y 0.0392 3 65, 563, 564 POR_sequences_filtered_longestORFs_mafft_mincov_prank POR_all 1040 24 0.067794049403 0.052 Y 0.0000 6 214, 215, 289, 798, 830, 849 N 0.9999484617067621 0 na Y 4.880931697279608e-06 3 215, 567, 572 N 0.3620402085436244 0 na Y 9.194506709446797e-13 1 215
+PPIL3 PPIL3 PPIL3 nsp12 list24_COV_list2nonOrf peptidylprolyl isomerase like 3 CYPJ no 22 486 162 0.08706 0.30564 0.0282 0.3245 1 1 1 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPIL3 1 1 NA NA NA 444 148 0.10982 0.23897 0.0273 0.2485 1 1 1 1 1 1 NA NA NA 0.0910456058825541 N 1 NA 0.0910456058825541 N 0.999954001057986 NA 0.0910456058825541 N 0.999998922959333 NA 0.0910456058825541 N 0.999999877453214 NA 0.0910456058825541 N 1 0 PPIL3_sequences_filtered_longestORFs_mafft_mincov_prank PPIL3_all 624 23 0.167852646185 0.178 Y 0.0037 2 54, 316 N 0.9999980185276931 0 na N 0.999954805226432 0 na N 1.0 0 na N 1.0 0 na
+PPT1 PPT1 PPT1 orf10 list25_COV_list3dataset2orf palmitoyl-protein thioesterase 1 CLN1|INCL|PPT no 24 921 307 0.13334 0.44277 0.0502 0.3763 0.26734 0.68064477124183 0.5405 1 0.77288 1 NA NA NA PPT1 ENSMLUG00000011644.2 ENSMLUT00000011641.2 9 267 96.25468165 0.257815896 0.2072 0.66153 0.66126 -1903.829352 -1903.71181 0.889103169 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 750 250 0.16672 0.30025 0.0383 0.2296 0.40213 1 0.64047 1 0.70249 1 NA NA NA 0.128545378216746 N 0.781132882163462 NA 0.128545378216746 N 0.536584085211645 NA 0.128545378216746 N 0.941541009683962 NA 0.128545378216746 N 0.26128590438868 NA 0.128545378216746 N 1 0 PPT1_sequences_filtered_longestORFs_mafft_mincov_prank PPT1_all 411 24 0.170108493272 0.181 N 1.0000 0 na N 0.9999984412396187 0 na N 0.32403175500629133 0 na N 0.9831436846350813 0 na N 0.2621076452154077 0 na
+PRIM1 PRIM1 PRIM1 nsp1 list24_COV_list2nonOrf DNA primase subunit 1 p49 no 23 1263 421 0.25068 0.30154 0.0544 0.2169 0.025364 0.147956666666667 0.078595 0.305647222222222 0.089922 0.5392625 0.34 10.08588 1 258_G_0.978 PRIM1 ENSMLUG00000016776.2 ENSMLUT00000016785.2 3 423 98.58156028 0.206815922 0.205 0.2646 0.27313 -2146.060778 -2144.796155 0.28234572 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PRIM1 1 1 NA NA NA 1086 362 0.23839 0.20889 0.0369 0.1547 0.83862 1 0.87813 1 0.97947 1 NA NA NA 0.248954600327437 N 0.08991450541177 NA 0.248954600327437 N 0.0812229854359841 NA 0.248954600327437 N 0.0826885951131158 NA 0.248954600327437 Y 0.021834567294587 1 258 0.248954600327437 N 1 2 258, 271 PRIM1_sequences_filtered_longestORFs_mafft_mincov_prank PRIM1_all 637 23 0.365201136035 0.367 Y 0.0381 11 42, 243, 400, 404, 419, 420, 430, 449, 471, 522, 523 N 0.3772508500342065 0 na N 0.0922978762770567 0 na N 0.7772447380686296 0 na Y 0.019742136871489187 0
+PRIM2 PRIM2 PRIM2 nsp1 list24_COV_list2nonOrf DNA primase subunit 2 PRIM2A|p58 yes 24 1530 510 0.32302 0.46099 0.0986 0.3053 7.1094e-08 5.474238e-06 3.3399e-07 2.1431025e-05 4.9329e-07 3.75824166666667e-05 6 4.30163 12 5_G_0.933,6_K_0.908,7_L_0.944,8_R_0.999,9_R_0.923,10_M_0.979,11_Q_0.996,164_Q_0.956,173_L_0.975,176_V_0.998,179_-_0.965,180_S_0.986 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1359 453 0.33447 0.35235 0.0764 0.2284 0.00010698 0.003432275 0.00025044 0.00803495 0.0005311 0.0185885 5.344 4.18248 8 5_G_0.954,6_K_0.938,7_L_0.959,8_R_0.948,142_Q_0.964,145_I_0.926,151_N_0.919,153_V_0.998 0.358554980767097 Y 4.93701871956739e-07 4 8, 11, 176, 180 0.358554980767097 Y 3.95520981728186e-07 8 8, 10, 11, 164, 173, 176, 179, 180 0.358554980767097 Y 1.15863455096272e-05 0 0.358554980767097 Y 5.09524618878292e-10 15 164, 5, 6, 7, 8, 9, 10, 11, 76, 167, 173, 174, 176, 179, 180 0.358554980767097 N 0.0547 5 5, 7, 11, 73, 278 PRIM2_sequences_filtered_longestORFs_mafft_mincov_prank PRIM2_all 634 19 0.330737120235 0.295 Y 0.0000 14 21, 23, 24, 27, 89, 186, 190, 199, 201, 202, 348, 349, 357, 381 Y 0.00010247199023237653 2 24, 348 Y 2.0254788105544518e-08 6 24, 26, 92, 199, 200, 348 Y 3.4608373136746415e-06 5 24, 26, 92, 199, 348 Y 1.105735315956251e-06 5 24, 26, 92, 199, 348
+PRKACA PRKACA PRKACA nsp13 list26_COV_list4dataset2nonOrf protein kinase cAMP-activated catalytic subunit alpha PKACA|PPNAD4 no 20 1056 352 0.01831 0.28052 0.0076 0.4162 1 1 1 1 1 1 NA NA NA PRKACA ENSMLUG00000008255.2 ENSMLUT00000008252.2 9 243 96.70781893 0.066924939 0.3759 0.73304 0.75682 -1703.989269 -1703.456416 0.586928073 NA NA NA PRKACA ENSG00000072062.13 ENST00000308677.8 15 352 93.18181818 0.588676251 0.5711 1.35481 1.37944 -2935.873854 -2935.292462 0.55911953 NA NA NA NA NA NA NA NA 786 262 0.04962 0.13391 0.0098 0.1969 0.74157 1 0.69838 1 1 1 NA NA NA 0.0310466922453189 N 0.867485050641086 NA 0.0310466922453189 N 0.0617867091466257 NA 0.0310466922453189 N 0.98359237659118 NA 0.0310466922453189 Y 0.0236803109112055 2 349, 62 0.0310466922453189 N 0.2496 1 349 PRKACA_sequences_filtered_longestORFs_D365gp2_prank PRKACA_365-2 501 18 0.039710780541 0.052 N 0.2569 1 499 N 0.9999991376127207 0 na N 0.13572725067863908 0 na N 1.0 0 na N 0.18050442252244114 0 na
+PRKAR2A PRKAR2A PRKAR2A nsp13 list26_COV_list4dataset2nonOrf protein kinase cAMP-dependent type II regulatory subunit alpha PKR2|PRKAR2 no 24 1215 405 0.292 0.40393 0.0797 0.273 0.31871 0.757428086419753 0.49167 1 0.61064 1 NA NA NA PRKAR2A ENSMLUG00000016288.2 ENSMLUT00000016294.2 11 306 86.92810458 0.096603538 0.5384 0.97041 0.97603 -2217.430293 -2214.792451 0.071515433 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 933 311 0.38004 0.22242 0.0506 0.1331 1 1 1 1 1 1 NA NA NA 0.318807653927147 na NA NA 0.318807653927147 na NA NA 0.318807653927147 N 0.999833687302166 NA 0.318807653927147 N 0.84012901043378 NA 0.318807653927147 na NA 0 PRKAR2A_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank PRKAR2A_all_part1 984 23 0.299073519639 0.282 N 1.0000 4 201, 598, 833, 845 Y 0.024791201325934854 2 201, 212 Y 0.002101126869598929 2 201, 212 Y 0.04522976007777733 0 Y 0.003312672544899771 1 201
+PRKAR2B PRKAR2B PRKAR2B nsp13 list26_COV_list4dataset2nonOrf protein kinase cAMP-dependent type II regulatory subunit beta PRKAR2|RII-BETA no 23 1266 422 0.12042 0.30311 0.0326 0.2704 0.053419 0.244624470588235 0.15359 0.484689754098361 0.19343 0.886554166666667 0.44 8.4592 1 61_A_0.983 PRKAR2B ENSMLUG00000012418.2 ENSMLUT00000012421.2 11 305 99.01639344 0.022501629 0.2602 0.46327 0.46328 -1820.904966 -1820.90569 0.999276262 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 972 324 0.08201 0.16457 0.014 0.1708 0.687 1 0.79637 1 0.92204 1 NA NA NA 0.110793052661876 N 0.193475962313324 NA 0.110793052661876 N 0.140032043558717 NA 0.110793052661876 N 0.425453413063638 NA 0.110793052661876 Y 0.025600792164075 1 61 0.110793052661876 Y 0.017 3 61, 263, 264 PRKAR2B_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank PRKAR2B_all_part1 653 24 0.158472375125 0.155 Y 0.0156 3 248, 472, 473 N 0.4699461333020021 0 na Y 0.02022628095991523 2 248, 292 N 0.5163347414967244 0 na N 0.25132710025408966 0 na
+PRRC2B PRRC2B PRRC2B nsp12 list26_COV_list4dataset2nonOrf proline rich coiled-coil 2B BAT2L|BAT2L1|KIAA0515|LQFBS-1 yes 22 6741 2247 0.16522 0.44272 0.0595 0.3599 0.0003574 0.00529226923076923 3.9029e-05 0.00100174433333333 0.0021999 0.0313689444444444 0.607 4.55415 4 573_C_0.978,1184_T_0.941,1236_T_0.961,1281_A_0.921 PRRC2B ENSMLUG00000001237.2 ENSMLUT00000001244.2 4 2229 96.54553611 0.202135193 0.3733 0.84743 0.86752 -14962.60934 -14958.13038 0.011345206 -14958.87192 0.223291688 NA PRRC2B ENSG00000130723.18 ENST00000638390.1 18 326 100 0.103200802 0.0727 0.12189 0.12189 -1593.364246 -1593.364279 0.999967001 NA NA NA PRRC2B 0.129440486 1 NA NA NA 5022 1674 0.22811 0.22154 0.0382 0.1673 0.39749 1 0.58988 1 0.69977 1 NA NA NA 0.198604471188092 Y 0.00234085975599707 0 0.198604471188092 Y 3.1734314061924e-05 2 573, 1236 0.198604471188092 Y 0.00226322060116859 1 573 0.198604471188092 Y 2.35234956671297e-05 3 1184, 1236, 573 0.198604471188092 N 1 8 573, 858, 1014, 1184, 1207, 1534, 1633, 1657 PRRC2B_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank PRRC2B_all_part1 3044 23 na na na na 0 na na na 0 na na na 0 na na na 0 na na na 0 na
+PSMD8 PSMD8 PSMD8 M list26_COV_list4dataset2nonOrf proteasome 26S subunit, non-ATPase 8 HEL-S-91n|HIP6|HYPF|Nin1p|Rpn12|S14|p31 no 24 1053 351 0.09383 0.50047 0.0581 0.6188 1 1 0.77716 1 1 1 NA NA NA PSMD8 ENSMLUG00000009902.2 ENSMLUT00000009898.2 7 341 88.85630499 0.126455804 0.3519 0.68178 0.77693 -2063.089941 -2054.398826 0.000168073 -2062.954793 3.52e-05 5 E32, A34, L28, S109, V14 NA NA NA NA NA NA NA NA NA NA NA NA NA PSMD8 0.983727412 1 NA NA NA 732 244 0.0832 0.29688 0.0318 0.3823 1 1 1 1 1 1 NA NA NA 0.156175370476948 N 1 NA 0.156175370476948 N 0.593998194016635 NA 0.156175370476948 N 0.999999504647017 NA 0.156175370476948 N 0.165007310664528 NA 0.156175370476948 N 1 1 23 PSMD8_sequences_filtered_longestORFs_mafft_mincov_prank PSMD8_all 501 24 0.141291057576 0.092 N 0.0615 2 88, 411 N 0.9943178708245272 0 na N 0.13875385381717611 0 na N 0.9212719586960403 0 na Y 0.005102625845940538 0
+PTBP2 PTBP2 PTBP2 orf9b list25_COV_list3dataset2orf polypyrimidine tract binding protein 2 PTBLP|brPTB|nPTB no 24 1614 538 1e-04 0.19238 0 0.2472 1 1 1 1 0.99787 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PTBP2 1 1 NA NA NA 1443 481 1e-04 0.12864 0 0.1638 0.99403 1 1 1 0.99863 1 NA NA NA 0.001 N 0.997902203457155 NA 0.001 N 0.9978712689683 NA 0.001 N 0.999999999996362 NA 0.001 N 0.99975438293537 NA 0.001 N 1 0 PTBP2_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank PTBP2_all_part1 871 22 0.007644042056 0.015 Y 0.0100 0 na N 0.9999999998981366 0 na N 0.9999957093679047 0 na Y 0.0023414146055088974 0 Y 0.000234512890837538 0
+PTGES2 PTGES2 PTGES2 nsp7 list26_COV_list4dataset2nonOrf prostaglandin E synthase 2 C9orf15|GBF-1|GBF1|PGES2|mPGES-2 no 24 1134 378 0.07702 0.72054 0.0775 1.0067 1 1 0.48597 1 1 1 NA NA NA PTGES2 ENSMLUG00000013576.2 ENSMLUT00000013581.2 8 375 80 0.203412788 0.4166 1.20399 1.24465 -2592.589381 -2591.41349 0.308543945 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PTGES2 1 1 NA NA NA 696 232 0.04953 0.29556 0.0245 0.4938 1 1 0.059658 0.49931152173913 0.99987 1 0.043 422.17375 0 noneOver_0.9 0.121723834542264 N 1 NA 0.121723834542264 N 0.999917003444046 NA 0.121723834542264 N 0.99999798160683 NA 0.121723834542264 N 0.342004523505909 NA 0.121723834542264 Y 0.0072 1 197 PTGES2_sequences_filtered_longestORFs_mafft_mincov_prank PTGES2_all 734 21 0.099052284958 0.091 Y 0.0000 10 223, 226, 243, 299, 351, 370, 486, 488, 610, 719 N 0.9999998492021518 0 na N 0.19146004921817086 0 na N 1.0 0 na N 0.478069098216242 0 na
+PUSL1 PUSL1 PUSL1 orf8 list23_COV_list1orf pseudouridylate synthase like 1 - yes 22 912 304 0.14275 0.85132 0.1262 0.8841 0.00048927 0.0067274625 0.00027699 0.00507815 0.0037234 0.0473736290322581 0.914 6.8565 2 141_S_0.923,303_E_0.987 NA NA NA NA NA NA NA NA NA NA NA NA NA PUSL1 ENSG00000169972.11 ENST00000467712.1 18 125 94.4 0.114100887 0.3613 0.93862 0.94765 -1034.121171 -1033.620377 0.606049266 NA NA NA PUSL1 0.365021161 1 NA NA NA 453 151 0.20245 0.52978 0.0976 0.482 0.63273 1 0.8921 1 1 1 NA NA NA 0.234681710445051 Y 0.00373839090290764 1 303 0.234681710445051 Y 0.000253623924586214 1 303 0.234681710445051 N 0.35733654323997 NA 0.234681710445051 N 0.109394238820461 NA 0.234681710445051 N 1 3 141, 261, 303 PUSL1_sequences_filtered_longestORFs_mafft_mincov_prank PUSL1_all 2174 20 0.136296404622 0.171 N 0.9380 4 161, 229, 501, 1587 N 0.9999998648163546 0 na N 0.8749368182311382 0 na N 1.0 0 na Y 0.00038279919550335127 1 1587
+PVR PVR PVR orf8 list23_COV_list1orf poliovirus receptor CD155|HVED|NECL5|Necl-5|PVS|TAGE4 yes 26 1263 421 0.55674 1.7972 0.5039 0.905 3.286e-14 6.32555e-12 2.733e-16 5.261025e-14 6.735e-14 1.2964875e-11 10.922 3.37707 20 24_-_0.925,81_R_0.951,219_I_0.933,343_W_0.999,345_N_1.000,356_V_0.975,364_F_0.963,370_W_0.996,373_C_0.996,375_R_0.959,381_-_0.956,388_R_0.999,389_T_0.984,390_A_0.951,391_A_0.952,393_T_0.942,394_L_0.997,403_P_0.978,410_S_0.969,420_R_0.993 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 753 251 0.6007 1.13723 0.3275 0.5451 1.6829e-07 1.295833e-05 8.8661e-07 6.826897e-05 1.1781e-06 9.07137e-05 11.142 4.14108 16 113_I_0.971,201_P_0.972,209_V_0.994,211_V_0.912,213_T_0.948,215_L_0.909,229_-_0.976,230_A_0.984,231_V_0.919,236_P_0.997,238_A_0.924,239_-_0.926,243_S_0.954,247_E_0.926,249_T_0.955,250_R_0.999 0.769119877046182 na NA NA 0.769119877046182 na NA NA 0.769119877046182 Y 8.96625619602978e-15 9 388, 389, 420, 391, 393, 394, 370, 343, 345 0.769119877046182 Y 1.20239437385189e-17 11 388, 389, 420, 391, 393, 394, 364, 370, 373, 343, 345 0.769119877046182 Y 0 29 12, 19, 24, 56, 59, 133, 170, 191, 343, 345, 354, 356, 362, 364, 366, 370, 373, 380, 391, 393, 394, 397, 401, 404, 410, 413, 416, 419, 420 PVR_sequences_filtered_longestORFs_mafft_mincov_prank PVR_all 1480 23 0.585837982910 0.442 Y 0.0000 41 207, 235, 237, 332, 357, 363, 367, 388, 397, 409, 412, 451, 452, 458, 469, 470, 512, 516, 518, 526, 535, 553, 558, 566, 569, 586, 593, 596, 598, 627, 628, 632, 634, 644, 647, 658, 673, 699, 707, 711, 1158 Y 2.3760715522747607e-07 2 1129, 1131 Y 8.657276700697942e-09 4 330, 1129, 1131, 1166 Y 3.5532082577431795e-10 3 1129, 1131, 1166 Y 2.135661414900621e-15 4 1129, 1131, 1166, 1285
+QSOX2 QSOX2 QSOX2 nsp7 list26_COV_list4dataset2nonOrf quiescin sulfhydryl oxidase 2 QSCN6L1|SOXN no 24 2097 699 0.20663 0.88694 0.1456 0.7046 0.67587 1 0.6123 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA QSOX2 ENSG00000165661.16 ENST00000455222.1 17 283 95.75971731 0.177627444 0.3308 0.91996 0.91996 -2333.494261 -2333.494261 1 NA NA NA NA NA NA NA NA 1260 420 0.2796 0.48719 0.0958 0.3426 0.053471 0.3601675 0.11783 0.734170161290323 0.16321 1 0.944 6.84638 4 63_N_0.901,200_P_0.924,245_S_0.919,383_D_0.965 0.234470842586392 N 1 NA 0.234470842586392 N 0.597467135521691 NA 0.234470842586392 N 0.999997913805958 NA 0.234470842586392 N 0.954609634892586 NA 0.234470842586392 Y 0 60 14, 44, 48, 54, 57, 95, 117, 157, 166, 199, 206, 207, 209, 213, 217, 219, 235, 239, 274, 280, 311, 343, 360, 371, 382, 426, 441, 445, 451, 468, 470, 471, 501, 510, 513, 520, 553, 558, 563, 565, 569, 573, 579, 583, 586, 595, 599, 601, 604, 606, 610, 613, 631, 632, 634, 635, 640, 641, 645, 655 QSOX2_sequences_filtered_longestORFs_mafft_mincov_prank QSOX2_all 1379 24 0.198021545110 0.196 Y 0.0014 13 619, 621, 660, 859, 867, 966, 971, 975, 1102, 1239, 1262, 1315, 1322 N 0.9999991493690666 0 na N 0.9999947352000511 0 na N 1.0 0 na N 0.05059006833084182 0 na
+RAB10 RAB10 RAB10 nsp7 list24_COV_list2nonOrf RAB10, member RAS oncogene family - no 24 603 201 0.01254 0.14137 0.0022 0.179 1 1 1 1 0.99981 1 NA NA NA RAB10 ENSMLUG00000009937.2 ENSMLUT00000009931.2 4 201 87.56218905 0.949840879 0.0764 3.28637 11.64957 -1449.293237 -1442.149102 0.000789481 -1446.23852 0.004238195 2 K136, S18 NA NA NA NA NA NA NA NA NA NA NA NA NA RAB10 0.991187256 1 NA NA NA 504 168 0.03665 0.08073 0.0029 0.0801 1 1 0.96527 1 0.99998 1 NA NA NA 0.0134540213698097 N 0.999778024640169 NA 0.0134540213698097 N 0.999815017111457 NA 0.0134540213698097 N 0.999999982759391 NA 0.0134540213698097 N 0.999999659180902 NA 0.0134540213698097 N 0.2923 0 RAB10_sequences_filtered_longestORFs_D179gp1_prank RAB10_179-1 298 18 0.183203580220 0.167 N 0.8383 0 na N 0.9998517557629133 0 na N 0.9778259585062402 0 na N 0.9066489037539605 0 na N 0.887807800762026 0 na
+RAB14 RAB14 RAB14 nsp7 list26_COV_list4dataset2nonOrf RAB14, member RAS oncogene family FBP|RAB-14 no 24 648 216 1e-04 0.14521 0 0.1768 0.99535 1 1 1 0.99934 1 NA NA NA RAB14 ENSMLUG00000009818.2 ENSMLUT00000009814.2 6 216 98.61111111 NA 0.1122 0.12105 0.12105 -969.858557 -969.859346 0.999211311 NA NA NA RAB14 ENSG00000119396.10 ENST00000451303.1 6 181 83.97790055 0.056879213 4.361 118.74761 118.74786 -2021.457931 -2021.458026 0.999905005 NA NA NA RAB14 1 1 NA NA NA 579 193 1e-04 0.0741 0 0.1017 1 1 1 1 0.99961 1 NA NA NA 0.001 N 0.999330224399981 NA 0.001 N 0.999330224399981 NA 0.001 N 0.999999999999545 NA 0.001 N 0.999995922303598 NA 0.001 N 1 0 RAB14_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank RAB14_all_part1 254 24 0.052888426522 0.708 Y 0.0000 2 148, 150 N 0.40730452460593103 0 na Y 0.00019146069674151985 4 148, 150, 157, 160 N 0.5096658316912588 0 na Y 0.015560805410051986 0
+RAB18 RAB18 RAB18 nsp7 list26_COV_list4dataset2nonOrf RAB18, member RAS oncogene family RAB18LI1|WARBM3 no 24 708 236 0.17802 0.30731 0.0468 0.2628 0.017166 0.106595322580645 0.030943 0.165459097222222 1 1 9.427 2.66212 2 67_Q_0.955,83_I_0.988 NA NA NA NA NA NA NA NA NA NA NA NA NA RAB18 ENSG00000099246.16 ENST00000611151.4 8 183 78.1420765 NA 0.0772 50.06601 50.06601 -1098.885766 -1098.886007 0.999759029 NA NA NA RAB18 0.159860625 1 NA NA NA 639 213 0.24266 0.26468 0.0494 0.2034 0.0083667 0.0920337 0.02785 0.26805625 0.0098141 0.136910125 1.061 24.99888 2 56_Q_1.000,72_I_0.999 0.16742869277714 N 0.058419356333297 NA 0.16742869277714 Y 0.0459992586006511 2 67, 83 0.16742869277714 N 0.142410019335157 NA 0.16742869277714 Y 0.00116197338084413 6 67, 70, 80, 83, 179, 181 0.16742869277714 Y 0 3 67, 80, 83 RAB18_sequences_filtered_longestORFs_mafft_mincov_prank RAB18_all 605 23 0.162891920389 0.203 Y 0.0000 4 55, 56, 254, 287 N 0.9999999772123831 0 na N 0.5621434944866635 0 na N 1.0 0 na N 0.22313016014842982 0 na
+RAB1A RAB1A RAB1A nsp7 list24_COV_list2nonOrf RAB1A, member RAS oncogene family RAB1|YPT1 no 24 621 207 0.12597 0.16359 0.0185 0.1468 1 1 1 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RAB1A ENSG00000138069.16 ENST00000409751.1 9 174 82.75862069 0.499843608 0.1626 6.55767 9.93272 -1539.230194 -1538.975128 0.774865355 NA NA NA NA NA NA NA NA 558 186 0.32499 0.07922 0.0173 0.0532 0.32736 1 0.60497 1 0.619 1 NA NA NA 0.109722709341681 na NA NA 0.109722709341681 na NA NA 0.109722709341681 N 0.774613363443702 NA 0.109722709341681 N 0.290077096135341 NA 0.109722709341681 na NA 0 RAB1A_sequences_filtered_longestORFs_mafft_mincov_prank RAB1A_all 506 23 0.071955603138 0.068 Y 0.0002 1 258 N 0.6733332828164793 0 na Y 0.022835370766341775 1 7 N 1.0 0 na Y 0.0015884445690762155 1 7
+RAB2A RAB2A RAB2A nsp7 list26_COV_list4dataset2nonOrf RAB2A, member RAS oncogene family LHX|RAB2 no 23 639 213 0.01381 0.13108 0.0022 0.1564 1 1 1 1 0.9999 1 NA NA NA RAB2A ENSMLUG00000002855.2 ENSMLUT00000002854.2 3 213 89.6713615 0.086657441 3.2719 2.06104 2.08099 -1254.284249 -1254.161503 0.884488294 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RAB2A 0.936556195 1 NA NA NA 561 187 0.03013 0.06406 0.0024 0.0788 1 1 1 1 1 1 NA NA NA 0.0153778239487918 N 0.999897005304351 NA 0.0153778239487918 N 0.999898005201853 NA 0.0153778239487918 N 0.990763290109805 NA 0.0153778239487918 N 0.999999967872328 NA 0.0153778239487918 N 0.2802 0 RAB2A_sequences_filtered_longestORFs_D450gp2_prank RAB2A_450-2 430 23 0.049894825996 0.060 Y 0.0246 0 na N 0.9999999998710791 0 na N 0.9898001480708969 0 na Y 0.00195767056459931 0 Y 0.0015461303778478448 0
+RAB5C RAB5C RAB5C nsp7 list26_COV_list4dataset2nonOrf RAB5C, member RAS oncogene family L1880|RAB5CL|RAB5L|RABL no 24 750 250 0.0396 0.28983 0.0127 0.3195 1 1 1 1 0.9999 1 NA NA NA RAB5C ENSMLUG00000012028.2 ENSMLUT00000012028.2 4 231 98.7012987 0.023643529 0.1822 0.25581 0.25581 -1154.967665 -1154.967824 0.999841013 NA NA NA RAB5C ENSG00000108774.14 ENST00000393860.7 11 217 84.79262673 0.157854272 2.3996 7.12002 7.20502 -2592.156591 -2589.267353 0.055618578 NA NA NA RAB5C 0.088837574 0.897128617 NA NA NA 555 185 0.03881 0.17157 0.0083 0.2127 1 1 1 1 0.9999 1 NA NA NA 0.0344293197784186 N 0.999903004704252 NA 0.0344293197784186 N 0.999901004900247 NA 0.0344293197784186 N 0.999999943256855 NA 0.0344293197784186 N 0.999978169714947 NA 0.0344293197784186 N 1 0 RAB5C_sequences_filtered_longestORFs_D189gp2_prank RAB5C_189-2 414 16 0.029945684662 0.037 Y 0.0061 1 122 N 0.4176935942643851 0 na Y 0.02946882819084406 1 122 N 0.20576922605988013 0 na N 0.050488989306910946 0 na
+RAB7A RAB7A RAB7A nsp7 list24_COV_list2nonOrf RAB7A, member RAS oncogene family PRO2706|RAB7 no 24 624 208 0.01158 0.15723 0.0022 0.1928 1 1 1 1 0.99987 1 NA NA NA RAB7A ENSMLUG00000008454.2 ENSMLUT00000008464.2 3 208 94.23076923 0.389627735 0.1863 0.43618 0.43832 -1137.365631 -1137.353927 0.988364225 NA NA NA RAB7A ENSG00000075785.12 ENST00000485280.1 17 92 96.73913043 NA 0.1067 0.08982 0.08982 -389.352117 -389.352321 0.999796021 NA NA NA RAB7A 0.536592405 1 NA NA NA 519 173 1e-04 0.07921 0 0.1258 1 1 1 1 0.99957 1 NA NA NA 0.0141048273091601 N 0.999868008711495 NA 0.0141048273091601 N 0.999869008580342 NA 0.0141048273091601 N 0.999999993805204 NA 0.0141048273091601 N 0.999998124569569 NA 0.0141048273091601 N 1 0 RAB7A_sequences_filtered_longestORFs_mafft_mincov_prank RAB7A_all 454 24 0.044385850106 0.061 Y 0.0010 2 267, 353 N 0.9999991343710571 0 na N 0.9996041823454711 0 na N 1.0 0 na N 0.15198096442869868 0 na
+RAB8A RAB8A RAB8A nsp7 list26_COV_list4dataset2nonOrf RAB8A, member RAS oncogene family MEL|RAB8 no 24 624 208 0.01061 0.28587 0.0043 0.4035 0.79362 1 0.79117 1 0.96637 1 NA NA NA RAB8A ENSMLUG00000006982.2 ENSMLUT00000006977.2 3 208 98.55769231 0.167179383 3.5313 1.98028 2.21968 -1315.811747 -1313.992403 0.162132075 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 459 153 0.01589 0.13078 0.0029 0.1843 0.96303 1 0.98434 1 0.99892 1 NA NA NA 0.0141814561524216 N 0.966209108276876 NA 0.0141814561524216 N 0.784239359298704 NA 0.0141814561524216 N 0.999999997885197 NA 0.0141814561524216 N 0.99998002547713 NA 0.0141814561524216 N 0.9982 0 RAB8A_sequences_filtered_longestORFs_D724gp2_prank RAB8A_724-2 468 23 0.022529444092 0.022 N 1.0000 0 na N 0.9999994011056489 0 na N 0.5659519017090746 0 na N 1.0 0 na N 1.0 0 na
+RAE1 RAE1 RAE1 orf6 list23_COV_list1orf ribonucleic acid export 1 MIG14|MRNP41|Mnrp41|dJ481F12.3|dJ800J21.1 no 24 1107 369 0.00791 0.40585 0.0038 0.4796 1 1 1 1 0.99892 1 NA NA NA RAE1 ENSMLUG00000011112.1 ENSMLUT00000011117.1 9 369 97.56097561 0.013932194 1.0889 1.36722 1.36724 -2952.601049 -2952.601896 0.999153359 NA NA NA RAE1 ENSG00000101146.12 ENST00000452119.1 19 87 100 0.006947847 0.2844 0.37107 0.37113 -493.477386 -493.511378 0.966579237 NA NA NA RAE1 0.985506504 1 NA NA NA 900 300 0.00677 0.2128 0.0016 0.2377 1 1 0.97368 1 0.99955 1 NA NA NA 0.00868496346652654 na NA NA 0.00868496346652654 na NA NA 0.00868496346652654 N 0.999999999983629 NA 0.00868496346652654 N 0.999992427530764 NA 0.00868496346652654 na NA 0 RAE1_sequences_filtered_longestORFs_mafft_mincov_prank RAE1_all 956 24 0.018212170402 0.020 Y 0.0314 0 na N 0.9999999947176548 0 na N 0.7952226447680236 0 na N 1.0 0 na N 0.9990004998331715 0 na
+RALA RALA RALA nsp7 list26_COV_list4dataset2nonOrf RAS like proto-oncogene A RAL no 24 624 208 0.00906 0.22301 0.0023 0.2537 1 1 1 1 0.99974 1 NA NA NA RALA ENSMLUG00000009687.2 ENSMLUT00000009669.2 4 207 81.64251208 0.399885613 0.4528 1.02844 1.02844 -1276.11971 -1276.11972 0.99999 NA NA NA RALA ENSG00000006451.7 ENST00000434466.1 9 164 79.26829268 0.773783832 0.3227 2.48609 2.60629 -1281.308936 -1280.469168 0.431810692 NA NA NA RALA 1 1 NA NA NA 549 183 0.01431 0.1379 0.0025 0.173 1 1 1 1 0.99987 1 NA NA NA 0.00987078146379606 N 0.9997390340574 NA 0.00987078146379606 N 0.99974103353769 NA 0.00987078146379606 N 0.999999997696023 NA 0.00987078146379606 N 0.999999260201367 NA 0.00987078146379606 N 1 0 RALA_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank RALA_all_part2 215 25 0.096781334415 0.095 N 1.0000 1 17 N 0.9999998606133528 0 na N 0.9999948267631796 0 na N 1.0 0 na N 0.9811793622428007 0 na
+RAP1GDS1 RAP1GDS1 RAP1GDS1 nsp2 list24_COV_list2nonOrf Rap1 GTPase-GDP dissociation stimulator 1 GDS1|SmgGDS no 24 1827 609 0.08686 0.17102 0.0147 0.1693 1 1 1 1 0.99803 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RAP1GDS1 ENSG00000138698.14 ENST00000514139.2 5 101 94.05940594 0.582003659 0.1136 0.16559 0.16557 -469.004579 -469.004584 0.999995 NA NA NA RAP1GDS1 1 1 NA NA NA 1707 569 0.07632 0.12971 0.01 0.1312 0.52455 1 0.62067 1 0.8167 1 NA NA NA 0.0828126031222723 N 0.998362342426919 NA 0.0828126031222723 N 0.800192464198946 NA 0.0828126031222723 N 0.999999991025106 NA 0.0828126031222723 N 0.108949332678179 NA 0.0828126031222723 N 1 0 RAP1GDS1_sequences_filtered_longestORFs_mafft_mincov_prank RAP1GDS1_all 1157 24 0.182272268296 0.166 Y 0.0000 6 550, 653, 798, 1055, 1074, 1081 Y 9.75681486532579e-68 1 107 Y 1.9880263266176278e-79 1 107 na na 0 na na na 0 na
+RBM28 RBM28 RBM28 N list26_COV_list4dataset2nonOrf RNA binding motif protein 28 ANES no 22 2307 769 0.34258 0.47328 0.1046 0.3052 0.42504 0.928785310734463 0.54944 1 0.72893 1 NA NA NA RBM28 ENSMLUG00000002186.2 ENSMLUT00000002190.2 9 763 91.08781127 0.235335938 0.2569 0.78998 0.79964 -5494.801233 -5488.975374 0.002950269 -5494.088549 0.001384484 4 G9, T538, G91, L618 RBM28 ENSG00000106344.8 ENST00000459726.1 8 204 79.90196078 0.18206032 0.1638 0.29879 0.29879 -920.743821 -920.743821 1 NA NA NA RBM28 0.722677185 1 NA NA NA 1950 650 0.39408 0.34188 0.0821 0.2084 0.22476 0.961473333333333 0.41473 1 0.47929 1 NA NA NA 0.362111896114179 N 0.904633852518757 NA 0.362111896114179 N 0.74391090698203 NA 0.362111896114179 N 0.999991857950086 NA 0.362111896114179 N 0.853952451969065 NA 0.362111896114179 N 0.473 4 91, 97, 251, 655 RBM28_sequences_filtered_longestORFs_mafft_mincov_prank RBM28_all 1042 22 0.328426149580 0.311 N 0.4597 13 72, 142, 151, 293, 306, 314, 383, 683, 715, 758, 781, 791, 996 N 0.9999993242392985 0 na N 0.8502052545444388 0 na N 0.173600256364976 0 na N 0.11158150149347275 0 na
+RBM41 RBM41 RBM41 nsp12 list26_COV_list4dataset2nonOrf RNA binding motif protein 41 - no 23 1242 414 0.25091 0.211 0.0395 0.1574 1 1 1 1 1 1 NA NA NA RBM41 ENSMLUG00000005943.2 ENSMLUT00000005943.2 10 414 99.27536232 0.164119253 0.1646 0.4821 0.48227 -2731.000804 -2730.808618 0.825153376 NA NA NA RBM41 ENSG00000089682.16 ENST00000434854.1 19 203 90.14778325 0.152327093 0.1286 0.35954 0.36015 -1078.840722 -1077.193702 0.192623071 NA NA NA NA NA NA NA NA 1146 382 0.22717 0.1755 0.0316 0.1393 1 1 1 1 1 1 NA NA NA 0.274341782107327 N 1 NA 0.274341782107327 N 0.999999000000616 NA 0.274341782107327 N 0.999606535436603 NA 0.274341782107327 N 0.953953212045503 NA 0.274341782107327 N 1 1 413 RBM41_sequences_filtered_longestORFs_mafft_mincov_prank RBM41_all 1223 24 0.312052480947 0.340 Y 0.0008 8 37, 167, 201, 874, 879, 880, 1007, 1217 N 0.2109063097851672 0 na N 0.08505208405629817 0 na N 0.059725273885798714 0 na Y 0.00017390524083438558 0
+RBX1 RBX1 RBX1 orf10 list25_COV_list3dataset2orf ring-box 1 BA554C12.1|RNF75|ROC1 no 24 327 109 1e-04 0.16056 0 0.164 1 1 1 1 0.99971 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 261 87 1e-04 0.07561 0 0.0733 1 1 1 1 0.99989 1 NA NA NA 0.001 na NA NA 0.001 na NA NA 0.001 N 0.999999334169326 NA 0.001 na NA NA 0.001 N 1 0 RBX1_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank RBX1_all_part2 567 24 0.119128948301 0.152 Y 0.0209 0 na N 0.9999997240120518 0 na N 0.9998308519294604 0 na Y 0.00825447336109025 1 450 Y 0.0003245730277967795 2 423, 450
+RDX RDX RDX nsp13 list26_COV_list4dataset2nonOrf radixin DFNB24 no 24 1818 606 0.04733 0.23036 0.0125 0.2643 1 1 1 1 0.99971 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RDX 0.664925023 1 NA NA NA 1602 534 0.0578 0.1471 0.0088 0.1527 1 1 1 1 0.9999 1 NA NA NA 0.0455861406813667 N 0.999709042336105 NA 0.0455861406813667 N 0.999710042045985 NA 0.0455861406813667 N 0.999999996715815 NA 0.0455861406813667 N 0.984553589448001 NA 0.0455861406813667 N 1 0 RDX_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank RDX_all_part1 2586 24 na na na na 0 na na na 0 na na na 0 na na na 0 na na na 0 na
+REEP5 REEP5 REEP5 M list24_COV_list2nonOrf receptor accessory protein 5 C5orf18|D5S346|DP1|TB2|YOP1|Yip2e no 24 570 190 0.05899 0.29277 0.0195 0.3303 1 1 1 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REEP5 ENSG00000129625.12 ENST00000504247.1 15 100 96 0.148600334 0.1496 0.35671 0.36439 -565.263494 -565.198813 0.937366436 NA NA NA REEP5 1 1 NA NA NA 441 147 0.06432 0.17395 0.0127 0.1969 0.93106 1 0.86352 1 0.99626 1 NA NA NA 0.0572267897394644 N 1 NA 0.0572267897394644 N 0.857174297571264 NA 0.0572267897394644 N 0.999996609015917 NA 0.0572267897394644 N 0.197892902854004 NA 0.0572267897394644 N 1 0 REEP5_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank REEP5_all_part1 1006 24 0.086498435715 0.107 N 1.0000 2 866, 877 N 0.9999991875705408 0 na N 0.7813142126809386 0 na N 1.0 0 na N 0.696978998466959 0 na
+REEP6 REEP6 REEP6 M list26_COV_list4dataset2nonOrf receptor accessory protein 6 C19orf32|DP1L1|REEP6.1|REEP6.2|RP77|TB2L1|Yip2f no 24 555 185 0.19045 0.58601 0.1047 0.5499 1 1 1 1 0.99316 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REEP6 ENSG00000115255.10 ENST00000395484.4 13 140 96.42857143 0.350200437 0.1831 0.57981 0.58542 -928.791184 -928.544205 0.781157098 NA NA NA REEP6 1 1 NA NA NA 324 108 0.27398 0.30085 0.0593 0.2165 0.23693 0.983861290322581 0.47531 1 0.49332 1 NA NA NA 0.29311844617325 N 0.885356402812214 NA 0.29311844617325 N 0.502257672071617 NA 0.29311844617325 N 0.999999057091362 NA 0.29311844617325 N 0.984372784657607 NA 0.29311844617325 N 0.1408 1 42 REEP5_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank REEP5_all_part2 580 16 1.007695000550 1.111 Y 0.0001 12 48, 62, 73, 109, 222, 401, 416, 428, 484, 491, 496, 555 Y 0.0004223018320237546 1 222 Y 0.002160428267496892 0 Y 0.00033985211189276206 1 222 Y 0.00032198680226961615 3 132, 222, 416
+RHOA RHOA RHOA nsp7 list26_COV_list4dataset2nonOrf ras homolog family member A ARH12|ARHA|RHO12|RHOH12 no 23 582 194 0.04509 0.25785 0.0122 0.2715 1 1 1 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RHOA ENSG00000067560.10 ENST00000445425.4 18 129 88.37209302 0.071970158 2.0946 107.0399 106.9229 -1606.628616 -1601.617051 0.006660472 -1602.054288 0.349719687 NA RHOA 0.997743245 1 NA NA NA 504 168 0.0242 0.20048 0.0056 0.2296 1 1 1 1 1 1 NA NA NA 0.0426584926882211 N 0.820523276645021 NA 0.0426584926882211 N 0.999863009384076 NA 0.0426584926882211 N 0.999999990228162 NA 0.0426584926882211 N 0.999963302228151 NA 0.0426584926882211 N 1 0 RHOA_sequences_filtered_longestORFs_D615gp1_prank RHOA_615-1 343 15 0.137136178182 0.137 N 1.0000 0 na N 0.999999994000973 0 na N 0.9999972407217098 0 na N 1.0 0 na N 1.0 0 na
+RIPK1 RIPK1 RIPK1 nsp12 list24_COV_list2nonOrf receptor interacting serine/threonine kinase 1 RIP|RIP-1|RIP1 no 24 2016 672 0.38791 0.79006 0.182 0.4692 0.031589 0.162156866666667 0.030341 0.165459097222222 0.10033 0.56012 17.918 1.58393 1 664_H_0.951 RIPK1 ENSMLUG00000016163.2 ENSMLUT00000016166.2 11 669 94.76831091 0.230770476 0.5873 1.61018 1.63436 -6898.757894 -6891.727408 0.000884502 -6897.079258 0.001069215 1 L551 RIPK1 ENSG00000137275.13 ENST00000380409.2 15 672 99.10714286 0.277738169 0.2016 0.62393 0.6255 -5051.481263 -5051.29152 0.82717169 NA NA NA RIPK1 0.805490382 1 NA NA NA 1521 507 0.44562 0.52472 0.1298 0.2913 0.020117 0.184405833333333 0.04123 0.369152325581395 0.067245 0.663828846153846 8.033 2.75059 0 noneOver_0.9 0.403211251630485 N 0.100330955752648 NA 0.403211251630485 Y 0.0323467411616044 1 664 0.403211251630485 N 0.165888798489464 NA 0.403211251630485 N 0.0588849520852788 NA 0.403211251630485 N 0.9806 9 97, 169, 493, 524, 534, 592, 636, 663, 664 RIPK1_sequences_filtered_longestORFs_mafft_mincov_prank RIPK1_all 1289 24 0.435011990868 0.428 Y 0.0394 19 349, 389, 397, 691, 720, 762, 894, 923, 932, 939, 942, 944, 975, 1094, 1117, 1122, 1134, 1171, 1243 N 0.07701197414201069 0 na Y 0.0022642970437699115 1 1243 Y 0.009931934561597052 1 1243 Y 0.00010590162084967469 4 617, 948, 1220, 1243
+RNF41 RNF41 RNF41 nsp15 list26_COV_list4dataset2nonOrf ring finger protein 41 FLRF|NRDP1|SBBI03 no 24 954 318 0.00561 0.24274 0.0015 0.2718 1 1 0.99375 1 0.9998 1 NA NA NA RNF41 ENSMLUG00000006057.2 ENSMLUT00000006056.2 14 318 98.11320755 0.096264505 0.5611 2.00581 2.53274 -3299.790746 -3312.670484 2.55e-06 -3299.446508 2.71e-07 3 C120, I194, R178 RNF41 ENSG00000181852.17 ENST00000615206.4 17 318 99.05660377 NA 0.1463 0.19289 0.1929 -1584.778166 -1584.779342 0.998824691 NA NA NA NA NA NA NA NA 747 249 1e-04 0.1218 0 0.1501 1 1 1 1 1 1 NA NA NA 0.0060771141762427 N 0.999802019600751 NA 0.0060771141762427 N 0.8607957731163 NA 0.0060771141762427 N 0.999999998333351 NA 0.0060771141762427 N 0.999999536851299 NA 0.0060771141762427 N 0.671 0 RNF41_sequences_filtered_longestORFs_mafft_mincov_prank RNF41_all 480 23 0.003104031507 0.003 N 0.2850 0 na N 0.9999999999974989 0 na N 0.9999999403173678 0 na N 1.0 0 na N 0.9990004998336257 0 na
+RPL36 RPL36 RPL36 N list26_COV_list4dataset2nonOrf ribosomal protein L36 L36 no 24 318 106 0.01125 0.55677 0.0114 1.0159 1 1 1 1 0.99933 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 216 72 1e-04 0.38112 1e-04 0.5947 1 1 1 1 1 1 NA NA NA 0.0178234350572485 N 0.999317233191426 NA 0.0178234350572485 N 0.999320231147615 NA 0.0178234350572485 N 0.999999999990337 NA 0.0178234350572485 N 0.999990029778382 NA 0.0178234350572485 N 1 0 RPL36_sequences_filtered_longestORFs_mafft_mincov_prank RPL36_all 628 24 0.483461312002 0.362 Y 0.0001 14 337, 361, 371, 394, 417, 418, 431, 432, 582, 585, 596, 606, 607, 615 N 0.9999993193635006 0 na N 0.5593643172171061 0 na Y 2.728305563944152e-08 5 582, 585, 606, 607, 620 Y 1.8456858262039173e-10 6 230, 582, 585, 606, 607, 620
+RRP9 RRP9 RRP9 N list26_COV_list4dataset2nonOrf ribosomal RNA processing 9, U3 small nucleolar RNA binding protein RNU3IP2|U3-55K no 24 1431 477 0.11615 0.64947 0.0732 0.6301 0.73716 1 0.9087 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RRP9 ENSG00000114767.6 ENST00000232888.6 15 476 98.1092437 0.092429478 0.2269 0.48016 0.48015 -3052.516617 -3052.516695 0.999922003 NA NA NA RRP9 1 1 NA NA NA 984 328 0.109 0.36934 0.0421 0.3859 1 1 1 1 1 1 NA NA NA 0.163842828227939 N 1 NA 0.163842828227939 N 0.902424724508787 NA 0.163842828227939 N 0.99999755546904 NA 0.163842828227939 N 0.999553341066317 NA 0.163842828227939 N 0.9211 2 18, 43 RRP9_sequences_filtered_longestORFs_mafft_mincov_prank RRP9_all 584 24 0.155682509754 0.107 N 0.6394 6 38, 40, 65, 162, 207, 329 N 0.9999991275330271 0 na N 0.6244806248771296 0 na N 1.0 0 na Y 0.03568588666049016 1 126
+RTN4 RTN4 RTN4 M list26_COV_list4dataset2nonOrf reticulon 4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C no 25 3588 1196 0.39144 0.49586 0.1138 0.2907 1 1 1 1 1 1 NA NA NA RTN4 ENSMLUG00000009620.2 ENSMLUT00000009615.2 3 1182 93.82402707 0.35406443 0.2724 0.57599 1.48161 -6918.969966 -6896.923627 2.66e-10 -6918.554509 4.79e-11 3 Q169, R170, P167 RTN4 ENSG00000115310.17 ENST00000402434.6 11 346 94.79768786 0.191128322 0.2098 0.53405 0.53248 -2201.323838 -2201.097352 0.797330505 NA NA NA NA NA NA NA NA 2940 980 0.48069 0.34429 0.0888 0.1848 1 1 1 1 1 1 NA NA NA 0.383327369813347 N 0.140410500542192 NA 0.383327369813347 N 0.108210053607149 NA 0.383327369813347 N 0.329972469768631 NA 0.383327369813347 N 0.120548352606579 NA 0.383327369813347 N 0.3143 8 111, 118, 151, 270, 636, 911, 968, 970 RTN4_sequences_filtered_longestORFs_mafft_mincov_prank RTN4_all 8139 25 0.171867113055 0.312 Y 0.0000 7 239, 564, 2805, 5381, 6195, 8068, 8111 N 0.9999997229961466 0 na N 0.9999601599127923 0 na N 0.0713612695564276 0 na Y 0.04221414181437675 0
+SAAL1 SAAL1 SAAL1 M list26_COV_list4dataset2nonOrf serum amyloid A like 1 SPACIA1 yes 24 1431 477 0.28675 0.45035 0.0865 0.3016 9.2123e-06 0.000272825807692308 2.6072e-05 0.00071698 5.4487e-05 0.00161365346153846 3.263 4.79472 6 14_C_0.998,15_D_0.996,17_Q_0.949,57_S_0.939,376_T_0.908,455_H_0.981 SAAL1 ENSMLUG00000008022.2 ENSMLUT00000008033.2 9 474 97.0464135 0.171414604 0.3324 0.7726 0.77317 -3561.95974 -3561.937062 0.977577213 NA NA NA SAAL1 ENSG00000166788.9 ENST00000530180.1 17 209 86.12440191 0.247077178 0.1884 0.41042 0.41683 -1145.791328 -1143.177301 0.073239016 NA NA NA SAAL1 1 1 NA NA NA 1224 408 0.27904 0.26897 0.0511 0.1832 0.44278 1 0.66234 1 0.74608 1 NA NA NA 0.27092853776948 Y 5.45060420029685e-05 3 14, 15, 455 0.27092853776948 Y 3.22601769552091e-05 3 14, 15, 455 0.27092853776948 Y 0.000873038876516848 3 455, 14, 15 0.27092853776948 Y 3.21383730064155e-05 3 455, 14, 15 0.27092853776948 Y 0.0014 4 14, 15, 64, 229 SAAL1_sequences_filtered_longestORFs_mafft_mincov_prank SAAL1_all 906 24 0.290676205004 0.301 Y 0.0002 4 84, 201, 226, 466 N 0.20683626125030372 0 na Y 0.02973495952426878 6 79, 366, 466, 552, 556, 700 Y 0.036443214389920243 0 Y 0.0024713270633736194 0
+SBNO1 SBNO1 SBNO1 nsp12 list24_COV_list2nonOrf strawberry notch homolog 1 MOP3|Sno no 24 4188 1396 0.07513 0.35738 0.0296 0.3938 1 1 1 1 1 1 NA NA NA SBNO1 ENSMLUG00000017159.2 ENSMLUT00000017165.2 11 1393 91.74443647 0.020893622 0.515 1.06225 1.06226 -10339.1447 -10339.14578 0.998917586 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SBNO1 1 1 NA NA NA 3594 1198 0.08783 0.23818 0.0235 0.2676 1 1 1 1 1 1 NA NA NA 0.0828399530206414 N 0.999868008712405 NA 0.0828399530206414 N 0.798017302051061 NA 0.0828399530206414 N 0.999992955257115 NA 0.0828399530206414 Y 0.00918581928028665 2 224, 1355 0.0828399530206414 Y 0 6 767, 982, 1354, 1355, 1390, 1391 SBNO1_sequences_filtered_longestORFs_mafft_mincov_prank SBNO1_all 3019 22 0.069039630102 0.064 Y 0.0000 9 131, 845, 1072, 2514, 2807, 2948, 2949, 2984, 2985 N 0.9999996739734874 0 na Y 0.01503334418429866 1 2514 N 0.8105842459708948 0 na N 1.0 0 na
+SCAP SCAP SCAP orf9c list24_COV_list2nonOrf SREBF chaperone - no 22 3840 1280 0.07872 0.4931 0.0419 0.5329 0.33908 0.791186666666667 0.06311 0.27300393258427 0.69263 1 1.209 1.9665 2 600_H_0.920,904_T_0.911 SCAP ENSMLUG00000004086.2 ENSMLUT00000004092.2 9 1281 94.84777518 0.108448467 0.3923 1.23585 1.26031 -10360.59232 -10358.03438 0.07746423 NA NA NA SCAP ENSG00000114650.18 ENST00000428413.5 4 353 98.01699717 0.435790934 0.0736 0.18447 0.18947 -1736.169015 -1735.761127 0.665053361 NA NA NA SCAP 1 1 NA NA NA 2823 941 0.08702 0.22967 0.022 0.2531 0.99471 1 1 1 0.99999 1 NA NA NA 0.117718183421971 N 0.692952378532612 NA 0.117718183421971 N 0.0548154056245826 NA 0.117718183421971 N 0.867672126371096 NA 0.117718183421971 N 0.151780980210688 NA 0.117718183421971 N 1 3 566, 614, 864 SCAP_sequences_filtered_longestORFs_mafft_mincov_prank SCAP_all 1756 24 0.103990024565 0.082 N 0.6729 0 na N 0.9999999590691013 0 na Y 0.00582198304793135 1 1256 N 1.0 0 na Y 7.581270092171557e-08 1 1256
+SCARB1 SCARB1 SCARB1 nsp7 list26_COV_list4dataset2nonOrf scavenger receptor class B member 1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 no 25 1530 510 0.10383 0.62207 0.0784 0.7554 1 1 1 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SCARB1 ENSG00000073060.15 ENST00000545493.1 14 146 100 0.221176368 0.1874 0.49354 0.49355 -910.195166 -910.195401 0.999765028 NA NA NA SCARB1 0.06378625 0.750735805 NA NA NA 1059 353 0.12908 0.34857 0.0509 0.3941 1 1 1 1 1 1 NA NA NA 0.154741703201613 N 0.935013791065321 NA 0.154741703201613 N 0.990018152661702 NA 0.154741703201613 N 0.999999930678316 NA 0.154741703201613 N 0.141632062102036 NA 0.154741703201613 Y 0 5 38, 40, 127, 398, 472 SCARB1_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank SCARB1_all_part2 1623 24 0.094947443872 0.131 Y 0.0000 11 549, 607, 630, 703, 733, 911, 965, 993, 1432, 1531, 1622 N 0.9999999983037924 0 na N 0.42297612986890076 0 na Y 7.551887340080195e-27 1 1531 na na 0 na
+SCCPDH SCCPDH SCCPDH nsp7 list24_COV_list2nonOrf saccharopine dehydrogenase (putative) CGI-49|NET11 no 24 1290 430 0.26038 0.57846 0.1053 0.4043 1 1 1 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SCCPDH ENSG00000143653.9 ENST00000366510.3 15 430 97.6744186 0.196343201 0.1627 0.45905 0.45905 -2886.510879 -2886.510885 0.999994 NA NA NA SCCPDH 0.002019556 0.09129021 NA NA NA 999 333 0.29684 0.36519 0.074 0.2492 1 1 1 1 1 1 NA NA NA 0.271017636271465 N 1 NA 0.271017636271465 N 0.99340782435571 NA 0.271017636271465 N 0.999993047313706 NA 0.271017636271465 N 0.645764900245969 NA 0.271017636271465 N 0.9778 3 181, 196, 361 SCCPDH_sequences_filtered_longestORFs_mafft_mincov_prank SCCPDH_all 717 23 0.297146699972 0.323 Y 0.0242 4 203, 437, 632, 635 N 0.16718066834449946 0 na N 0.05798336825737528 0 na Y 0.03951796106177764 1 590 Y 0.015732919159708345 1 590
+SDF2 SDF2 SDF2 orf8 list25_COV_list3dataset2orf stromal cell derived factor 2 - no 23 636 212 0.13507 0.3131 0.0364 0.2694 1 1 1 1 1 1 NA NA NA SDF2 ENSMLUG00000012419.2 ENSMLUT00000012419.2 15 212 98.58490566 0.06852197 0.335 0.90704 0.90706 -1790.437725 -1790.438975 0.998750781 NA NA NA SDF2 ENSG00000132581.9 ENST00000591903.1 19 105 88.57142857 0.073449063 4.3067 9.69242 9.69891 -726.542628 -726.543552 0.999076427 NA NA NA SDF2 0.997743245 1 NA NA NA 522 174 0.10167 0.24504 0.0225 0.2215 1 1 0.96895 1 1 1 NA NA NA 0.138129496261401 N 1 NA 0.138129496261401 N 0.999993000024404 NA 0.138129496261401 N 0.99999351741267 NA 0.138129496261401 N 0.999999940186628 NA 0.138129496261401 N 1 0 SDF2_sequences_filtered_longestORFs_mafft_mincov_prank SDF2_all 364 23 0.091229165614 0.089 N 0.7862 0 na N 0.9999997541511068 0 na N 0.9999998942125841 0 na N 1.0 0 na N 0.9990004998331715 0 na
+SEPSECS SEPSECS SEPSECS nsp8 list24_COV_list2nonOrf Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase LP|PCH2D|SLA|SLA/LP yes 24 1506 502 0.23138 0.39192 0.0699 0.3022 0.00014539 0.0027987575 0.00073465 0.0104755648148148 0.00073013 0.0140550025 5.009 3.57509 6 246_D_0.971,375_M_1.000,383_H_0.956,385_D_0.950,386_E_0.925,456_K_0.990 SEPSECS ENSMLUG00000005883.2 ENSMLUT00000005885.2 11 505 92.07920792 0.157833305 0.327 0.84904 0.84915 -3816.572052 -3816.423878 0.862281065 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1296 432 0.24565 0.28571 0.0539 0.2196 8.3292e-06 0.000458106 4.8623e-05 0.002339981875 4.9379e-05 0.002715845 1.667 8.61509 5 325_M_1.000,333_H_0.980,345_A_0.902,394_K_0.996,428_Y_0.910 0.265200628901432 Y 0.000729932860477654 1 375 0.265200628901432 Y 0.00020116039159064 5 246, 375, 383, 385, 456 0.265200628901432 Y 0.00202607720846973 1 375 0.265200628901432 Y 1.69729225005173e-06 3 456, 246, 375 0.265200628901432 Y 0 4 375, 379, 383, 403 SEPSECS_sequences_filtered_longestORFs_mafft_mincov_prank SEPSECS_all 1204 24 0.200383584131 0.191 Y 0.0012 4 411, 792, 871, 1131 Y 0.04699410636855563 1 871 Y 0.000675790377354786 1 871 Y 0.022573017543302893 0 Y 0.002544044860029952 1 871
+SIGMAR1 SIGMAR1 SIGMAR1 nsp6 list26_COV_list4dataset2nonOrf sigma non-opioid intracellular receptor 1 ALS16|DSMA2|OPRS1|SIG-1R|SR-BP|SR-BP1|SRBP|hSigmaR1|sigma1R no 24 672 224 0.05548 0.42023 0.0297 0.5354 0.38838 0.874422807017544 0.596 1 0.67815 1 NA NA NA SIGMAR1 ENSMLUG00000003061.1 ENSMLUT00000003059.1 9 224 98.66071429 0.085786955 0.2738 0.68602 0.68531 -1513.500222 -1513.071044 0.651044033 NA NA NA SIGMAR1 ENSG00000147955.16 ENST00000477726.1 16 193 87.56476684 0.045269245 0.2398 0.42429 0.42002 -1002.547639 -1002.375629 0.841970753 NA NA NA NA NA NA NA NA 429 143 0.0585 0.29391 0.0203 0.3471 1 1 1 1 1 1 NA NA NA 0.0708859751903717 na NA NA 0.0708859751903717 na NA NA 0.0708859751903717 N 0.999999996685119 NA 0.0708859751903717 N 0.999978359640824 NA 0.0708859751903717 na NA 0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
+SIL1 SIL1 SIL1 orf8 list23_COV_list1orf SIL1 nucleotide exchange factor BAP|MSS|ULG5 no 24 1386 462 0.15942 0.59934 0.0829 0.52 0.12745 0.434232300884956 1 1 1 1 NA NA NA SIL1 ENSMLUG00000005198.2 ENSMLUT00000005199.2 11 385 98.44155844 0.116118369 0.3877 1.00231 1.00231 -3151.512186 -3151.512306 0.999880007 NA NA NA SIL1 ENSG00000120725.12 ENST00000505353.1 19 94 90.42553191 0.221006576 0.2776 0.74645 0.74672 -692.585908 -692.585983 0.999925003 NA NA NA NA NA NA NA NA 1059 353 0.20076 0.29004 0.047 0.2343 1 1 1 1 0.57402 1 NA NA NA 0.18537331069019 N 1 NA 0.18537331069019 N 0.997205910753736 NA 0.18537331069019 N 0.999996575279009 NA 0.18537331069019 N 0.772115903683137 NA 0.18537331069019 N 0.7096 1 14 SIL1_sequences_filtered_longestORFs_mafft_mincov_prank SIL1_all 586 24 0.187714729747 0.164 N 0.5261 5 98, 119, 143, 208, 560 N 0.9999991549406264 0 na N 0.2610615228717177 0 na N 1.0 0 na N 0.5210027286033118 0 na
+SIRT5 SIRT5 SIRT5 nsp14 list24_COV_list2nonOrf sirtuin 5 SIR2L5 yes 24 933 311 0.27368 0.6275 0.1152 0.421 2.9107e-06 0.0001400774375 8.4157e-06 0.000398629 1.6309e-05 0.000697662777777778 1.673 7.58579 4 22_P_0.989,26_R_0.992,46_F_0.978,303_C_1.000 SIRT5 ENSMLUG00000014620.2 ENSMLUT00000014625.2 10 311 99.03536977 0.237579341 0.3416 0.9244 0.92967 -2562.976409 -2561.669417 0.270632897 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 675 225 0.3326 0.34329 0.0735 0.221 0.0014798 0.0221197307692308 0.0060589 0.087456875 0.0067793 0.10701306 1.111 11.38468 2 17_P_0.990,33_F_0.987 0.254522389577224 Y 2.07299094415333e-05 4 22, 26, 46, 303 0.254522389577224 Y 4.37830016099368e-06 4 22, 26, 46, 303 0.254522389577224 Y 0.00340548697940312 1 303 0.254522389577224 Y 0.000190514294614452 3 46, 22, 303 0.254522389577224 N 0.3824 3 22, 26, 303 SIRT5_sequences_filtered_longestORFs_mafft_mincov_prank SIRT5_all 1468 24 0.258709335100 0.258 N 0.9680 6 21, 38, 42, 78, 912, 1095 Y 0.004669553010602517 1 1095 Y 4.899242027843421e-05 3 42, 78, 1095 Y 0.002159237778258251 2 42, 1095 Y 4.0711497970288204e-05 3 42, 78, 1095
+SLC25A21 SLC25A21 SLC25A21 M list26_COV_list4dataset2nonOrf solute carrier family 25 member 21 ODC|ODC1 yes 24 900 300 0.36182 0.33146 0.0714 0.1974 0.00044818 0.00639071481481482 0.0020029 0.0233671666666667 0.0021205 0.0313689444444444 2.169 6.95047 2 66_M_0.999,151_V_0.984 SLC25A21 ENSMLUG00000011418.2 ENSMLUT00000011420.2 8 241 96.68049793 0.18652784 0.2086 0.43093 0.43097 -1467.466963 -1467.465732 0.998769757 NA NA NA SLC25A21 ENSG00000183032.11 ENST00000331299.5 12 300 84 0.201973086 0.052 0.14097 0.14303 -1245.898917 -1244.559684 0.262046581 NA NA NA SLC25A21 0.023477256 0.440128319 NA NA NA 807 269 0.31758 0.21859 0.0441 0.139 0.052178 0.35872375 0.10182 0.7000125 0.1512 1 0.699 7.1217 1 124_V_0.911 0.374831498834812 Y 0.00254834793091485 1 66 0.374831498834812 Y 0.00235036886338724 2 66, 151 0.374831498834812 Y 0.00428947173144041 2 66, 151 0.374831498834812 Y 0.00175233143579094 2 66, 151 0.374831498834812 N 1 0 SLC25A21_sequences_filtered_longestORFs_mafft_mincov_prank SLC25A21_all 574 24 0.292486365788 0.285 N 1.0000 1 394 Y 0.01860047700992424 1 194 Y 0.004167232064733253 1 194 Y 0.016772745526491814 1 194 Y 0.009931934561606084 1 194
+SLC27A2 SLC27A2 SLC27A2 nsp2 list24_COV_list2nonOrf solute carrier family 27 member 2 ACSVL1|FACVL1|FATP2|HsT17226|VLACS|VLCS|hFACVL1 no 24 1863 621 0.30326 0.57184 0.1143 0.3768 0.0085308 0.06568716 0.013131 0.0936191666666667 0.02786 0.228214893617021 1.006 4.57613 2 415_V_0.954,471_H_0.985 SLC27A2 ENSMLUG00000005760.2 ENSMLUT00000005763.2 8 562 94.66192171 0.238231542 0.38 1.16873 1.19228 -4871.401646 -4860.608444 2.05e-05 -4867.625233 0.000179575 4 M177, A66, S190, L191 SLC27A2 ENSG00000140284.10 ENST00000544960.1 11 386 99.22279793 0.273820253 0.1152 0.35661 0.35882 -2334.118749 -2333.392009 0.483482577 NA NA NA SLC27A2 0.975987433 1 NA NA NA 1398 466 0.29917 0.41096 0.0826 0.276 1 1 1 1 1 1 NA NA NA 0.300083171977078 Y 0.0278604265574331 0 0.300083171977078 Y 0.0131710636946576 2 415, 471 0.300083171977078 Y 0.0395099005467774 1 471 0.300083171977078 Y 0.00898067537651827 1 471 0.300083171977078 N 0.2121 5 43, 249, 415, 471, 473 SLC27A2_sequences_filtered_longestORFs_mafft_mincov_prank SLC27A2_all 699 24 0.317116282607 0.315 N 0.7063 12 83, 99, 105, 305, 393, 413, 449, 471, 527, 529, 637, 680 Y 0.0018422547501865886 1 305 Y 4.588381649609601e-05 3 305, 306, 527 Y 0.0012633352896771774 1 305 Y 3.120288498361901e-05 4 305, 306, 471, 527
+SLC30A6 SLC30A6 SLC30A6 orf9c list26_COV_list4dataset2nonOrf solute carrier family 30 member 6 MST103|MSTP103|ZNT6 no 24 1506 502 0.10083 0.265 0.027 0.2674 0.99887 1 0.99051 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SLC30A6 ENSG00000152683.14 ENST00000440718.5 17 178 100 0.193019452 0.1015 0.16291 0.17605 -894.734632 -894.148265 0.556344818 NA NA NA SLC30A6 1 1 NA NA NA 1356 452 0.12835 0.21114 0.0261 0.203 1 1 0.99716 1 1 1 NA NA NA 0.100311266588437 N 1 NA 0.100311266588437 N 0.99999200003202 NA 0.100311266588437 N 0.99999820356495 NA 0.100311266588437 N 0.784439252629563 NA 0.100311266588437 N 0.7558 0 SLC30A6_sequences_filtered_longestORFs_mafft_mincov_prank SLC30A6_all 985 24 na na na na 0 na na na 0 na na na 0 na na na 0 na na na 0 na
+SLC30A7 SLC30A7 SLC30A7 M list26_COV_list4dataset2nonOrf solute carrier family 30 member 7 ZNT7|ZnT-7|ZnTL2 no 24 1131 377 0.07294 0.25557 0.0186 0.2553 1 1 1 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SLC30A7 ENSG00000162695.11 ENST00000370111.4 18 87 90.8045977 0.051964134 0.1617 0.20741 0.20741 -410.970434 -410.970485 0.999949001 NA NA NA SLC30A7 0.486651162 1 NA NA NA 975 325 0.09588 0.1955 0.0184 0.1921 1 1 1 1 1 1 NA NA NA 0.068632632886046 N 1 NA 0.068632632886046 N 0.999950001249878 NA 0.068632632886046 N 0.999996131132983 NA 0.068632632886046 N 0.999999964836662 NA 0.068632632886046 N 0.1652 2 177, 218 SLC30A7_sequences_filtered_longestORFs_mafft_mincov_prank SLC30A7_all 545 24 0.066592670400 0.064 Y 0.0014 2 177, 222 N 0.9999974619068248 0 na N 0.2984454068419767 0 na N 1.0 0 na N 0.9980019986669264 0 na
+SLC30A9 SLC30A9 SLC30A9 M list26_COV_list4dataset2nonOrf solute carrier family 30 member 9 BILAPES|C4orf1|GAC63|HUEL|ZNT9 no 24 1710 570 0.18206 0.30255 0.045 0.2471 0.83684 1 0.93433 1 0.97891 1 NA NA NA SLC30A9 ENSMLUG00000002605.2 ENSMLUT00000002607.2 5 568 95.77464789 0.206334706 0.1818 0.40627 0.41181 -3264.022594 -3262.675495 0.259993409 NA NA NA SLC30A9 ENSG00000014824.13 ENST00000513699.5 18 120 83.33333333 0.558165283 0.1582 0.60259 0.60259 -761.801825 -761.801825 1 NA NA NA SLC30A9 0.036645318 0.559873801 NA NA NA 1488 496 0.20868 0.2108 0.0352 0.1685 0.94112 1 0.98931 1 0.99741 1 NA NA NA 0.213613113642875 N 0.978869445791844 NA 0.213613113642875 N 0.933422817677577 NA 0.213613113642875 N 0.999997525239784 NA 0.213613113642875 N 0.987810928222933 NA 0.213613113642875 N 0.711 1 32 SLC30A9_sequences_filtered_longestORFs_mafft_mincov_prank SLC30A9_all 755 24 0.149571338056 0.120 N 0.3725 6 32, 68, 75, 357, 401, 555 N 0.9999974259705072 0 na N 0.9999999375395439 0 na N 1.0 0 na N 0.9970044955027636 0 na
+SLC44A2 SLC44A2 SLC44A2 E list24_COV_list2nonOrf solute carrier family 44 member 2 CTL2|PP1292 no 24 2127 709 0.05217 0.49832 0.0306 0.586 1 1 0.50379 1 1 1 NA NA NA SLC44A2 ENSMLUG00000006644.2 ENSMLUT00000006652.2 14 706 84.70254958 0.094531946 0.3716 1.00538 1.01985 -5241.309467 -5233.432311 0.00037931 -5239.946596 0.000306775 1 G126 SLC44A2 ENSG00000129353.14 ENST00000586549.1 18 148 97.97297297 0.020166154 0.1963 0.36902 0.37317 -858.571302 -858.061344 0.6005208 NA NA NA SLC44A2 0.001390998 0.070168603 NA NA NA 1590 530 0.06982 0.29745 0.0231 0.3303 1 1 1 1 1 1 NA NA NA 0.0623975280371507 na NA NA 0.0623975280371507 na NA NA 0.0623975280371507 N 0.999998407931701 NA 0.0623975280371507 N 0.251271070536197 NA 0.0623975280371507 Y 0.0175 4 34, 416, 674, 684 SLC44A2_sequences_filtered_longestORFs_mafft_mincov_prank SLC44A2_all 1219 24 na na na na 0 na na na 0 na na na 0 na na na 0 na na na 0 na
+SLC9A3R1 SLC9A3R1 SLC9A3R1 orf9b list25_COV_list3dataset2orf SLC9A3 regulator 1 EBP50|NHERF|NHERF-1|NHERF1|NPHLOP2 no 23 1077 359 0.09675 0.48167 0.0594 0.6134 0.55212 1 0.24235 0.657075704225352 0.8662 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SLC9A3R1 1 1 NA NA NA 675 225 0.09107 0.23244 0.0252 0.2771 0.95163 1 1 1 1 1 NA NA NA 0.169022995535145 N 0.866192594196505 NA 0.169022995535145 N 0.227464976930609 NA 0.169022995535145 N 0.625290524461393 NA 0.169022995535145 N 0.245543766026807 NA 0.169022995535145 N 1 1 184 SLC9A3R1_sequences_filtered_longestORFs_mafft_mincov_prank SLC9A3R1_all 448 23 0.178234732419 0.101 N 0.7234 4 64, 181, 191, 365 N 0.9999993284375231 0 na N 0.9972514474835665 0 na N 1.0 0 na N 1.0 0 na
+SLU7 SLU7 SLU7 nsp12 list24_COV_list2nonOrf SLU7 homolog, splicing factor 9G8|hSlu7 no 24 1770 590 0.06299 0.26477 0.0183 0.2913 0.16871 0.5227068 0.14566 0.471252941176471 0.42115 1 NA NA NA SLU7 ENSMLUG00000003091.2 ENSMLUT00000003095.2 8 587 93.6967632 0.052285107 0.3882 0.72181 0.72909 -3777.489826 -3775.221268 0.103461264 NA NA NA SLU7 ENSG00000164609.9 ENST00000520664.1 19 101 100 0.026989183 0.148 0.28531 0.28252 -552.051744 -550.971531 0.3395232 NA NA NA SLU7 0.98511652 1 NA NA NA 1587 529 0.08503 0.19183 0.0159 0.1867 0.054259 0.3601675 0.10063 0.7000125 0.15738 1 0.87 4.90547 1 498_I_0.966 0.0682714747350056 N 0.42113198115449 NA 0.0682714747350056 N 0.0639297790713213 NA 0.0682714747350056 N 0.911377510909477 NA 0.0682714747350056 Y 0.00148096234153464 5 469, 557, 476, 5, 15 0.0682714747350056 N 1 0 SLU7_sequences_filtered_longestORFs_mafft_mincov_prank SLU7_all 658 24 0.078443951323 0.069 N 0.9364 2 393, 576 N 0.4957027238701016 0 na Y 1.6099547138282536e-05 2 66, 626 N 0.056812437906525494 0 na Y 0.0008884785966213045 2 66, 626
+SMOC1 SMOC1 SMOC1 orf8 list25_COV_list3dataset2orf SPARC related modular calcium binding 1 OAS no 22 1308 436 0.0953 0.42631 0.0405 0.4253 1 1 0.9833 1 1 1 NA NA NA SMOC1 ENSMLUG00000011966.2 ENSMLUT00000011968.2 10 421 98.09976247 0.042088961 0.2562 0.50629 0.50745 -2637.844924 -2637.807862 0.963616389 NA NA NA SMOC1 ENSG00000198732.10 ENST00000381280.4 17 435 98.62068966 0.093384735 0.1563 0.40881 0.40871 -2715.53357 -2715.532979 0.999409175 NA NA NA SMOC1 1 1 NA NA NA 1011 337 0.10432 0.25769 0.0273 0.2617 0.77188 1 0.92916 1 0.95673 1 NA NA NA 0.127051224703774 N 1 NA 0.127051224703774 N 0.982346678336246 NA 0.127051224703774 N 0.999993982882101 NA 0.127051224703774 N 0.997356622592606 NA 0.127051224703774 N 1 0 SMOC1_sequences_filtered_longestORFs_mafft_mincov_prank SMOC1_all 1158 24 0.098002371610 0.087 Y 0.0000 2 150, 1135 N 0.7558380802197857 0 na Y 0.00012900450325755493 5 148, 150, 340, 753, 989 N 0.8411376148448129 0 na N 0.06815300690157228 0 na
+SNIP1 SNIP1 SNIP1 N list26_COV_list4dataset2nonOrf Smad nuclear interacting protein 1 PML1|PMRED no 24 1194 398 0.16858 0.42404 0.0573 0.3397 0.045868 0.215355853658537 0.089309 0.337097696078431 0.13727 0.694036538461539 3.401 3.00912 4 57_T_0.938,61_G_0.922,153_T_0.951,221_A_0.938 NA NA NA NA NA NA NA NA NA NA NA NA NA SNIP1 ENSG00000163877.10 ENST00000468040.2 8 69 84.05797101 0.432387306 1.736 57.02687 47.24559 -750.072181 -749.727467 0.708422933 NA NA NA NA NA NA NA NA 849 283 0.13566 0.21434 0.0284 0.209 0.32741 1 0.56139 1 0.64496 1 NA NA NA 0.159357120754518 N 0.443682084020643 NA 0.159357120754518 N 0.373542683930643 NA 0.159357120754518 N 0.999965749028842 NA 0.159357120754518 N 0.2337599424833 NA 0.159357120754518 N 0.6209 1 57 SNIP1_sequences_filtered_longestORFs_mafft_mincov_prank SNIP1_all 638 24 0.173217897527 0.170 N 0.9336 9 158, 193, 374, 383, 416, 423, 444, 462, 606 N 0.999997989455753 0 na N 0.9999105327517296 0 na N 1.0 0 na N 0.9579113900673513 0 na
+SPG20 SPART SPG20 nsp9 list24_COV_list2nonOrf spartin SPG20|TAHCCP1 no 24 2001 667 0.10045 0.46066 0.0459 0.4567 0.21719 0.601569424460432 0.23827 0.650595390070922 0.56517 1 NA NA NA SPART ENSMLUG00000012067.2 ENSMLUT00000012066.2 10 625 95.04 0.141161772 1.9595 1.80094 1.81677 -5615.301761 -5613.401915 0.149591655 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SPG20 1 1 NA NA NA 1722 574 0.14587 0.31945 0.0431 0.2957 0.10234 0.547234722222222 0.16323 0.910776086956522 0.25922 1 NA NA NA 0.108015846657283 N 0.565109365110704 NA 0.108015846657283 N 0.230438330264998 NA 0.108015846657283 N 0.789268408294212 NA 0.108015846657283 N 0.245986413846994 NA 0.108015846657283 N 1 2 161, 623 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
+SRP19 SRP19 SRP19 nsp8 list24_COV_list2nonOrf signal recognition particle 19 - no 24 435 145 0.07161 0.21106 0.018 0.251 0.85759 1 0.97637 1 0.98377 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRP19 1 1 NA NA NA 381 127 0.14093 0.09824 0.0137 0.0975 1 1 1 1 0.99998 1 NA NA NA 0.098217864970153 N 0.983685546074294 NA 0.098217864970153 N 0.945967562150239 NA 0.098217864970153 N 0.99999491673937 NA 0.098217864970153 N 0.707981055290438 NA 0.098217864970153 N 1 0 SRP19_sequences_filtered_longestORFs_mafft_mincov_prank SRP19_all 997 24 0.246470105804 0.356 Y 0.0000 9 219, 232, 433, 435, 452, 490, 493, 498, 557 N 0.9999993984813036 0 na N 0.8240632557492455 0 na N 1.0 0 na N 0.20351816809027615 0 na
+SRP54 SRP54 SRP54 nsp8 list24_COV_list2nonOrf signal recognition particle 54 - no 24 1515 505 1e-04 0.1979 0 0.2624 1 1 1 1 0.99785 1 NA NA NA SRP54 ENSMLUG00000008958.2 ENSMLUT00000008994.2 10 505 60.59405941 0.017058519 0.2085 50.34695 50.34695 -2571.565569 -2571.566848 0.998721818 NA NA NA SRP54 ENSG00000100883.11 ENST00000630962.1 18 54 94.44444444 0.176513031 0.2524 0.88567 1.07571 -330.698886 -327.498447 0.040744313 -330.479792 0.014611731 3 L32, C36, T37 SRP54 0.995212721 1 NA NA NA 1395 465 1e-04 0.11791 0 0.1664 1 1 1 1 0.99856 1 NA NA NA 0.001 N 0.9978712689683 NA 0.001 N 0.997856301011903 NA 0.001 N 0.999999999995453 NA 0.001 N 0.99974813436059 NA 0.001 N 1 0 SRP54_sequences_filtered_longestORFs_mafft_mincov_prank SRP54_all 734 24 0.004569972829 0.004 N 0.4180 0 na N 0.9999999999345164 0 na N 0.9999985695186524 0 na N 0.9990004998331715 0 na N 0.9801986733067731 0 na
+SRP72 SRP72 SRP72 nsp8 list24_COV_list2nonOrf signal recognition particle 72 BMFF|BMFS1|HEL103 no 24 2016 672 0.10809 0.29053 0.0293 0.2714 1 1 1 1 0.99947 1 NA NA NA SRP72 ENSMLUG00000007344.2 ENSMLUT00000007361.2 11 676 97.18934911 0.050821197 0.2715 0.50612 0.50653 -4309.948669 -4308.540031 0.244476033 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRP72 0.622236978 1 NA NA NA 1767 589 0.11538 0.20629 0.0229 0.1988 1 1 1 1 0.99971 1 NA NA NA 0.117245084509441 N 0.999466142552836 NA 0.117245084509441 N 0.999495127491063 NA 0.117245084509441 N 0.999999795120423 NA 0.117245084509441 N 0.962682683879416 NA 0.117245084509441 N 1 0 SRP72_sequences_filtered_longestORFs_mafft_mincov_prank SRP72_all 1139 23 0.106194110530 0.113 Y 0.0000 2 771, 885 N 0.9623151432908147 0 na N 0.096522337886414 0 na N 0.18768317070702073 0 na na na 0 na
+STC2 STC2 STC2 orf8 list23_COV_list1orf stanniocalcin 2 STC-2|STCRP no 23 909 303 0.17486 0.54238 0.0883 0.505 1 1 1 1 1 1 NA NA NA STC2 ENSMLUG00000016389.2 ENSMLUT00000016385.2 10 303 98.67986799 0.204277098 0.585 1.68281 1.69703 -3126.652494 -3126.533313 0.887647122 NA NA NA STC2 ENSG00000113739.10 ENST00000518455.1 19 53 100 0.174638631 0.1251 0.21928 0.21954 -271.119848 -270.942741 0.837690147 NA NA NA STC2 0.650541589 1 NA NA NA 624 208 0.2661 0.35986 0.0757 0.2844 1 1 0.99992 1 1 1 NA NA NA 0.20725496336538 N 1 NA 0.20725496336538 N 0.999935002112277 NA 0.20725496336538 N 0.999995651650256 NA 0.20725496336538 N 0.999949112171798 NA 0.20725496336538 N 1 1 19 STC2_sequences_filtered_longestORFs_mafft_mincov_prank STC2_all 317 24 0.163241047367 0.131 N 1.0000 0 na N 0.9999976125915359 0 na N 0.9998393244630842 0 na N 1.0 0 na N 0.9990004998331715 0 na
+STOM STOM STOM M list26_COV_list4dataset2nonOrf stomatin BND7|EPB7|EPB72 no 24 867 289 0.16126 0.34963 0.0454 0.2814 0.011191 0.0812931132075472 0.034571 0.179862635135135 0.036725 0.27517875 0.656 8.03423 2 8_A_0.993,268_V_0.930 STOM ENSMLUG00000000077.2 ENSMLUT00000000077.2 15 280 85 0.143064561 0.5232 1.77166 1.77816 -2767.552917 -2752.97994 4.69e-07 -2759.929493 0.00019289 4 I19, S12, S166, D14 NA NA NA NA NA NA NA NA NA NA NA NA NA STOM 0.049087394 0.653548123 NA NA NA 711 237 0.19334 0.203 0.0305 0.1579 0.28055 1 0.44112 1 0.55867 1 NA NA NA 0.147798585238223 N 0.215593411353314 NA 0.147798585238223 N 0.198724666047514 NA 0.147798585238223 N 0.310882894548904 NA 0.147798585238223 Y 0.00707235914267792 2 8, 268 0.147798585238223 N 0.1301 1 8 STOM_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank STOM_all_part1 600 24 0.215952729448 0.216 Y 0.0000 6 26, 31, 122, 363, 365, 534 N 0.2333523733982205 0 na Y 0.006072382696255782 2 26, 93 N 0.15107180883632135 0 na Y 0.0034790361219914244 2 26, 93
+STOML2 STOML2 STOML2 orf3b list23_COV_list1orf stomatin like 2 HSPC108|SLP-2 no 22 1071 357 0.09191 0.34197 0.0287 0.3118 1 1 1 1 1 1 NA NA NA STOML2 ENSMLUG00000006166.2 ENSMLUT00000006174.2 12 357 99.15966387 0.068343149 0.3235 0.75741 0.75764 -2702.938036 -2702.932391 0.994370903 NA NA NA STOML2 ENSG00000165283.15 ENST00000619795.4 18 311 99.03536977 0.075839176 0.1482 0.26471 0.26471 -1729.466179 -1729.466189 0.99999 NA NA NA STOML2 0.998045592 1 NA NA NA 807 269 0.18347 0.20681 0.0295 0.1606 1 1 1 1 1 1 NA NA NA 0.0922449601470126 N 0.999991000040636 NA 0.0922449601470126 N 0.999994000018242 NA 0.0922449601470126 N 0.999995772530224 NA 0.0922449601470126 N 0.999999851379027 NA 0.0922449601470126 N 1 0 STOML2_sequences_filtered_longestORFs_mafft_mincov_prank STOML2_all 628 24 0.103458535556 0.101 N 1.0000 1 318 N 0.9999990309684256 0 na N 0.3767316233019632 0 na N 0.9464851479532084 0 na N 0.3109882962958908 0 na
+SUN2 SUN2 SUN2 orf3a list25_COV_list3dataset2orf Sad1 and UNC84 domain containing 2 UNC84B no 24 2241 747 0.13437 0.69299 0.0913 0.6793 1 1 1 1 1 1 NA NA NA SUN2 ENSMLUG00000003774.2 ENSMLUT00000003780.2 10 756 93.12169312 0.211219405 0.3524 1.34381 1.36231 -6792.477488 -6791.727373 0.472312234 NA NA NA SUN2 ENSG00000100242.15 ENST00000405510.5 17 718 95.68245125 0.13547888 0.2157 0.53883 0.53883 -4701.790563 -4701.790571 0.999992 NA NA NA SUN2 1 1 NA NA NA 1560 520 0.15132 0.27627 0.0417 0.2753 0.94003 1 0.99049 1 1 1 NA NA NA 0.192822278635483 N 1 NA 0.192822278635483 N 0.999983000144201 NA 0.192822278635483 N 0.999999571141508 NA 0.192822278635483 N 0.0972786227511051 NA 0.192822278635483 N 0.3748 7 80, 128, 433, 469, 512, 707, 708 SUN2_sequences_filtered_longestORFs_mafft_mincov_prank SUN2_all 1705 24 0.152096786573 0.130 N 0.9854 14 784, 1149, 1155, 1166, 1296, 1298, 1310, 1332, 1358, 1363, 1405, 1579, 1594, 1602 N 0.9999996579918519 0 na N 0.14204123141551406 0 na N 0.9990004998331715 0 na N 0.25233442195527483 0 na
+TAPT1 TAPT1 TAPT1 orf9c list24_COV_list2nonOrf transmembrane anterior posterior transformation 1 CMVFR|OCLSBG no 24 1704 568 0.1727 0.3442 0.048 0.278 0.21717 0.601569424460432 0.35473 0.812922916666667 0.46634 1 NA NA NA TAPT1 ENSMLUG00000009395.2 ENSMLUT00000009399.2 10 501 98.20359281 0.039818834 0.5346 0.97227 0.97318 -3846.27272 -3845.726577 0.579179403 NA NA NA TAPT1 ENSG00000169762.16 ENST00000513833.1 19 51 94.11764706 0.050566703 0.0519 0.12196 0.20008 -225.402719 -221.92609 0.030911438 -225.388139 0.008504187 NA TAPT1 1 1 NA NA NA 1419 473 0.11404 0.22831 0.0235 0.2063 1 1 1 1 1 1 NA NA NA 0.177345880920641 N 0.46625620490759 NA 0.177345880920641 N 0.267773715575114 NA 0.177345880920641 N 0.895326247649002 NA 0.177345880920641 N 0.0500399408484156 NA 0.177345880920641 Y 0.0022 3 22, 24, 472 TAPT1_sequences_filtered_longestORFs_mafft_mincov_prank TAPT1_all 1355 24 0.059510938125 0.135 Y 0.0453 2 410, 414 N 0.9999992852647491 0 na Y 1.311118094882085e-05 8 1097, 1240, 1241, 1245, 1259, 1263, 1273, 1276 N 0.8017166802898278 0 na N 0.39455371037148623 0 na
+TARS2 TARS2 TARS2 M list26_COV_list4dataset2nonOrf threonyl-tRNA synthetase 2, mitochondrial COXPD21|TARSL1|thrRS no 24 2160 720 0.30484 0.52026 0.0988 0.3242 0.034329 0.171645 0.078453 0.305647222222222 0.13216 0.686583333333333 1.215 4.31287 2 173_I_0.958,638_R_0.901 TARS2 ENSMLUG00000013123.2 ENSMLUT00000013127.2 4 722 99.58448753 0.129341991 0.2712 0.32527 0.32527 -3826.701492 -3826.701494 0.999998 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TARS2 1 1 NA NA NA 1644 548 0.31786 0.29867 0.058 0.1825 0.8519 1 0.94738 1 0.98258 1 NA NA NA 0.28352009061066 na NA NA 0.28352009061066 na NA NA 0.28352009061066 N 0.0642871064894599 NA 0.28352009061066 Y 0.0180467327955648 1 173 0.28352009061066 Y 0 0 TARS2_sequences_filtered_longestORFs_mafft_mincov_prank TARS2_all 1199 22 0.256722988523 0.272 Y 0.0003 15 231, 319, 459, 469, 509, 556, 623, 680, 727, 929, 930, 973, 1020, 1026, 1124 N 0.9999989787471107 0 na N 0.6227803328213158 0 na N 0.9940179640527202 0 na N 0.5521144043074049 0 na
+TBCA TBCA TBCA nsp11 list26_COV_list4dataset2nonOrf tubulin folding cofactor A - no 24 327 109 0.25534 0.36767 0.0685 0.2681 1 1 1 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 264 88 0.22215 0.28046 0.048 0.2161 1 1 1 1 1 1 NA NA NA 0.271164906335534 N 1 NA 0.271164906335534 N 0.999999000000503 NA 0.271164906335534 N 0.999998490353053 NA 0.271164906335534 N 0.997334960277896 NA 0.271164906335534 N 1 0 TBCA_sequences_filtered_longestORFs_mafft_mincov_prank TBCA_all 508 24 0.337281001315 0.401 Y 0.0001 5 6, 49, 232, 242, 448 N 0.9547514305065781 0 na N 0.3724648352353087 0 na N 0.2546156820248195 0 na N 0.08874395194919735 0 na
+TBK1 TBK1 TBK1 nsp13 list26_COV_list4dataset2nonOrf TANK binding kinase 1 FTDALS4|IIAE8|NAK|T2K no 24 2190 730 0.09206 0.30576 0.0308 0.3344 0.2918 0.706559748427673 0.45169 0.961245027624309 0.68512 1 NA NA NA TBK1 ENSMLUG00000009717.2 ENSMLUT00000009747.2 11 730 99.31506849 0.132077656 0.2028 0.56124 0.56429 -4901.954784 -4900.946517 0.364850718 NA NA NA TBK1 ENSG00000183735.9 ENST00000539810.1 18 48 100 NA 0.198 0.1811 0.1811 -221.309111 -221.309323 0.999788022 NA NA NA TBK1 1 1 NA NA NA 1941 647 0.09834 0.20818 0.0224 0.2276 0.11095 0.562049342105263 0.21216 1 0.3253 1 NA NA NA 0.102186835757932 N 0.684824279435225 NA 0.102186835757932 N 0.387961954336819 NA 0.102186835757932 N 0.617716190807908 NA 0.102186835757932 Y 0.0119874357780535 1 346 0.102186835757932 Y 1e-04 1 608 TBK1_sequences_filtered_longestORFs_mafft_mincov_prank TBK1_all 1010 24 0.071557832345 0.054 Y 0.0000 6 589, 599, 637, 697, 702, 735 N 0.9998866560273815 0 na Y 0.0074795279294670725 1 441 N 1.0 0 na N 0.2644772612998432 0 na
+TBKBP1 TBKBP1 TBKBP1 nsp13 list26_COV_list4dataset2nonOrf TBK1 binding protein 1 ProSAPiP2|SINTBAD no 24 1851 617 0.06496 0.63331 0.0555 0.855 1 1 0.99446 1 1 1 NA NA NA TBKBP1 ENSMLUG00000014537.2 ENSMLUT00000014538.2 8 385 93.76623377 0.087125125 0.4561 0.86161 0.86161 -2663.440804 -2663.440799 0.999995 NA NA NA TBKBP1 ENSG00000198933.9 ENST00000622396.1 14 223 98.65470852 0.126745863 0.1225 0.21815 0.21824 -1170.30195 -1170.296198 0.994264511 NA NA NA TBKBP1 0.544718639 1 NA NA NA 1167 389 0.06461 0.26627 0.0229 0.3542 0.87415 1 0.98754 1 1 1 NA NA NA 0.101727458391362 na NA NA 0.101727458391362 na NA NA 0.101727458391362 N 0.999999124405278 NA 0.101727458391362 Y 0.0067989394292147 2 472, 562 0.101727458391362 Y 0 0 TBKBP1_sequences_filtered_longestORFs_mafft_mincov_prank TBKBP1_all 1961 21 0.085497667869 0.061 Y 0.0000 7 210, 1584, 1586, 1592, 1640, 1643, 1932 N 0.9999992271617233 0 na Y 0.007205789252335191 4 58, 1586, 1643, 1647 N 0.0626620047421258 0 na N 0.05698313113194283 0 na
+TCEB1 ELOC TCEB1 orf10 list25_COV_list3dataset2orf elongin C SIII|TCEB1 no 22 342 114 1e-04 0.15603 0 0.1838 0.99483 1 1 1 0.99964 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 300 100 1e-04 0.09218 0 0.1258 1 1 1 1 0.99975 1 NA NA NA 0.001 N 0.999640064792224 NA 0.001 N 0.999637065876536 NA 0.001 N 0.99999999998397 NA 0.001 N 0.999992569163834 NA 0.001 N 1 0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
+TCEB2 ELOB TCEB2 orf10 list25_COV_list3dataset2orf elongin B SIII|TCEB2 no 22 354 118 0.18231 0.74417 0.128 0.7021 1 1 1 1 0.99981 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ELOB ENSG00000103363.14 ENST00000572954.1 16 67 94.02985075 0.564142855 0.2216 1.44523 1.9231 -606.091885 -596.030799 4.27e-05 -602.771538 0.00024093 1 M1 TCEB2 1 1 NA NA NA 207 69 0.18938 0.28695 0.0511 0.2698 1 1 1 1 0.99996 1 NA NA NA 0.300324653429126 N 0.999805019011302 NA 0.300324653429126 N 0.999802019600638 NA 0.300324653429126 N 0.99999991769619 NA 0.300324653429126 N 0.994069050817825 NA 0.300324653429126 N 1 0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
+TCF12 TCF12 TCF12 nsp12 list26_COV_list4dataset2nonOrf transcription factor 12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 no 23 2121 707 0.09329 0.23129 0.0205 0.2194 1 1 1 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TCF12 ENSG00000140262.17 ENST00000560948.1 19 44 93.18181818 0.195051608 0.0652 50.1049 50.10237 -293.114675 -291.985703 0.323365505 NA NA NA TCF12 0.867226426 1 NA NA NA 1911 637 0.1229 0.17108 0.0194 0.1579 1 1 0.99581 1 1 1 NA NA NA 0.101614474331695 N 1 NA 0.101614474331695 N 0.999999000000616 NA 0.101614474331695 N 0.999998607159856 NA 0.101614474331695 N 0.344725892209112 NA 0.101614474331695 N 0.0922 2 263, 482 TCF12_sequences_filtered_longestORFs_mafft_mincov_prank TCF12_all 1784 23 0.089163951675 0.087 N 1.0000 1 1456 N 0.5717787679723109 0 na Y 0.0005495687132345552 2 939, 1456 N 0.35879646540608207 0 na na na 0 na
+THTPA THTPA THTPA orf10 list25_COV_list3dataset2orf thiamine triphosphatase THTP|THTPASE no 24 693 231 0.40061 0.60108 0.1372 0.3424 1 1 1 1 1 1 NA NA NA THTPA ENSMLUG00000016741.2 ENSMLUT00000016739.2 15 231 98.7012987 0.307948843 0.3508 1.57567 1.57684 -2692.924316 -2692.665785 0.772185093 NA NA NA THTPA ENSG00000259431.5 ENST00000556545.1 19 60 95 0.332747784 0.2145 0.75211 0.74901 -446.76741 -446.742424 0.975323566 NA NA NA NA NA NA NA NA 570 190 0.46354 0.38389 0.0937 0.202 0.37349 1 0.64589 1 0.68145 1 NA NA NA 0.430571823950901 N 1 NA 0.430571823950901 N 0.990250834266346 NA 0.430571823950901 N 0.999999950762459 NA 0.430571823950901 N 0.998093730671487 NA 0.430571823950901 N 1 0 THTPA_sequences_filtered_longestORFs_mafft_mincov_prank THTPA_all 373 24 0.443083285519 0.477 N 0.1223 4 163, 210, 292, 342 N 0.9766896697822607 0 na N 0.9686115036684789 0 na N 0.4533911773339794 0 na N 0.2813938470598014 0 na
+TIMM10 TIMM10 TIMM10 nsp4 list24_COV_list2nonOrf translocase of inner mitochondrial membrane 10 TIM10|TIM10A|TIMM10A no 24 273 91 1e-04 0.21377 0 0.3674 1 1 1 1 0.9995 1 NA NA NA TIMM10 ENSMLUG00000007883.1 ENSMLUT00000007868.1 15 91 96.7032967 0.014279045 0.3297 0.54196 0.54197 -562.40929 -562.409426 0.999864009 NA NA NA TIMM10 ENSG00000134809.8 ENST00000525158.1 19 91 96.7032967 0.341568474 0.1794 0.51918 0.53555 -583.570719 -583.285201 0.751624812 NA NA NA NA NA NA NA NA 231 77 1e-04 0.04889 0 0.1466 1 1 1 1 0.99976 1 NA NA NA 0.001 N 0.681183195135185 NA 0.001 N 0.99949412799638 NA 0.001 N 0.999999999868123 NA 0.001 N 0.999996405064773 NA 0.001 N 1 0 TIMM10_sequences_filtered_longestORFs_mafft_mincov_prank TIMM10_all 155 24 0.144848899100 0.092 N 0.8126 0 na N 0.9999990566677655 0 na N 0.9999284525655219 0 na N 0.1148647419259746 0 na N 0.6596802704842788 0 na
+TIMM10B TIMM10B TIMM10B nsp4 list24_COV_list2nonOrf translocase of inner mitochondrial membrane 10B FXC1|TIM10B|Tim9b no 24 318 106 0.18622 0.25396 0.04 0.2149 1 1 0.98893 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TIMM10B 0.993324497 1 NA NA NA 243 81 0.13293 0.21534 0.0283 0.2132 1 1 1 1 1 1 NA NA NA 0.234583255066643 N 1 NA 0.234583255066643 N 0.984874556231404 NA 0.234583255066643 N 0.999999962702874 NA 0.234583255066643 N 0.996058144020349 NA 0.234583255066643 N 0.5051 0 TIMM10B_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank TIMM10B_all_part1 247 24 0.256599587009 0.177 N 0.8037 1 117 N 0.8704886074406261 0 na N 0.6434962756108793 0 na N 0.9920319148370227 0 na N 0.38558253897972294 0 na
+TIMM8B TIMM8B TIMM8B orf10 list25_COV_list3dataset2orf translocase of inner mitochondrial membrane 8 homolog B DDP2|TIM8B no 23 252 84 0.0408 0.44668 0.0215 0.5263 1 1 1 1 1 1 NA NA NA TIMM8B ENSMLUG00000012225.1 ENSMLUT00000012226.1 12 84 96.42857143 0.153186519 0.4987 1.23336 1.23336 -763.084152 -763.084359 0.999793021 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TIMM8B 0.992182485 1 NA NA NA 192 64 0.02394 0.23213 0.007 0.294 1 1 1 1 1 1 NA NA NA 0.0414061575992024 N 0.9996810508751 NA 0.0414061575992024 N 0.999683050239196 NA 0.0414061575992024 N 0.99999999834813 NA 0.0414061575992024 N 0.988331275895067 NA 0.0414061575992024 N 0.8827 0 TIMM8B_sequences_filtered_longestORFs_mafft_mincov_prank TIMM8B_all 207 22 0.090266411477 0.136 Y 0.0011 1 85 N 0.9999999866154213 0 na N 0.9955822853216804 0 na Y 0.019565254802910916 0 Y 0.00012279429512095677 1 85
+TIMM9 TIMM9 TIMM9 nsp4 list24_COV_list2nonOrf translocase of inner mitochondrial membrane 9 TIM9|TIM9A no 22 270 90 1e-04 0.08744 0 0.149 1 1 1 1 0.99973 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TIMM9 ENSG00000100575.13 ENST00000555097.1 17 44 100 NA 0.1194 0.07839 0.07839 -186.634969 -186.635077 0.999892006 NA NA NA TIMM9 0.979349576 1 NA NA NA 258 86 1e-04 0.06635 0 0.114 1 1 1 1 0.9998 1 NA NA NA 0.001 N 0.999666055771781 NA 0.001 N 0.999639065152662 NA 0.001 N 0.999999999999602 NA 0.001 N 0.999923283550191 NA 0.001 N 1 0 TIMM9_sequences_filtered_longestORFs_mafft_mincov_prank TIMM9_all 289 21 0.126085640961 0.264 N 1.0000 3 73, 125, 196 N 0.9999999788851712 0 na N 0.9566142032001991 0 na N 1.0 0 na N 0.7385990963704006 0 na
+TLE1 TLE1 TLE1 nsp13 list26_COV_list4dataset2nonOrf transducin like enhancer of split 1 ESG|ESG1|GRG1 no 24 2343 781 0.00794 0.34901 0.0031 0.3879 1 1 1 1 0.99854 1 NA NA NA TLE1 ENSMLUG00000003088.2 ENSMLUT00000003094.2 4 771 98.70298314 0.022314958 0.3974 0.45031 0.45031 -4298.583177 -4298.583652 0.999525113 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TLE1 0.96270875 1 NA NA NA 1749 583 0.01766 0.12851 0.0025 0.1406 1 1 1 1 0.99981 1 NA NA NA 0.00896045754771501 N 0.998544060909797 NA 0.00896045754771501 N 0.99855204929331 NA 0.00896045754771501 N 0.999999999988177 NA 0.00896045754771501 N 0.999990975577723 NA 0.00896045754771501 N 1 0 TLE1_sequences_filtered_longestORFs_mafft_mincov_prank_part5_prank TLE1_all_part5 2038 24 na na Y 0.0000 5 703, 704, 831, 1725, 1865 na na 0 na na na 0 na na na 0 na na na 0 na
+TLE3 TLE3 TLE3 nsp13 list26_COV_list4dataset2nonOrf transducin like enhancer of split 3 ESG|ESG3|GRG3|HsT18976 no 23 2319 773 0.00491 0.33086 0.0023 0.4634 1 1 1 1 0.99863 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TLE3 ENSG00000140332.15 ENST00000627388.2 3 773 99.61190168 0.011459711 0.0814 0.0779 0.0779 -3328.83834 -3328.838424 0.999916004 NA NA NA TLE3 1 1 NA NA NA 1653 551 1e-04 0.12647 0 0.1908 0.99194 1 1 1 0.99811 1 NA NA NA 0.00715909035260506 N 0.99863393391905 NA 0.00715909035260506 N 0.998638927101076 NA 0.00715909035260506 N 0.999999999956344 NA 0.00715909035260506 N 0.999995289336948 NA 0.00715909035260506 N 1 0 TLE3_sequences_filtered_longestORFs_D1242gp2_prank TLE3_1242-2 5562 25 na na Y 0.0000 9 1195, 2212, 3825, 4772, 5086, 5243, 5327, 5363, 5425 na na 0 na na na 0 na na na 0 na na na 0 na
+TM2D3 TM2D3 TM2D3 orf8 list25_COV_list3dataset2orf TM2 domain containing 3 BLP2 no 24 744 248 0.15463 0.57108 0.0762 0.493 0.81998 1 0.86452 1 0.97514 1 NA NA NA TM2D3 ENSMLUG00000012867.2 ENSMLUT00000012868.2 7 168 77.97619048 0.125987331 1.0628 1.78587 1.78588 -1241.214775 -1241.214837 0.999938002 NA NA NA TM2D3 ENSG00000184277.12 ENST00000558677.5 6 21 90.47619048 0.392413606 0.0737 0.16384 0.16383 -93.941226 -93.941223 0.999997 NA NA NA TM2D3 0.987384863 1 NA NA NA 570 190 0.15692 0.3176 0.0442 0.2817 0.19703 0.89243 0.32898 1 0.43578 1 NA NA NA 0.163694461285809 N 0.975223113308782 NA 0.163694461285809 N 0.928194479245396 NA 0.163694461285809 N 0.983636812252895 NA 0.163694461285809 N 0.0654498007576458 NA 0.163694461285809 N 1 0 TM2D3_sequences_filtered_longestORFs_mafft_mincov_prank TM2D3_all 693 24 0.163507807652 0.163 N 0.1993 2 22, 408 N 0.6684045586679997 0 na Y 3.430580758022897e-05 10 3, 4, 7, 12, 13, 22, 335, 345, 399, 408 N 0.4061632932980087 0 na N 0.2253726555394879 0 na
+TMED5 TMED5 TMED5 orf9c list26_COV_list4dataset2nonOrf transmembrane p24 trafficking protein 5 CGI-100|p24g2|p28 no 24 690 230 0.20601 0.25994 0.0403 0.1956 1 1 1 1 1 1 NA NA NA TMED5 ENSMLUG00000005855.2 ENSMLUT00000005854.2 12 230 96.95652174 0.171524106 0.3374 0.7916 0.79264 -1789.058873 -1788.027614 0.356557772 NA NA NA TMED5 ENSG00000117500.12 ENST00000370280.1 18 163 98.1595092 0.121305926 0.1413 0.23614 0.23614 -862.837429 -862.837432 0.999997 NA NA NA TMED5 1 1 NA NA NA 618 206 0.24636 0.23169 0.0404 0.1639 1 1 1 1 0.99995 1 NA NA NA 0.19536953677736 N 0.999907004324487 NA 0.19536953677736 N 0.99999200003202 NA 0.19536953677736 N 0.999995599315886 NA 0.19536953677736 N 0.982982558122866 NA 0.19536953677736 N 1 0 TMED5_sequences_filtered_longestORFs_mafft_mincov_prank TMED5_all 828 24 0.142041245855 0.246 N 1.0000 0 na N 0.9999896184062906 0 na N 0.9996814693702539 0 na N 0.9960079893440856 0 na N 0.9821610323582721 0 na
+TMEM39B TMEM39B TMEM39B orf9c list24_COV_list2nonOrf transmembrane protein 39B - no 24 1479 493 0.02611 0.35618 0.0127 0.4876 0.79256 1 0.01562 0.103684482758621 0.54675 1 2.802 1.11455 1 27_S_0.931 TMEM39B ENSMLUG00000001098.2 ENSMLUT00000001096.2 14 493 97.76876268 0.045827183 0.2491 0.73561 0.75068 -3638.443569 -3637.831116 0.542019663 NA NA NA TMEM39B ENSG00000121775.17 ENST00000441402.5 15 194 97.42268041 0.284776497 0.1299 0.34659 0.35253 -1148.165807 -1146.539157 0.196587039 NA NA NA TMEM39B 0.801578622 1 NA NA NA 1119 373 0.04573 0.15903 0.0097 0.2125 0.050521 0.353647 0.013311 0.1507275 0.033776 0.382463529411765 1.547 3.9348 1 16_S_0.950 0.0307585587413331 N 0.546593990432852 NA 0.0307585587413331 Y 0.0052078144634919 0 0.0307585587413331 N 0.98836162121371 NA 0.0307585587413331 Y 0.000102329312698745 4 25, 402, 27, 223 0.0307585587413331 N 0.1057 2 25, 221 TMEM39B_sequences_filtered_longestORFs_mafft_mincov_prank TMEM39B_all 1232 24 0.031066125277 0.042 Y 0.0000 3 51, 277, 300 N 0.999999462436025 0 na Y 0.0012595106626096717 2 302, 512 Y 4.1185887075334635e-06 3 51, 176, 221 Y 5.997038937209627e-09 5 51, 176, 221, 276, 302
+TMEM97 TMEM97 TMEM97 orf9c list24_COV_list2nonOrf transmembrane protein 97 MAC30 no 24 531 177 0.17626 0.56778 0.0801 0.4544 1 1 1 1 1 1 NA NA NA TMEM97 ENSMLUG00000008705.2 ENSMLUT00000008690.2 5 177 96.04519774 0.308861546 0.3549 0.91347 0.92408 -1313.650608 -1313.522072 0.879381904 NA NA NA TMEM97 ENSG00000109084.13 ENST00000336687.6 19 70 90 0.127951045 0.3597 0.49482 0.49517 -404.504572 -404.521939 0.982782937 NA NA NA NA NA NA NA NA 414 138 0.22013 0.38439 0.0621 0.2823 1 1 0.99968 1 1 1 NA NA NA 0.185193347690359 N 1 NA 0.185193347690359 N 0.999999000000389 NA 0.185193347690359 N 0.999999937599343 NA 0.185193347690359 N 0.999999979298537 NA 0.185193347690359 N 0.9902 0 TMEM97_sequences_filtered_longestORFs_mafft_mincov_prank TMEM97_all 1035 24 0.167819929316 0.322 Y 0.0000 8 392, 458, 796, 808, 873, 881, 882, 1033 N 0.9999997544607897 0 na N 0.9999947415289641 0 na N 1.0 0 na N 0.9980019986669264 0 na
+TOMM70A TOMM70 TOMM70A orf9b list25_COV_list3dataset2orf translocase of outer mitochondrial membrane 70 TOMM70A|Tom70 no 24 1827 609 0.05298 0.33556 0.0185 0.3495 1 1 0.62948 1 1 1 NA NA NA TOMM70 ENSMLUG00000004351.2 ENSMLUT00000004349.2 7 625 82.56 0.033943485 0.4243 0.49252 0.49252 -3102.802866 -3102.803279 0.999587085 NA NA NA TOMM70 ENSG00000154174.7 ENST00000284320.5 17 609 99.50738916 0.051737723 0.143 0.27585 0.27572 -3384.838087 -3384.292878 0.579720609 NA NA NA TOMM70A 1 1 NA NA NA 1458 486 0.03332 0.18164 0.0067 0.2014 1 1 0.69563 1 1 1 NA NA NA 0.0582543321098358 N 1 NA 0.0582543321098358 N 0.33816207046642 NA 0.0582543321098358 N 0.999997284242504 NA 0.0582543321098358 Y 0.0128804753740479 5 16, 65, 56, 323, 68 0.0582543321098358 N 0.9993 0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
+TOR1A TOR1A TOR1A orf8 list25_COV_list3dataset2orf torsin family 1 member A DQ2|DYT1 no 24 999 333 0.07967 0.44641 0.0385 0.4838 1 1 1 1 1 1 NA NA NA TOR1A ENSMLUG00000006890.2 ENSMLUT00000006884.2 5 371 76.28032345 0.139303891 0.8003 1.48619 1.64303 -2351.61907 -2341.490297 3.99e-05 -2344.046035 0.023768091 3 S65, S75, N83 TOR1A ENSG00000136827.11 ENST00000351698.4 14 333 91.89189189 0.121829084 0.2238 0.34598 0.34943 -1839.341021 -1835.394373 0.019319352 -1838.736927 0.009722163 2 S57, E59 TOR1A 1 1 NA NA NA 759 253 0.12827 0.29153 0.0347 0.2703 0.21479 0.929147752808989 0.40056 1 0.46022 1 NA NA NA 0.0847737076417045 N 0.995232401250752 NA 0.0847737076417045 N 0.723980370161924 NA 0.0847737076417045 N 0.999999297988116 NA 0.0847737076417045 N 0.124339073433181 NA 0.0847737076417045 Y 0 2 50, 57 TOR1A_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank TOR1A_all_part1 507 23 0.099632009810 0.101 Y 0.0196 3 56, 408, 486 N 0.8947941317286731 0 na N 0.09775517975045724 0 na N 0.74081822068192 0 na N 0.055299025094692394 0 na
+TOR1AIP1 TOR1AIP1 TOR1AIP1 nsp7 list26_COV_list4dataset2nonOrf torsin 1A interacting protein 1 LAP1|LAP1B|LGMD2Y yes 24 1761 587 0.51702 0.62903 0.1643 0.3177 0.00082508 0.0105885266666667 0.0023145 0.0253382027027027 0.0037125 0.0473736290322581 3.658 4.14571 7 49_L_0.917,139_P_0.969,163_P_0.970,270_R_0.993,324_R_0.907,340_C_0.914,440_R_0.965 TOR1AIP1 ENSMLUG00000006221.2 ENSMLUT00000006225.2 3 598 93.47826087 0.359822155 0.3745 0.66845 0.70424 -3591.897486 -3589.380923 0.080736622 NA NA NA TOR1AIP1 ENSG00000143337.18 ENST00000447964.1 15 295 97.96610169 0.275693739 0.1852 0.49253 0.50872 -1980.718382 -1979.3108 0.244734336 NA NA NA NA NA NA NA NA 1326 442 0.6327 0.46197 0.1321 0.2088 0.00033621 0.00761416764705882 0.00090021 0.021661303125 0.0016147 0.03885371875 18.37 2.87933 7 24_P_0.955,72_P_0.990,88_P_0.990,120_Y_0.945,149_T_0.942,239_I_0.943,349_F_0.950 0.538167421835242 Y 0.00371229869460018 1 270 0.538167421835242 Y 0.00138385665517619 4 139, 163, 270, 440 0.538167421835242 Y 0.0214008255942204 1 270 0.538167421835242 Y 0.000536177723697717 1 270 0.538167421835242 N 0.543 11 6, 49, 103, 113, 139, 195, 237, 324, 359, 440, 454 TOR1AIP1_sequences_filtered_longestORFs_mafft_mincov_prank TOR1AIP1_all 1425 24 0.577187484977 0.581 Y 0.0005 27 144, 184, 187, 237, 239, 385, 409, 430, 457, 731, 734, 838, 848, 853, 857, 980, 1040, 1056, 1058, 1060, 1061, 1077, 1078, 1084, 1086, 1096, 1107 Y 1.2484315979276648e-11 1 1040 Y 2.502738548107742e-12 2 848, 1040 Y 1.7539158731449243e-10 3 848, 1040, 1182 Y 4.7170863106397096e-14 5 838, 848, 1040, 1093, 1182
+TRIM59 TRIM59 TRIM59 orf3a list23_COV_list1orf tripartite motif containing 59 IFT80L|MRF1|RNF104|TRIM57|TSBF1 no 22 1212 404 0.41501 0.51665 0.1273 0.3068 0.069322 0.286978172043011 0.13013 0.431896982758621 0.19086 0.886554166666667 9.802 2.27273 1 162_H_0.953 TRIM59 ENSMLUG00000026537.1 ENSMLUT00000029823.1 15 403 99.00744417 0.265264911 0.2441 1.15001 1.15339 -3946.982058 -3944.94036 0.129808109 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1074 358 0.4239 0.38412 0.095 0.2242 0.75049 1 0.87123 1 0.95092 1 NA NA NA 0.432764803157461 N 0.190971896596367 NA 0.432764803157461 N 0.132516117426379 NA 0.432764803157461 N 0.332898271641577 NA 0.432764803157461 N 0.252452652051873 NA 0.432764803157461 Y 0.0028 4 195, 201, 367, 394 TRIM59_sequences_filtered_longestORFs_mafft_mincov_prank TRIM59_all 2041 23 0.306210926693 0.294 Y 0.0010 8 522, 527, 555, 561, 607, 1946, 1997, 2022 N 0.22440658792179846 0 na Y 0.029867764315102553 2 522, 562 N 0.2553806759881334 0 na Y 0.031335614024921986 0
+TRMT1 TRMT1 TRMT1 nsp5_C145A list24_COV_list2nonOrf tRNA methyltransferase 1 TRM1 yes 23 1995 665 0.32049 1.20036 0.2581 0.8055 6.4958e-06 0.000208406916666667 3.8427e-08 3.69859875e-06 5.857e-07 3.75824166666667e-05 0.631 16.61671 3 2_S_0.997,3_H_0.995,5_R_0.976 TRMT1 ENSMLUG00000012809.2 ENSMLUT00000012821.2 7 672 93.00595238 0.200525465 0.3188 0.95425 0.96418 -4876.393271 -4874.829685 0.209383873 NA NA NA TRMT1 ENSG00000104907.12 ENST00000437766.5 4 660 96.21212121 0.244542375 0.2106 0.37666 0.38396 -3617.799544 -3616.444316 0.257888489 NA NA NA TRMT1 1 1 NA NA NA 1263 421 0.36782 0.71903 0.1682 0.4573 7.0108e-13 1.349579e-10 5.3878e-13 1.0371515e-10 4.8468e-12 9.33009e-10 0.799 38.7804 3 2_S_1.000,3_H_1.000,4_R_0.999 0.388274551738183 na NA NA 0.388274551738183 na NA NA 0.388274551738183 Y 8.64269400707072e-05 2 2, 3 0.388274551738183 Y 1.21129474876273e-05 3 2, 3, 5 0.388274551738183 na NA 0 TRMT1_sequences_filtered_longestORFs_mafft_mincov_prank TRMT1_all 1068 23 0.221247278753 0.201 Y 0.0002 0 na N 0.9999999638539527 0 na Y 0.004488704483443964 4 369, 969, 990, 1047 N 0.7025771933778344 0 na Y 2.653621909059236e-05 0
+TUBGCP2 TUBGCP2 TUBGCP2 M list26_COV_list4dataset2nonOrf tubulin gamma complex associated protein 2 ALP4|GCP-2|GCP2|Grip103|SPBC97|SPC97|Spc97p|h103p|hGCP2|hSpc97 no 24 2796 932 0.04985 0.71657 0.049 0.9833 0.27049 0.68064477124183 0.45191 0.961245027624309 1 1 NA NA NA TUBGCP2 ENSMLUG00000005342.2 ENSMLUT00000005349.2 8 909 92.29922992 0.075141747 0.4609 0.97117 0.97118 -6124.705355 -6124.707071 0.998285471 NA NA NA TUBGCP2 ENSG00000130640.13 ENST00000368563.6 14 903 97.89590255 0.084994374 0.2728 0.63111 0.63111 -6250.382718 -6250.382727 0.999991 NA NA NA TUBGCP2 0.982777377 1 NA NA NA 1845 615 0.04666 0.29126 0.02 0.4283 1 1 1 1 1 1 NA NA NA 0.0732549269260622 na NA NA 0.0732549269260622 na NA NA 0.0732549269260622 N 0.999999663899927 NA 0.0732549269260622 Y 0.000150392613067358 4 830, 910, 197, 262 0.0732549269260622 Y 0 0 TUBGCP2_sequences_filtered_longestORFs_mafft_mincov_prank TUBGCP2_all 1664 24 0.070451478024 0.061 Y 0.0000 5 444, 445, 1331, 1463, 1613 N 0.9999999509855128 0 na Y 0.00013629384562998488 2 238, 1550 Y 9.844623464290293e-05 0 Y 0.0064608137605138396 1 238
+TUBGCP3 TUBGCP3 TUBGCP3 M list26_COV_list4dataset2nonOrf tubulin gamma complex associated protein 3 104p|ALP6|GCP3|Grip104|SPBC98|Spc98|Spc98p no 24 2724 908 0.06191 0.48631 0.0295 0.4765 1 1 1 1 1 1 NA NA NA TUBGCP3 ENSMLUG00000003007.2 ENSMLUT00000003016.2 3 907 99.44873208 0.060376747 0.3149 0.32284 0.32287 -4783.799705 -4783.798937 0.999232295 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TUBGCP3 1 1 NA NA NA 2145 715 0.08588 0.30473 0.0254 0.2959 0.99403 1 0.94154 1 1 1 NA NA NA 0.0645931846537695 N 1 NA 0.0645931846537695 N 0.999845012012157 NA 0.0645931846537695 N 0.99999896902826 NA 0.0645931846537695 N 0.0851085862013008 NA 0.0645931846537695 N 0.6092 2 73, 186 TUBGCP3_sequences_filtered_longestORFs_mafft_mincov_prank TUBGCP3_all 1850 24 0.059328763974 0.060 Y 0.0094 8 400, 668, 696, 781, 803, 1013, 1453, 1672 N 0.9999996171337266 0 na N 0.6866955291166233 0 na N 1.0 0 na N 1.0 0 na
+TYSND1 TYSND1 TYSND1 nsp12 list24_COV_list2nonOrf trypsin domain containing 1 NET41 no 24 1701 567 0.19443 0.82089 0.1392 0.716 1 1 1 1 1 1 NA NA NA TYSND1 ENSMLUG00000024592.1 ENSMLUT00000029504.1 7 501 94.21157685 0.250696654 0.4319 1.40747 1.54659 -4264.492143 -4259.43093 0.006337867 -4263.3958 0.004862878 NA TYSND1 ENSG00000156521.13 ENST00000287078.6 15 567 95.23809524 0.264137739 0.2301 0.68808 0.68879 -4116.047002 -4116.042735 0.995742091 NA NA NA TYSND1 0.97075562 1 NA NA NA 921 307 0.29466 0.41853 0.0862 0.2927 0.75011 1 0.94656 1 0.9368 1 NA NA NA 0.253669914529644 na NA NA 0.253669914529644 na NA NA 0.253669914529644 N 0.999999673202236 NA 0.253669914529644 N 0.999966396118734 NA 0.253669914529644 na NA 0 TYSND1_sequences_filtered_longestORFs_mafft_mincov_prank TYSND1_all 2653 21 na na N 0.8539 9 178, 192, 195, 255, 528, 532, 652, 1640, 2313 na na 0 na na na 0 na na na 0 na na na 0 na
+UBAP2 UBAP2 UBAP2 nsp12 list24_COV_list2nonOrf ubiquitin associated protein 2 UBAP-2 no 24 3384 1128 0.37831 0.50461 0.1092 0.2886 0.015438 0.0990605 0.02833 0.165258333333333 0.061103 0.398722966101695 1.884 3.66493 2 25_M_0.958,469_T_0.905 UBAP2 ENSMLUG00000006809.2 ENSMLUT00000006834.2 8 1130 95.13274336 0.179086694 0.1872 0.49318 0.49317 -7073.846561 -7073.846562 0.999999 NA NA NA UBAP2 ENSG00000137073.21 ENST00000379239.8 17 359 98.05013928 0.238570131 0.1826 0.42619 0.42767 -2270.060113 -2269.804598 0.774517519 NA NA NA UBAP2 1 1 NA NA NA 2850 950 0.48524 0.31756 0.0793 0.1634 1 1 0.99885 1 1 1 NA NA NA 0.379495071364045 N 0.0611035691266039 NA 0.379495071364045 Y 0.0282564649438903 1 25 0.379495071364045 N 0.137407050657975 NA 0.379495071364045 N 0.0619039809710448 NA 0.379495071364045 N 0.992 8 21, 25, 460, 500, 755, 759, 772, 960 UBAP2_sequences_filtered_longestORFs_mafft_mincov_prank UBAP2_all 2044 24 0.314627701475 0.319 N 0.0883 13 569, 1183, 1189, 1271, 1390, 1449, 1457, 1584, 1656, 1668, 1673, 1674, 1861 Y 0.04356681576239805 0 Y 0.00019803234787945596 2 570, 1664 Y 0.010224177708430196 0 Y 6.585863546181317e-05 0
+UBAP2L UBAP2L UBAP2L nsp12 list26_COV_list4dataset2nonOrf ubiquitin associated protein 2 like NICE-4|NICE4 no 20 3264 1088 0.05012 0.1409 0.0065 0.1304 1 1 1 1 0.99967 1 NA NA NA UBAP2L ENSMLUG00000012931.2 ENSMLUT00000012940.2 11 1088 98.4375 0.059892632 0.2704 0.52839 0.52839 -7053.772669 -7053.773041 0.999628069 NA NA NA UBAP2L ENSG00000143569.18 ENST00000428931.5 9 1088 99.72426471 0.023452657 0.0273 0.03667 0.03668 -4683.160524 -4683.161165 0.999359205 NA NA NA UBAP2L 1 1 NA NA NA 2865 955 0.06899 0.09125 0.0058 0.0835 1 1 1 1 0.9999 1 NA NA NA 0.0532591345590469 N 0.999663056777722 NA 0.0532591345590469 N 0.999665056105603 NA 0.0532591345590469 N 0.999999991637196 NA 0.0532591345590469 N 0.999979377121977 NA 0.0532591345590469 N 1 0 UBAP2L_sequences_filtered_longestORFs_mafft_mincov_prank UBAP2L_all 4315 24 na na Y 0.0000 4 113, 249, 484, 876 na na 0 na na na 0 na na na 0 na na na 0 na
+UBXN8 UBXN8 UBXN8 orf9c list24_COV_list2nonOrf UBX domain protein 8 D8S2298E|REP8|UBXD6 no 24 813 271 0.50084 0.84159 0.2194 0.438 0.028106 0.152405774647887 0.053229 0.23829261627907 0.092445 0.5392625 3.737 3.57202 1 186_-_0.936 UBXN8 ENSMLUG00000016846.2 ENSMLUT00000016850.2 6 276 97.46376812 0.274309794 0.2437 0.48252 0.48252 -1701.535277 -1701.535285 0.999992 NA NA NA UBXN8 ENSG00000104691.14 ENST00000518059.5 16 94 91.4893617 0.304674755 0.1752 0.52166 0.52167 -582.550308 -582.550748 0.999560097 NA NA NA NA NA NA NA NA 663 221 0.62671 0.63926 0.1834 0.2926 0.0023872 0.0314288333333333 0.0071576 0.0918558666666667 0.0099571 0.136910125 2.326 6.34799 2 160_-_0.982,161_-_0.963 0.507181975522221 N 0.0744056797002321 NA 0.507181975522221 Y 0.0394500880402753 0 0.507181975522221 N 0.144293241597015 NA 0.507181975522221 N 0.0864507374052582 NA 0.507181975522221 Y 1e-04 8 69, 143, 170, 178, 182, 183, 186, 189 UBXN8_sequences_filtered_longestORFs_mafft_mincov_prank UBXN8_all 699 23 0.372707393059 0.357 Y 0.0023 8 318, 405, 446, 473, 505, 509, 513, 627 N 0.9999984149270688 0 na N 0.9999874088127017 0 na N 1.0 0 na N 0.9733612415242943 0 na
+UGGT2 UGGT2 UGGT2 orf8 list25_COV_list3dataset2orf UDP-glucose glycoprotein glucosyltransferase 2 HUGT2|UGCGL2|UGT2 yes 23 4551 1517 0.35533 0.48303 0.1111 0.3127 0.00010251 0.00207717631578947 0.0001047 0.00223941666666667 0.00054498 0.0110430157894737 8.35 2.43106 3 640_M_0.913,665_R_0.967,1106_R_0.967 UGGT2 ENSMLUG00000013792.2 ENSMLUT00000013809.2 7 1468 97.68392371 0.218251257 0.4634 0.69338 0.70762 -9586.277286 -9585.18169 0.334340281 NA NA NA UGGT2 ENSG00000102595.19 ENST00000638479.1 16 280 98.57142857 0.198271962 0.1231 0.29704 0.30399 -1640.324902 -1637.365534 0.051851677 NA NA NA UGGT2 1.89e-05 0.003004396 UDP-glucose glycoprotein glucosyltransferase 2 NA NA NA UDP-glucose:glycoprotein glucosyltransferase (UGT) is a soluble protein of the endoplasmic reticulum (ER) that selectively reglucosylates unfolded glycoproteins, thus providing quality control for protein transport out of the ER. 3948 1316 0.35856 0.34621 0.0812 0.2264 0.46686 1 0.6154 1 0.7956 1 NA NA NA 0.434858444388117 Y 0.000544913767821883 2 665, 1106 0.434858444388117 Y 9.76899373121828e-05 2 665, 1106 0.434858444388117 Y 0.00575112646566426 0 0.434858444388117 Y 0.000261631833198818 4 640, 665, 986, 1106 0.434858444388117 N 0.9862 6 7, 252, 278, 463, 665, 1106 UGGT2_sequences_filtered_longestORFs_mafft_mincov_prank UGGT2_all 2127 22 0.368713980825 0.315 N 0.6342 19 251, 252, 284, 310, 315, 355, 360, 399, 425, 453, 495, 509, 587, 764, 765, 1026, 1088, 1190, 1559 Y 0.020000998743095837 47 59, 316, 334, 392, 399, 417, 425, 462, 495, 496, 509, 580, 582, 595, 628, 633, 672, 683, 697, 706, 707, 764, 769, 801, 836, 839, 843, 899, 917, 936, 964, 988, 995, 998, 1018, 1044, 1088, 1114, 1190, 1203, 1212, 1230, 1330, 1345, 1348, 1358, 1363 Y 0.0007007729591462683 14 334, 509, 582, 672, 697, 764, 769, 964, 988, 1044, 1114, 1190, 1330, 1345 Y 0.00892409818605493 0 Y 3.4209745443492555e-05 3 697, 1044, 1190
+UPF1 UPF1 UPF1 N list26_COV_list4dataset2nonOrf UPF1, RNA helicase and ATPase HUPF1|NORF1|RENT1|pNORF1|smg-2 no 24 3390 1130 0.00093 0.54693 8e-04 0.8847 1 1 1 1 0.99397 1 NA NA NA UPF1 ENSMLUG00000012122.2 ENSMLUT00000012134.2 3 1119 98.39142091 0.001231162 0.2225 0.20224 0.20225 -5134.073382 -5134.074101 0.999281258 NA NA NA UPF1 ENSG00000005007.12 ENST00000599848.5 12 1130 90.08849558 0.062638737 0.1437 0.42917 0.40573 -5850.36909 -5756.191655 1.26e-41 -5819.088195 3.41e-29 11 A65, A67, A69, A70, A71, Q73, L74, D75, A76, G61, P62 UPF1 1 1 NA NA NA 2289 763 1e-04 0.23447 0 0.3784 1 1 1 1 0.99607 1 NA NA NA 0.00146815885582565 na NA NA 0.00146815885582565 na NA NA 0.00146815885582565 N 0.999999969489182 NA 0.00146815885582565 N 0.999999998457497 NA 0.00146815885582565 N 1 0 UPF1_sequences_filtered_longestORFs_mafft_mincov_prank UPF1_all 1740 24 na na na na 0 na na na 0 na na na 0 na na na 0 na na na 0 na
+USP13 USP13 USP13 nsp13 list26_COV_list4dataset2nonOrf ubiquitin specific peptidase 13 ISOT3|IsoT-3 no 24 2592 864 0.05031 0.54252 0.0277 0.5498 1 1 1 1 1 1 NA NA NA USP13 ENSMLUG00000013714.2 ENSMLUT00000013725.2 6 852 84.50704225 0.051623599 0.3758 0.57302 0.58116 -4583.477402 -4578.42332 0.006383224 -4581.966746 0.007765153 1 T131 NA NA NA NA NA NA NA NA NA NA NA NA NA USP13 1 1 NA NA NA 1896 632 0.06944 0.30839 0.0215 0.31 1 1 1 1 1 1 NA NA NA 0.0549468727661177 N 0.531383657393398 NA 0.0549468727661177 N 0.061859227480149 NA 0.0549468727661177 N 0.731546225405877 NA 0.0549468727661177 N 0.0940548937145576 NA 0.0549468727661177 N 0.3749 2 131, 722 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
+USP54 USP54 USP54 nsp12 list24_COV_list2nonOrf ubiquitin specific peptidase 54 C10orf29|bA137L10.3|bA137L10.4 yes 22 5058 1686 0.42393 0.34784 0.0824 0.1943 0.0024524 0.0252063552631579 0.010016 0.0803366666666667 0.010077 0.10485527027027 0.23 10.3092 1 1491_M_0.992 USP54 ENSMLUG00000012728.2 ENSMLUT00000012728.2 12 1587 87.71266541 0.26879749 0.2314 0.96202 0.96413 -12307.94479 -12306.97869 0.38056511 NA NA NA USP54 ENSG00000166348.18 ENST00000422491.6 13 726 98.48484848 0.723739102 0.1146 0.36231 0.36547 -4514.93199 -4511.186064 0.023613753 -4514.93199 0.006197878 1 M531 USP54 0.970088998 1 NA NA NA 4584 1528 0.41709 0.27595 0.0652 0.1563 0.35892 1 0.64101 1 0.65645 1 NA NA NA 0.431124681182177 Y 0.0100769866951812 1 1491 0.431124681182177 Y 0.00904135704723218 1 1491 0.431124681182177 Y 0.0120449381385466 1 1491 0.431124681182177 Y 0.00289513711458208 1 1491 0.431124681182177 N 1 5 463, 985, 1334, 1341, 1491 USP54_sequences_filtered_longestORFs_mafft_mincov_prank USP54_all 2486 24 0.386068465868 0.385 N 0.6967 22 464, 1198, 1478, 1525, 1562, 1591, 1627, 1635, 1688, 1712, 1765, 1784, 1862, 1875, 1988, 1989, 1996, 2118, 2234, 2341, 2347, 2410 Y 4.585969349940591e-12 2 1478, 2234 Y 1.025159258712707e-12 2 1478, 2234 Y 6.791054347170535e-13 2 1478, 2234 na na 0 na
+VIMP SELENOS VIMP nsp7 list26_COV_list4dataset2nonOrf selenoprotein S protein-coding AD-015|ADO15|SBBI8|SELS|SEPS1|VIMP no 24 567 189 0.21832 0.68129 0.1108 0.5076 0.93424 1 0.91359 1 0.99621 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SELENOS ENSG00000131871.14 ENST00000528346.1 9 218 83.02752294 0.295972578 0.1231 0.34109 0.34109 -1105.646929 -1105.646929 1 NA NA NA NA NA NA NA NA 408 136 0.1532 0.50802 0.0684 0.4462 0.65661 1 0.78342 1 0.90578 1 NA NA NA 0.235282328707418 na NA NA 0.235282328707418 na NA NA 0.235282328707418 N 0.999993329453411 NA 0.235282328707418 N 0.542682714730467 NA 0.235282328707418 Y 0 1 178 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
+VPS11 VPS11 VPS11 orf3a list23_COV_list1orf VPS11, CORVET/HOPS core subunit END1|HLD12|PEP5|RNF108|hVPS11 no 24 2826 942 0.04236 0.3332 0.0151 0.3575 0.99681 1 0.10871 0.391152803738318 1 1 NA NA NA VPS11 ENSMLUG00000004793.2 ENSMLUT00000004798.2 13 943 98.83351007 0.055926261 0.3084 0.82222 0.824 -7277.956573 -7277.724273 0.792708275 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VPS11 0.402188916 1 NA NA NA 2307 769 0.03257 0.20794 0.0079 0.2425 0.80883 1 0.15067 0.878908333333333 0.97115 1 NA NA NA 0.0478056010961971 N 1 NA 0.0478056010961971 Y 0.0306156794784679 0 0.0478056010961971 N 0.990782885645754 NA 0.0478056010961971 Y 2.27019634716518e-05 21 32, 578, 35, 579, 325, 580, 581, 583, 648, 707, 651, 738, 923, 919, 792, 23, 344, 476, 284, 573, 798 0.0478056010961971 N 1 2 476, 648 VPS11_sequences_filtered_longestORFs_mafft_mincov_prank VPS11_all 1500 24 0.048270606305 0.042 N 0.5166 5 440, 528, 682, 787, 854 N 0.9999985946152136 0 na Y 0.0008361633364003558 3 789, 854, 1373 N 1.0 0 na N 1.0 0 na
+VPS39 VPS39 VPS39 orf3a list25_COV_list3dataset2orf VPS39, HOPS complex subunit TLP|VAM6|hVam6p yes 24 2664 888 0.07692 0.33728 0.0244 0.3168 0.0053557 0.0458209888888889 0.0029118 0.0294919871794872 0.021125 0.180736111111111 0.32 6.7796 2 58_S_0.965,616_S_0.922 VPS39 ENSMLUG00000000645.2 ENSMLUT00000000653.2 11 888 93.01801802 0.049487979 0.3105 0.7106 0.71289 -6078.198643 -6078.048493 0.86057888 NA NA NA VPS39 ENSG00000166887.15 ENST00000318006.9 17 876 97.26027397 0.02655803 0.1281 0.27595 0.27723 -4843.388677 -4843.241397 0.863052289 NA NA NA VPS39 0.711489244 1 NA NA NA 2259 753 0.08385 0.2275 0.0175 0.2092 0.011857 0.120130131578947 0.019509 0.202999054054054 0.042734 0.439436973684211 0.243 9.68284 1 42_S_0.966 0.0773277176261149 na NA NA 0.0773277176261149 na NA NA 0.0773277176261149 N 0.110054233532065 NA 0.0773277176261149 Y 0.00322126441776118 2 616, 58 0.0773277176261149 N 0.2849 3 79, 454, 803 VPS39_sequences_filtered_longestORFs_mafft_mincov_prank VPS39_all 1501 23 0.046946875948 0.052 Y 0.0000 6 68, 135, 146, 169, 225, 706 Y 7.272055658525019e-16 1 146 Y 2.5399423605918594e-30 1 146 Y 2.7057022431548876e-16 1 146 Y 1.5006105308565566e-22 1 146
+WFS1 WFS1 WFS1 orf9c list26_COV_list4dataset2nonOrf wolframin ER transmembrane glycoprotein CTRCT41|WFRS|WFS|WFSL no 24 2676 892 0.05634 0.83163 0.0831 1.4742 0.20548 0.577443795620438 0.020523 0.129530409836066 0.56458 1 1.077 1.68628 3 57_A_0.966,116_N_0.914,117_T_0.922 NA NA NA NA NA NA NA NA NA NA NA NA NA WFS1 ENSG00000109501.13 ENST00000506362.1 15 251 97.21115538 0.114656782 0.2466 0.63994 0.64766 -1677.785695 -1675.78902 0.135786022 NA NA NA NA NA NA NA NA 1647 549 0.0819 0.34708 0.0459 0.5602 0.34967 1 0.4132 1 0.65158 1 NA NA NA 0.117884009791267 N 0.999986000097807 NA 0.117884009791267 Y 0.00253884506544878 1 57 0.117884009791267 N 0.999999707160939 NA 0.117884009791267 Y 1.46766919733992e-07 7 162, 44, 591, 116, 117, 57, 510 0.117884009791267 Y 0 13 57, 118, 120, 125, 132, 145, 146, 147, 151, 223, 587, 625, 823 WFS1_sequences_filtered_longestORFs_mafft_mincov_prank WFS1_all 1072 24 0.081575261516 0.056 N 0.2613 6 78, 118, 486, 768, 806, 1004 N 0.9999996897186547 0 na Y 9.570229689317189e-07 5 101, 118, 125, 230, 772 N 0.39971639333834935 0 na Y 2.184769995878869e-06 2 118, 230
+WHSC1 NSD2 WHSC1 nsp8 list26_COV_list4dataset2nonOrf nuclear receptor binding SET domain protein 2 KMT3F|KMT3G|MMSET|REIIBP|TRX5|WHS|WHSC1 no 23 4113 1371 0.09001 0.36185 0.0315 0.3496 0.27689 0.687759032258065 0.27841 0.719381543624161 0.55646 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NSD2 ENSG00000109685.17 ENST00000436793.5 18 274 92.33576642 0.070500844 0.1484 0.33157 0.33157 -1552.440796 -1552.44109 0.999706043 NA NA NA WHSC1 0.129384661 1 NA NA NA 3228 1076 0.09064 0.17965 0.0171 0.1889 0.25303 1 0.34824 1 0.52368 1 NA NA NA 0.101487990167276 N 0.556465558315611 NA 0.101487990167276 N 0.205366313359943 NA 0.101487990167276 N 0.821927442781272 NA 0.101487990167276 Y 6.95395134184658e-05 5 636, 419, 422, 390, 543 0.101487990167276 N 0.9184 1 390 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
+YIF1A YIF1A YIF1A M list26_COV_list4dataset2nonOrf Yip1 interacting factor homolog A, membrane trafficking protein 54TM|FinGER7|YIF1|YIF1P no 24 882 294 0.12933 0.36727 0.0442 0.3414 0.096034 0.366070198019802 0.2503 0.664589655172414 0.34712 1 0.448 10.38547 1 43_P_0.926 NA NA NA NA NA NA NA NA NA NA NA NA NA YIF1A ENSG00000174851.15 ENST00000528575.1 19 160 85 0.165053289 0.1698 0.2852 0.31847 -784.604746 -783.79045 0.442951055 NA NA NA YIF1A 1 1 NA NA NA 690 230 0.14733 0.2433 0.0324 0.2198 0.60503 1 0.82915 1 0.89112 1 NA NA NA 0.155614548337657 N 0.358097852114653 NA 0.155614548337657 N 0.257094129114002 NA 0.155614548337657 N 0.955211787056761 NA 0.155614548337657 N 0.469897649534634 NA 0.155614548337657 N 1 0 YIF1A_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank YIF1A_all_part1 1223 24 0.122099669920 0.108 N 1.0000 1 190 N 0.9999998503785831 0 na N 0.9986341687072853 0 na N 0.7276027884144418 0 na N 0.2608003778811103 0 na
+ZC3H18 ZC3H18 ZC3H18 E list26_COV_list4dataset2nonOrf zinc finger CCCH-type containing 18 NHN1 no 24 2967 989 0.1117 0.58973 0.0604 0.5411 1 1 1 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZC3H18 ENSG00000158545.15 ENST00000565583.1 18 197 95.93908629 0.085936944 0.247 0.56059 0.56201 -1285.422209 -1285.384522 0.963014317 NA NA NA ZC3H18 0.871831956 1 NA NA NA 1926 642 0.14281 0.26642 0.0343 0.2403 0.20603 0.90234375 0.17233 0.934465492957747 0.4399 1 NA NA NA 0.133453109896504 N 0.999931002380733 NA 0.133453109896504 N 0.944983322304207 NA 0.133453109896504 N 0.999997668898675 NA 0.133453109896504 N 0.0676441490123511 NA 0.133453109896504 Y 0 7 426, 529, 667, 728, 733, 735, 816 ZC3H18_sequences_filtered_longestORFs_mafft_mincov_prank ZC3H18_all 1100 24 0.087671644891 0.083 N 0.6012 3 722, 782, 981 N 0.9999993848816375 0 na Y 0.015299480271226013 0 N 1.0 0 na N 1.0 0 na
+ZC3H7A ZC3H7A ZC3H7A nsp12 list24_COV_list2nonOrf zinc finger CCCH-type containing 7A HSPC055|ZC3H7|ZC3HDC7 no 24 2919 973 0.0703 0.28797 0.0222 0.3162 1 1 1 1 1 1 NA NA NA ZC3H7A ENSMLUG00000016057.2 ENSMLUT00000016063.2 14 972 96.39917695 0.145913877 0.2854 0.92464 0.92703 -7996.266014 -7992.041236 0.014628582 -7992.243575 0.524683178 NA ZC3H7A ENSG00000122299.11 ENST00000574995.1 17 60 100 0.08310466 0.1663 0.20635 0.20635 -306.624008 -306.624037 0.999971 NA NA NA ZC3H7A 1 1 NA NA NA 2544 848 0.07866 0.16398 0.0145 0.1849 1 1 1 1 1 1 NA NA NA 0.0785375078431608 N 1 NA 0.0785375078431608 N 0.999965000612468 NA 0.0785375078431608 N 0.999999442217059 NA 0.0785375078431608 N 0.506130915924095 NA 0.0785375078431608 N 1 0 ZC3H7A_sequences_filtered_longestORFs_mafft_mincov_prank ZC3H7A_all 1242 24 0.100883053669 0.091 Y 0.0003 8 35, 150, 272, 389, 423, 540, 614, 1033 N 0.9999988073966796 0 na N 0.9433840075471273 0 na N 1.0 0 na N 1.0 0 na
+ZDHHC5 ZDHHC5 ZDHHC5 S list24_COV_list2nonOrf zinc finger DHHC-type containing 5 DHHC5|ZNF375 no 24 2148 716 0.12268 0.2455 0.0259 0.2108 1 1 1 1 1 1 NA NA NA ZDHHC5 ENSMLUG00000007907.2 ENSMLUT00000007912.2 13 716 97.48603352 0.064428918 0.2339 0.56354 0.56388 -4860.870289 -4859.602846 0.281550627 NA NA NA ZDHHC5 ENSG00000156599.10 ENST00000529447.1 14 300 99 0.080413163 0.1002 0.16659 0.16651 -1522.725007 -1522.654007 0.931461892 NA NA NA ZDHHC5 1 1 NA NA NA 1848 616 0.12365 0.18502 0.0202 0.1636 0.99805 1 0.9804 1 1 1 NA NA NA 0.126952416676993 N 1 NA 0.126952416676993 N 0.977828482591664 NA 0.126952416676993 N 0.999993626504267 NA 0.126952416676993 N 0.559758572616013 NA 0.126952416676993 N 0.6286 1 101 ZDHHC5_sequences_filtered_longestORFs_mafft_mincov_prank ZDHHC5_all 823 24 0.078488206473 0.075 Y 0.0351 2 597, 742 N 0.9848981471344455 0 na Y 0.013502502486699652 2 404, 597 N 1.0 0 na N 0.49213608756256844 0 na
+ZNF318 ZNF318 ZNF318 nsp12 list24_COV_list2nonOrf zinc finger protein 318 HRIHFB2436|TZF|ZFP318 no 24 6855 2285 0.29861 0.4399 0.0859 0.2878 0.026812 0.1483075 0.038536 0.19268 0.091187 0.5392625 0.872 4.01109 2 1482_V_0.972,1911_P_0.901 ZNF318 ENSMLUG00000009010.2 ENSMLUT00000009012.2 8 2177 89.98621957 0.282912504 0.2315 0.69261 0.69462 -14715.78766 -14714.17339 0.199036312 NA NA NA ZNF318 ENSG00000171467.15 ENST00000361428.2 11 2280 94.60526316 0.268984219 0.0914 0.29951 0.38485 -12518.15852 -12328.25031 3.34e-83 -12516.52556 7.01e-84 32 R66, R67, S71, P73, R74, R55, R76, R77, V78, S81, R86, R87, S29, A36, R37, R38, S39, S40, P41, S46, S49, S50, R51, T52, P53, A54, V1481, R56, R58, S59, S61, H63 ZNF318 0.013754741 0.318245251 NA NA NA 5829 1943 0.35013 0.33866 0.0731 0.2088 0.0047949 0.0559405 0.013839 0.152229 0.020265 0.251678225806452 0.378 7.65838 3 1214_V_0.988,1505_A_0.931,1609_P_0.941 0.306012682308629 N 0.0912718375075246 NA 0.306012682308629 Y 0.0390472042253653 1 1482 0.306012682308629 N 0.162352867668062 NA 0.306012682308629 Y 0.0347462457510878 1 1482 0.306012682308629 Y 0.0272 7 45, 639, 1482, 1659, 1881, 1911, 2061 ZNF318_sequences_filtered_longestORFs_mafft_mincov_prank ZNF318_all 2496 24 0.335852925463 0.343 Y 0.0000 32 38, 75, 78, 104, 174, 392, 443, 703, 799, 1177, 1372, 1492, 1636, 1646, 1647, 1663, 1814, 1897, 1929, 1946, 1995, 2088, 2098, 2166, 2181, 2243, 2249, 2250, 2287, 2356, 2372, 2483 Y 0.0010039629225922107 0 Y 1.3246467997073662e-05 2 1636, 2098 Y 7.829709942783089e-05 2 1636, 2098 Y 1.1348614329410036e-06 6 1636, 1817, 1929, 1954, 2098, 2243
+ZNF503 ZNF503 ZNF503 nsp9 list26_COV_list4dataset2nonOrf zinc finger protein 503 NOLZ-1|NOLZ1|Nlz2 no 24 1962 654 0.02521 0.4826 0.0172 0.6813 1 1 1 1 1 1 NA NA NA ZNF503 ENSMLUG00000012474.2 ENSMLUT00000012475.2 8 645 87.28682171 0.031926297 0.3166 0.63753 0.63754 -3729.002853 -3729.00402 0.998833681 NA NA NA ZNF503 ENSG00000165655.16 ENST00000372524.4 13 647 95.98145286 0.067052231 0.166 0.29355 0.29706 -3368.350648 -3368.028261 0.724417786 NA NA NA NA NA NA NA NA 1050 350 0.02597 0.21013 0.0078 0.2986 1 1 1 1 0.99979 1 NA NA NA 0.0386071485806075 N 1 NA 0.0386071485806075 N 0.99940017996461 NA 0.0386071485806075 N 0.999999933604161 NA 0.0386071485806075 N 0.104422844272743 NA 0.0386071485806075 N 1 0 ZNF503_sequences_filtered_longestORFs_mafft_mincov_prank ZNF503_all 802 21 0.049882463869 0.026 N 1.0000 1 87 N 0.9999980745506383 0 na Y 0.024559140884415645 1 177 N 1.0 0 na N 0.6206425292935231 0 na
+ZYG11B ZYG11B ZYG11B orf10 list25_COV_list3dataset2orf zyg-11 family member B, cell cycle regulator ZYG11 no 24 2238 746 0.03689 0.26145 0.0101 0.2741 0.19666 0.565030597014925 0.012781 0.0936191666666667 0.4345 1 2.423 1.81431 0 noneOver_0.9 ZYG11B ENSMLUG00000024400.1 ENSMLUT00000027975.1 9 384 94.27083333 0.0353737 0.2124 0.36098 0.36142 -2070.412641 -2069.648561 0.465762235 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2007 669 0.05058 0.19347 0.0099 0.195 0.043798 0.3372446 0.0076933 0.0955458225806452 0.12764 0.963556862745098 2.124 2.7985 0 noneOver_0.9 0.0317375205721922 na NA NA 0.0317375205721922 na NA NA 0.0317375205721922 N 0.398236447499959 NA 0.0317375205721922 Y 3.50888781877356e-05 5 737, 506, 563, 564, 565 0.0317375205721922 Y 0 0 ZYG11B_sequences_filtered_longestORFs_mafft_mincov_prank ZYG11B_all 1128 24 0.023655415579 0.025 Y 0.0000 1 998 N 0.9999975270769591 0 na Y 0.020268109682591493 4 896, 990, 993, 998 N 1.0 0 na N 0.6757041139607441 0 na
diff --git a/covid_comp_dataset.Rnw b/covid_comp_dataset.Rnw
index bc6395b..bafcbd7 100644
--- a/covid_comp_dataset.Rnw
+++ b/covid_comp_dataset.Rnw
@@ -60,7 +60,7 @@ batstmp<-rowSums(cbind(tmp$bats_codemlM1M2=="Y", tmp$bats_codemlM7M8=="Y",
tmp$bats_BppM1M2=="Y", tmp$bats_BppM7M8=="Y", tmp$bats_BUSTED=="Y"))
primatetmp<-rowSums(cbind(tmp$"dginn.primate_codemlM1M2"=="Y",
- tmp$"dginn.primat_codemlM7M8"=="Y", tmp$"dginn.primate_BppM1M2"=="Y",
+ tmp$"dginn.primate_codemlM7M8"=="Y", tmp$"dginn.primate_BppM1M2"=="Y",
tmp$"dginn.primate_BppM7M8"=="Y", tmp$"dginn.primate_BUSTED"=="Y"))
monddata$bats_dginn3<-ifelse(batstmp>=3, 1,0)
diff --git a/covid_comp_dataset.pdf b/covid_comp_dataset.pdf
index 922d30e3b054eaa7f607931e6ffc2f352e90fe11..867466467d85fd6f3d7df8bec56751c14e922cb5 100644
GIT binary patch
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diff --git a/covid_comp_dataset.tex b/covid_comp_dataset.tex
index a64505b..1b3153d 100644
--- a/covid_comp_dataset.tex
+++ b/covid_comp_dataset.tex
@@ -126,7 +126,7 @@ Analysis were formatted by the script covid\_comp\_script0\_table.Rnw.
\hlstd{tmp}\hlopt{$}\hlstd{bats_BppM1M2}\hlopt{==}\hlstr{"Y"}\hlstd{, tmp}\hlopt{$}\hlstd{bats_BppM7M8}\hlopt{==}\hlstr{"Y"}\hlstd{, tmp}\hlopt{$}\hlstd{bats_BUSTED}\hlopt{==}\hlstr{"Y"}\hlstd{))}
\hlstd{primatetmp}\hlkwb{<-}\hlkwd{rowSums}\hlstd{(}\hlkwd{cbind}\hlstd{(tmp}\hlopt{$}\hlstr{"dginn.primate_codemlM1M2"}\hlopt{==}\hlstr{"Y"}\hlstd{,}
- \hlstd{tmp}\hlopt{$}\hlstr{"dginn.primat_codemlM7M8"}\hlopt{==}\hlstr{"Y"}\hlstd{, tmp}\hlopt{$}\hlstr{"dginn.primate_BppM1M2"}\hlopt{==}\hlstr{"Y"}\hlstd{,}
+ \hlstd{tmp}\hlopt{$}\hlstr{"dginn.primate_codemlM7M8"}\hlopt{==}\hlstr{"Y"}\hlstd{, tmp}\hlopt{$}\hlstr{"dginn.primate_BppM1M2"}\hlopt{==}\hlstr{"Y"}\hlstd{,}
\hlstd{tmp}\hlopt{$}\hlstr{"dginn.primate_BppM7M8"}\hlopt{==}\hlstr{"Y"}\hlstd{, tmp}\hlopt{$}\hlstr{"dginn.primate_BUSTED"}\hlopt{==}\hlstr{"Y"}\hlstd{))}
\hlstd{monddata}\hlopt{$}\hlstd{bats_dginn3}\hlkwb{<-}\hlkwd{ifelse}\hlstd{(batstmp}\hlopt{>=}\hlnum{3}\hlstd{,} \hlnum{1}\hlstd{,}\hlnum{0}\hlstd{)}
@@ -191,7 +191,9 @@ Analysis were formatted by the script covid\_comp\_script0\_table.Rnw.
## 78 GOLGA7 1 1 1 1
## 89 IDE 1 1 1 1
## 94 ITGB1 1 1 1 1
+## 97 LMAN2 1 1 1 1
## 132 POLA1 1 1 1 1
+## 164 SLC27A2 1 1 1 1
## 188 TOR1AIP1 1 1 1 1
## 201 VPS39 1 1 1 1
\end{verbatim}
@@ -214,9 +216,10 @@ Analysis were formatted by the script covid\_comp\_script0\_table.Rnw.
## 78 GOLGA7 1 1 1 1
## 89 IDE 1 1 1 1
## 94 ITGB1 1 1 1 1
-## 97 LMAN2 1 1 1 0
+## 97 LMAN2 1 1 1 1
+## 104 MOV10 1 1 0 0
## 132 POLA1 1 1 1 1
-## 164 SLC27A2 1 1 1 0
+## 164 SLC27A2 1 1 1 1
## 188 TOR1AIP1 1 1 1 1
## 201 VPS39 1 1 1 1
\end{verbatim}
@@ -236,12 +239,28 @@ Analysis were formatted by the script covid\_comp\_script0\_table.Rnw.
\begin{verbatim}
## tmp$Gene.name bats_dginn3 primate_dginn3 bats_dginn4 primate_dginn4
## 20 CDK5RAP2 1 1 0 1
+## 23 CEP135 0 1 0 1
## 26 CEP68 0 1 0 1
+## 32 CLIP4 0 1 0 1
+## 45 DPH5 0 1 0 1
## 50 EMC1 0 1 0 1
## 68 FYCO1 0 1 0 1
+## 74 GIGYF2 0 1 0 1
+## 75 GLA 0 1 0 1
## 83 HECTD1 0 1 0 1
+## 95 LARP1 0 1 0 1
## 108 MYCBP2 0 1 0 1
+## 111 NDUFB9 0 1 0 1
+## 138 PRKAR2A 0 1 0 1
+## 153 RIPK1 0 1 0 1
+## 156 SAAL1 0 1 0 1
## 160 SEPSECS 0 1 0 1
+## 162 SIRT5 0 1 0 1
+## 163 SLC25A21 0 1 0 1
+## 185 TMEM39B 0 1 0 1
+## 191 TUBGCP2 0 1 0 1
+## 194 UBAP2 0 1 0 1
+## 197 UGGT2 0 1 0 1
## 204 ZNF318 0 1 0 1
\end{verbatim}
\end{kframe}
@@ -256,30 +275,46 @@ Analysis were formatted by the script covid\_comp\_script0\_table.Rnw.
\end{alltt}
\begin{verbatim}
## tmp$Gene.name bats_dginn3 primate_dginn3 bats_dginn4 primate_dginn4
-## 23 CEP135 0 1 0 0
+## 23 CEP135 0 1 0 1
## 26 CEP68 0 1 0 1
-## 32 CLIP4 0 1 0 0
+## 32 CLIP4 0 1 0 1
## 33 CNTRL 0 1 0 0
-## 45 DPH5 0 1 0 0
+## 45 DPH5 0 1 0 1
## 50 EMC1 0 1 0 1
+## 56 EXOSC2 0 1 0 0
## 68 FYCO1 0 1 0 1
-## 74 GIGYF2 0 1 0 0
-## 75 GLA 0 1 0 0
+## 74 GIGYF2 0 1 0 1
+## 75 GLA 0 1 0 1
## 79 GOLGB1 0 1 0 0
+## 80 GORASP1 0 1 0 0
## 83 HECTD1 0 1 0 1
-## 95 LARP1 0 1 0 0
+## 95 LARP1 0 1 0 1
+## 96 LARP7 0 1 0 0
+## 100 MDN1 0 1 0 0
+## 107 MRPS5 0 1 0 0
## 108 MYCBP2 0 1 0 1
-## 111 NDUFB9 0 1 0 0
-## 138 PRKAR2A 0 1 0 0
-## 153 RIPK1 0 1 0 0
-## 156 SAAL1 0 1 0 0
+## 111 NDUFB9 0 1 0 1
+## 115 NGLY1 0 1 0 0
+## 118 NPC2 0 1 0 0
+## 127 PITRM1 0 1 0 0
+## 128 PLAT 0 1 0 0
+## 134 POR 0 1 0 0
+## 138 PRKAR2A 0 1 0 1
+## 144 RAB14 0 1 0 0
+## 145 RAB2A 0 1 0 0
+## 153 RIPK1 0 1 0 1
+## 156 SAAL1 0 1 0 1
## 160 SEPSECS 0 1 0 1
-## 162 SIRT5 0 1 0 0
-## 163 SLC25A21 0 1 0 0
-## 185 TMEM39B 0 1 0 0
-## 191 TUBGCP2 0 1 0 0
-## 194 UBAP2 0 1 0 0
-## 197 UGGT2 0 1 0 0
+## 162 SIRT5 0 1 0 1
+## 163 SLC25A21 0 1 0 1
+## 172 STOM 0 1 0 0
+## 181 TIMM8B 0 1 0 0
+## 185 TMEM39B 0 1 0 1
+## 189 TRIM59 0 1 0 0
+## 190 TRMT1 0 1 0 0
+## 191 TUBGCP2 0 1 0 1
+## 194 UBAP2 0 1 0 1
+## 197 UGGT2 0 1 0 1
## 199 USP54 0 1 0 0
## 204 ZNF318 0 1 0 1
\end{verbatim}
@@ -302,8 +337,6 @@ Analysis were formatted by the script covid\_comp\_script0\_table.Rnw.
## 52 ERGIC1 1 0 1 0
## 91 IMPDH2 1 0 1 0
## 92 INHBE 1 0 1 0
-## 97 LMAN2 1 1 1 0
-## 164 SLC27A2 1 1 1 0
## 166 SLC44A2 1 0 1 0
## 177 TBK1 1 0 1 0
\end{verbatim}
@@ -325,7 +358,6 @@ Analysis were formatted by the script covid\_comp\_script0\_table.Rnw.
## 82 GRPEL1 1 0 0 0
## 91 IMPDH2 1 0 1 0
## 92 INHBE 1 0 1 0
-## 104 MOV10 1 0 0 0
## 120 NUP214 1 0 0 0
## 136 PRIM1 1 0 0 0
## 165 SLC30A9 1 0 0 0
@@ -419,9 +451,9 @@ Analysis were formatted by the script covid\_comp\_script0\_table.Rnw.
\end{alltt}
\begin{verbatim}
## [1] 0 1
+## [1] 1 2
## [1] 2 0
## [1] 2 1
-## [1] 3 1
\end{verbatim}
\begin{alltt}
\hlstd{tmp}\hlkwb{<-}\hlstd{tablo}\hlopt{$}\hlstd{`tmp$Gene.name`[tablo}\hlopt{$}\hlstd{nbats}\hlopt{==}\hlnum{0} \hlopt{&} \hlstd{tablo}\hlopt{$}\hlstd{nprimates}\hlopt{==}\hlnum{1}\hlstd{]}
@@ -433,8 +465,10 @@ Analysis were formatted by the script covid\_comp\_script0\_table.Rnw.
\hlkwd{text}\hlstd{(}\hlopt{-}\hlnum{0.4}\hlstd{,}\hlopt{-}\hlnum{1.7}\hlstd{,} \hlstr{"p=1/n=1"}\hlstd{,} \hlkwc{cex}\hlstd{=}\hlnum{0.6}\hlstd{)}
\hlkwd{text}\hlstd{(}\hlkwd{seq}\hlstd{(}\hlkwc{from}\hlstd{=}\hlnum{0.1}\hlstd{,} \hlkwc{to}\hlstd{=}\hlnum{5.5}\hlstd{,} \hlkwc{length.out} \hlstd{=} \hlnum{18}\hlstd{),}\hlopt{-}\hlnum{1.6}\hlstd{, tmp[}\hlnum{1}\hlopt{:}\hlnum{18}\hlstd{],} \hlkwc{cex}\hlstd{=}\hlnum{0.4}\hlstd{)}
\hlkwd{text}\hlstd{(}\hlkwd{seq}\hlstd{(}\hlkwc{from}\hlstd{=}\hlnum{0.1}\hlstd{,} \hlkwc{to}\hlstd{=}\hlnum{2}\hlstd{,} \hlkwc{length.out} \hlstd{=} \hlkwd{length}\hlstd{(tmp)}\hlopt{-}\hlnum{18}\hlstd{),}\hlopt{-}\hlnum{1.8}\hlstd{, tmp[}\hlnum{19}\hlopt{:}\hlkwd{length}\hlstd{(tmp)],} \hlkwc{cex}\hlstd{=}\hlnum{0.4}\hlstd{)}
+\end{alltt}
+{\ttfamily\noindent\bfseries\color{errorcolor}{\#\# Error in seq.default(from = 0.1, to = 2, length.out = length(tmp) - 18): 'length.out' must be a non-negative number}}\begin{alltt}
\hlstd{tmp}\hlkwb{<-}\hlstd{tablo}\hlopt{$}\hlstd{`tmp$Gene.name`[tablo}\hlopt{$}\hlstd{nbats}\hlopt{==}\hlnum{0} \hlopt{&} \hlstd{tablo}\hlopt{$}\hlstd{nprimates}\hlopt{==}\hlnum{0}\hlstd{]}
\hlkwd{text}\hlstd{(}\hlopt{-}\hlnum{0.4}\hlstd{,}\hlopt{-}\hlnum{2.2}\hlstd{,} \hlstr{"p=0/n=0"}\hlstd{,} \hlkwc{cex}\hlstd{=}\hlnum{0.6}\hlstd{)}
\hlkwd{text}\hlstd{(}\hlkwd{seq}\hlstd{(}\hlkwc{from}\hlstd{=}\hlnum{0.1}\hlstd{,} \hlkwc{to}\hlstd{=}\hlnum{5.5}\hlstd{,} \hlkwc{length.out} \hlstd{=} \hlnum{17}\hlstd{),}\hlopt{-}\hlnum{2.1}\hlstd{, tmp[}\hlnum{1}\hlopt{:}\hlnum{17}\hlstd{],} \hlkwc{cex}\hlstd{=}\hlnum{0.4}\hlstd{)}
@@ -443,11 +477,15 @@ Analysis were formatted by the script covid\_comp\_script0\_table.Rnw.
\hlstd{tmp}\hlkwb{<-}\hlstd{tablo}\hlopt{$}\hlstd{`tmp$Gene.name`[tablo}\hlopt{$}\hlstd{nbats}\hlopt{==}\hlnum{2} \hlopt{&} \hlstd{tablo}\hlopt{$}\hlstd{nprimates}\hlopt{==}\hlnum{0}\hlstd{]}
\hlkwd{text}\hlstd{(}\hlopt{-}\hlnum{0.4}\hlstd{,}\hlopt{-}\hlnum{2.7}\hlstd{,} \hlstr{"p=0/n=2"}\hlstd{,} \hlkwc{cex}\hlstd{=}\hlnum{0.6}\hlstd{)}
\hlkwd{text}\hlstd{(}\hlkwd{seq}\hlstd{(}\hlkwc{from}\hlstd{=}\hlnum{0.1}\hlstd{,} \hlkwc{to}\hlstd{=}\hlnum{5.5}\hlstd{,} \hlkwc{length.out} \hlstd{=} \hlnum{18}\hlstd{),}\hlopt{-}\hlnum{2.6}\hlstd{, tmp[}\hlnum{1}\hlopt{:}\hlnum{18}\hlstd{],} \hlkwc{cex}\hlstd{=}\hlnum{0.4}\hlstd{)}
-\hlkwd{text}\hlstd{(}\hlkwd{seq}\hlstd{(}\hlkwc{from}\hlstd{=}\hlnum{0.1}\hlstd{,} \hlkwc{to}\hlstd{=}\hlnum{1}\hlstd{,} \hlkwc{length.out} \hlstd{=} \hlkwd{length}\hlstd{(tmp)}\hlopt{-}\hlnum{18}\hlstd{),}\hlopt{-}\hlnum{2.8}\hlstd{, tmp[}\hlnum{19}\hlopt{:}\hlkwd{length}\hlstd{(tmp)],} \hlkwc{cex}\hlstd{=}\hlnum{0.4}\hlstd{)}
\end{alltt}
\end{kframe}
\includegraphics[width=\maxwidth]{figure/tablo-1}
+\begin{kframe}\begin{alltt}
+\hlkwd{text}\hlstd{(}\hlkwd{seq}\hlstd{(}\hlkwc{from}\hlstd{=}\hlnum{0.1}\hlstd{,} \hlkwc{to}\hlstd{=}\hlnum{1}\hlstd{,} \hlkwc{length.out} \hlstd{=} \hlkwd{length}\hlstd{(tmp)}\hlopt{-}\hlnum{18}\hlstd{),}\hlopt{-}\hlnum{2.8}\hlstd{, tmp[}\hlnum{19}\hlopt{:}\hlkwd{length}\hlstd{(tmp)],} \hlkwc{cex}\hlstd{=}\hlnum{0.4}\hlstd{)}
+\end{alltt}
+
+{\ttfamily\noindent\bfseries\color{errorcolor}{\#\# Error in seq.default(from = 0.1, to = 1, length.out = length(tmp) - 18): 'length.out' must be a non-negative number}}\end{kframe}
\end{knitrout}
\end{document}
diff --git a/covid_comp_primate-Young-focus.pdf b/covid_comp_primate-Young-focus.pdf
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z<ECO3_Go9AR6}N?HztUHVu}mOuju7*+`LT-uZsm6BUs5d8FwLn4=+~GQ7Qva@Elqu
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ztWudmf60*|De*`E`i%I4+z3Vy@Z$+T9FWArgvW>5w^MQD&bzX%-Ej17?D26$%266N
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z4(a(@UpM=P!=1YK-+%4WO<J5GI{Qf4qkqNWB^|m)7Mm@PK5Dixc1ySHksr$q9!K`~
zzY(5$B;{b{^c$LGop%>Sf9bGIT7N<?INxddc3(Yfy>G(ni~XvPG8P7W>2!Xy!9uC8
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KR8?L5-M9eHycMbd
diff --git a/covid_comp_primate-Young-focus.tex b/covid_comp_primate-Young-focus.tex
index 43d236b..8a48aa9 100644
--- a/covid_comp_primate-Young-focus.tex
+++ b/covid_comp_primate-Young-focus.tex
@@ -185,14 +185,10 @@ I will merge the 2 tables.
\hlkwd{names}\hlstd{(dginnT)}
\end{alltt}
\begin{verbatim}
-## [1] "File" "Name" "Gene"
-## [4] "GeneSize" "NbSpecies" "omegaM0Bpp"
-## [7] "omegaM0codeml" "BUSTED" "BUSTED.p.value"
-## [10] "MEME.NbSites" "MEME.PSS" "BppM1M2"
-## [13] "BppM1M2.p.value" "BppM1M2.NbSites" "BppM1M2.PSS"
-## [16] "BppM7M8" "BppM7M8.p.value" "BppM7M8.NbSites"
-## [19] "BppM7M8.PSS" "codemlM1M2" "codemlM1M2.p.value"
-## [22] "codemlM1M2.NbSites" "codemlM1M2.PSS" "codemlM7M8"
+## [1] "File" "Name" "Gene" "GeneSize" "NbSpecies" "omegaM0Bpp"
+## [7] "omegaM0codeml" "BUSTED" "BUSTED.p.value" "MEME.NbSites" "MEME.PSS" "BppM1M2"
+## [13] "BppM1M2.p.value" "BppM1M2.NbSites" "BppM1M2.PSS" "BppM7M8" "BppM7M8.p.value" "BppM7M8.NbSites"
+## [19] "BppM7M8.PSS" "codemlM1M2" "codemlM1M2.p.value" "codemlM1M2.NbSites" "codemlM1M2.PSS" "codemlM7M8"
## [25] "codemlM7M8.p.value" "codemlM7M8.NbSites" "codemlM7M8.PSS"
\end{verbatim}
\begin{alltt}
@@ -200,32 +196,24 @@ I will merge the 2 tables.
\hlstd{dginnT[(dginnT}\hlopt{$}\hlstd{Gene} \hlopt{%in%} \hlstd{tab}\hlopt{$}\hlstd{Gene.name)}\hlopt{==}\hlstd{F,}\hlstr{"Gene"}\hlstd{]}
\end{alltt}
\begin{verbatim}
-## [1] ACE2 ADAM9[0-3120] ADAM9[3119-3927] ATP5MGL
-## [5] C1H1ORF50 CEP135[0-3264] CEP135[3263-3678] CEP43
-## [9] COQ8B COQ8A CSNK2A1 CSNK2B[0-609]
-## [13] CSNK2B[608-2568] CYB5R1 DDX21[0-717] DDX21[716-2538]
-## [17] DDX50 DNAJC15 DPH5[0-702] DPH5[701-1326]
-## [21] DPY19L2 ELOC ERO1B EXOSC3[0-1446]
-## [25] EXOSC3[1445-1980] FBN3 GNB4 GNB2
-## [29] GNB3 GOLGA7[0-312] GOLGA7[311-549] GPX1[0-1218]
-## [33] GPX1[1217-2946] HDAC1 HS6ST3 IMPDH1
-## [37] ITGB1[0-2328] ITGB1[2327-2844] LMAN2L MRPS5[0-1569]
-## [41] MRPS5[1568-3783] MARC2 MGRN1 NDFIP2[0-768]
-## [45] NDFIP2[767-1314] NDUFAF2[0-258] NDUFAF2[257-744] NSD2
-## [49] NUP58 NUP58[0-1824] NUP58[1823-2367] PABPC3
-## [53] POTPABPC1 PABPC4L PABPC5 PCSK5
-## [57] PRIM2[0-1071] PRIM2[1070-1902] PRKACB PRKACG
-## [61] PTGES2[0-1587] PTGES2[1586-2202] RAB8B RAB13
-## [65] RAB18[0-855] RAB18[854-1815] RAB2B RAB5A
-## [69] RAB5B RAB15 RALB EZR
-## [73] EZR[0-1458] EZR[1457-3771] MSN RETREG3
-## [77] RHOB RHOC SLC44A2[0-2577] SLC44A2[2576-3657]
-## [81] SPART SRP72[0-2604] SRP72[2603-3417] STOM[0-1047]
-## [85] STOM[1046-1800] STOML3 TIMM29 TLE4
-## [89] TLE2 TLE2[0-1302] TLE2[1301-3987] TMPRSS2
-## [93] TOMM70 TOR1B WASHC4 WFS1[0-2346]
+## [1] ACE2 ADAM9[0-3120] ADAM9[3119-3927] ATP5MGL C1H1ORF50 CEP135[0-3264]
+## [7] CEP135[3263-3678] CEP43 COQ8B COQ8A CSNK2A1 CSNK2B[0-609]
+## [13] CSNK2B[608-2568] CYB5R1 DDX21[0-717] DDX21[716-2538] DDX50 DNAJC15
+## [19] DPH5[0-702] DPH5[701-1326] DPY19L2 ELOC ERO1B EXOSC3[0-1446]
+## [25] EXOSC3[1445-1980] FBN3 GNB4 GNB2 GNB3 GOLGA7[0-312]
+## [31] GOLGA7[311-549] GPX1[0-1218] GPX1[1217-2946] HDAC1 HS6ST3 IMPDH1
+## [37] ITGB1[0-2328] ITGB1[2327-2844] LMAN2L MRPS5[0-1569] MRPS5[1568-3783] MARC2
+## [43] MGRN1 NDFIP2[0-768] NDFIP2[767-1314] NDUFAF2[0-258] NDUFAF2[257-744] NSD2
+## [49] NUP58 NUP58[0-1824] NUP58[1823-2367] PABPC3 POTPABPC1 PABPC4L
+## [55] PABPC5 PCSK5 PRIM2[0-1071] PRIM2[1070-1902] PRKACB PRKACG
+## [61] PTGES2[0-1587] PTGES2[1586-2202] RAB8B RAB13 RAB18[0-855] RAB18[854-1815]
+## [67] RAB2B RAB5A RAB5B RAB15 RALB EZR
+## [73] EZR[0-1458] EZR[1457-3771] MSN RETREG3 RHOB RHOC
+## [79] SLC44A2[0-2577] SLC44A2[2576-3657] SPART SRP72[0-2604] SRP72[2603-3417] STOM[0-1047]
+## [85] STOM[1046-1800] STOML3 TIMM29 TLE4 TLE2 TLE2[0-1302]
+## [91] TLE2[1301-3987] TMPRSS2 TOMM70 TOR1B WASHC4 WFS1[0-2346]
## [97] WFS1[2345-3216] YIF1B
-## 411 Levels: AAR2 AASS AATF ABCC1 ACAD9 ACADM ACE2 ACSL3 ADAM9 ... ZYG11B
+## 411 Levels: AAR2 AASS AATF ABCC1 ACAD9 ACADM ACE2 ACSL3 ADAM9 ADAM9[0-3120] ADAM9[3119-3927] ADAMTS1 AES AGPS AKAP8 AKAP8L ... ZYG11B
\end{verbatim}
\begin{alltt}
\hlcom{# This includes paralogs, recombinations found by DGINN }
@@ -235,10 +223,8 @@ I will merge the 2 tables.
\hlstd{tab[(tab}\hlopt{$}\hlstd{Gene.name} \hlopt{%in%} \hlstd{dginnT}\hlopt{$}\hlstd{Gene)}\hlopt{==}\hlstd{F,}\hlstr{"Gene.name"}\hlstd{]}
\end{alltt}
\begin{verbatim}
-## [1] "ADCK4" "ARL6IP6" "ATP5L" "C19orf52" "C1orf50" "ERO1LB"
-## [7] "FAM134C" "FGFR1OP" "KIAA1033" "MFGE8" "NUPL1" "SIGMAR1"
-## [13] "SPG20" "TCEB1" "TCEB2" "TOMM70A" "USP13" "VIMP"
-## [19] "WHSC1"
+## [1] "ADCK4" "ARL6IP6" "ATP5L" "C19orf52" "C1orf50" "ERO1LB" "FAM134C" "FGFR1OP" "KIAA1033" "MFGE8" "NUPL1"
+## [12] "SIGMAR1" "SPG20" "TCEB1" "TCEB2" "TOMM70A" "USP13" "VIMP" "WHSC1"
\end{verbatim}
\begin{alltt}
\hlkwd{names}\hlstd{(dginnT)}\hlkwb{<-}\hlkwd{c}\hlstd{(}\hlstr{"File"}\hlstd{,} \hlstr{"Name"}\hlstd{,} \hlstr{"Gene.name"}\hlstd{,} \hlstr{"GeneSize"}\hlstd{,} \hlstr{"dginn-primate_NbSpecies"}\hlstd{,} \hlstr{"dginn-primate_omegaM0Bpp"}\hlstd{,}
@@ -496,34 +482,25 @@ Genes under positive selection for at least 4 methods.
\hlstd{tab}\hlopt{$}\hlstd{Gene.name[dginnfulltmp}\hlopt{>=}\hlnum{4} \hlopt{&} \hlkwd{is.na}\hlstd{(dginnfulltmp)}\hlopt{==}\hlstd{F]}
\end{alltt}
\begin{verbatim}
-## [1] "ACADM" "BCS1L" "BRD4" "CDK5RAP2" "CEP135" "CEP68"
-## [7] "CLIP4" "DNMT1" "DPH5" "EMC1" "FYCO1" "GCC2"
-## [13] "GGH" "GHITM" "GIGYF2" "GLA" "GOLGA7" "HECTD1"
-## [19] "IDE" "ITGB1" "LARP1" "LARP4B" "LMAN2" "MARK1"
-## [25] "MIPOL1" "MPHOSPH10" "MYCBP2" "NDUFAF2" "NDUFB9" "PCNT"
-## [31] "POLA1" "PRIM2" "PRKAR2A" "PVR" "REEP6" "RIPK1"
-## [37] "SAAL1" "SEPSECS" "SIRT5" "SLC25A21" "SLC27A2" "TMEM39B"
-## [43] "TOR1AIP1" "TUBGCP2" "UBAP2" "UGGT2" "VPS39" "ZNF318"
+## [1] "ACADM" "BCS1L" "BRD4" "CDK5RAP2" "CEP135" "CEP68" "CLIP4" "DNMT1" "DPH5" "EMC1"
+## [11] "FYCO1" "GCC2" "GGH" "GHITM" "GIGYF2" "GLA" "GOLGA7" "HECTD1" "IDE" "ITGB1"
+## [21] "LARP1" "LARP4B" "LMAN2" "MARK1" "MIPOL1" "MPHOSPH10" "MYCBP2" "NDUFAF2" "NDUFB9" "PCNT"
+## [31] "POLA1" "PRIM2" "PRKAR2A" "PVR" "REEP6" "RIPK1" "SAAL1" "SEPSECS" "SIRT5" "SLC25A21"
+## [41] "SLC27A2" "TMEM39B" "TOR1AIP1" "TUBGCP2" "UBAP2" "UGGT2" "VPS39" "ZNF318"
\end{verbatim}
\begin{alltt}
\hlstd{tab}\hlopt{$}\hlstd{Gene.name[dginnfulltmp}\hlopt{>=}\hlnum{3} \hlopt{&} \hlkwd{is.na}\hlstd{(dginnfulltmp)}\hlopt{==}\hlstd{F]}
\end{alltt}
\begin{verbatim}
-## [1] "ACADM" "ADAM9" "AP2A2" "ATE1" "BCS1L" "BRD4"
-## [7] "BZW2" "CDK5RAP2" "CEP135" "CEP68" "CLIP4" "CNTRL"
-## [13] "DNMT1" "DPH5" "EDEM3" "EIF4E2" "EMC1" "EXOSC2"
-## [19] "FYCO1" "GCC2" "GGH" "GHITM" "GIGYF2" "GLA"
-## [25] "GOLGA7" "GOLGB1" "GORASP1" "HDAC2" "HECTD1" "HS6ST2"
-## [31] "IDE" "ITGB1" "LARP1" "LARP4B" "LARP7" "LMAN2"
-## [37] "MARK1" "MDN1" "MIPOL1" "MOV10" "MPHOSPH10" "MRPS5"
-## [43] "MYCBP2" "NAT14" "NDUFAF2" "NDUFB9" "NGLY1" "NPC2"
-## [49] "PCNT" "PITRM1" "PLAT" "PLOD2" "PMPCB" "POLA1"
-## [55] "POR" "PRIM2" "PRKAR2A" "PTBP2" "PVR" "RAB14"
-## [61] "RAB1A" "RAB2A" "RAP1GDS1" "RBX1" "REEP6" "RIPK1"
-## [67] "RPL36" "SAAL1" "SCCPDH" "SEPSECS" "SIRT5" "SLC25A21"
-## [73] "SLC27A2" "STOM" "TIMM8B" "TMEM39B" "TOR1AIP1" "TRIM59"
-## [79] "TRMT1" "TUBGCP2" "UBAP2" "UGGT2" "USP54" "VPS39"
-## [85] "ZNF318"
+## [1] "ACADM" "ADAM9" "AP2A2" "ATE1" "BCS1L" "BRD4" "BZW2" "CDK5RAP2" "CEP135" "CEP68"
+## [11] "CLIP4" "CNTRL" "DNMT1" "DPH5" "EDEM3" "EIF4E2" "EMC1" "EXOSC2" "FYCO1" "GCC2"
+## [21] "GGH" "GHITM" "GIGYF2" "GLA" "GOLGA7" "GOLGB1" "GORASP1" "HDAC2" "HECTD1" "HS6ST2"
+## [31] "IDE" "ITGB1" "LARP1" "LARP4B" "LARP7" "LMAN2" "MARK1" "MDN1" "MIPOL1" "MOV10"
+## [41] "MPHOSPH10" "MRPS5" "MYCBP2" "NAT14" "NDUFAF2" "NDUFB9" "NGLY1" "NPC2" "PCNT" "PITRM1"
+## [51] "PLAT" "PLOD2" "PMPCB" "POLA1" "POR" "PRIM2" "PRKAR2A" "PTBP2" "PVR" "RAB14"
+## [61] "RAB1A" "RAB2A" "RAP1GDS1" "RBX1" "REEP6" "RIPK1" "RPL36" "SAAL1" "SCCPDH" "SEPSECS"
+## [71] "SIRT5" "SLC25A21" "SLC27A2" "STOM" "TIMM8B" "TMEM39B" "TOR1AIP1" "TRIM59" "TRMT1" "TUBGCP2"
+## [81] "UBAP2" "UGGT2" "USP54" "VPS39" "ZNF318"
\end{verbatim}
\begin{alltt}
\hlstd{tmp}\hlkwb{<-}\hlstd{tab[dginnfulltmp}\hlopt{>=}\hlnum{4} \hlopt{&} \hlkwd{is.na}\hlstd{(dginnfulltmp)}\hlopt{==}\hlstd{F,}
diff --git a/figure/mondrianbats-1.pdf b/figure/mondrianbats-1.pdf
index 9d29c603549f600024351dd2b58857be938c685a..ac09711bd0b2bede7ad26d46dd53fa1d689edf57 100644
GIT binary patch
delta 481
zcmdn2v`uM(1-pr%xuJo9`9ynBI5YYlqv>QTMwNPRe<nkLec!{+9A)9-Gp_x<fIXm7
zWs<_|3I@K886Hf5(~j)V|IWB3W%`?ixwqEePhOTP!FZUh?ubfXol@1y*Bkg(hX@D>
zhCDCXD!f-+^u7B015(}#W_0ZhVcX04mb1Azg<Ez;d07Gbq&ItRx27n|O}-YkX~U`)
z_rr2b7fwpBt!Fzo_l3rM&+U)0mKp~5r7fCmW%t>2=FfRc9i@MYoqYbK{o&^dp7*Dn
zxxTO3+c!ySsqO1CUJKvXnjbU0@bi`)|7)Kj#*-^@VtaZg9kAH4al(nKg^8!8{gt|x
z5Pm<x&fKh>{qn4R{_Kw{Uh(|ty2-?0$8uPsulIq?w{8Q*xlHO8eS^QP$cU{e;j#Pt
zZhFRs7k@Zarz~{XDfC2U`2z!Mm2wr!_FwZ=*n5x7G3j;BT(xNWeD_;>^nEQ~PoA>m
z^+)MBQlI0uX6a=s{bQKDX7A(8%b4cz+FB?WfPg}t0vDJ840;Pg3^7Xs6HGB<^T~|@
iR$|6R=u*ZO7M7DQ3J5crO@1oi#$myws_N?R#svWJ8^oso
delta 492
zcmdm{v{`9_1-qf4fq{vs;Y52;I5YYlqtRq5MwNPBe<nkLz2C$4baTqcq}|HfU44Oh
zg^Q5q1Ya8lb{8L&Mh)*r_qYFU%sHX=@PgUfFSTc~S(Q1=egsZ7__gv?>iWZWVKbAG
z(ylzu*&4i8UHIMd`2yad3+J5LYbJP<&n(T$=8~?}jPkM_&1vTE%O>VsNv_&DMQ>@=
zpY5iRr&CN~>U}yzylR%5U%CEJRI=tnCY>|pz7-QUn|1Gf(GhdN`q7RCd!G5nllSQJ
zOTIh%)y6IQ(z_$Zt2_36znft0^gMgF&6?s<td{~sV>kHD609s*II&@CqTspdf2Hzo
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diff --git a/figure/mondrianbats-2.pdf b/figure/mondrianbats-2.pdf
index a7695719bb6e26d486dffa364920911a944fc71f..2a4011da959a21d438446a622c6deaba5d742290 100644
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delta 484
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diff --git a/figure/mondrianprimates-1.pdf b/figure/mondrianprimates-1.pdf
index 0e4114610d56a9675b46096819ce39164cbce9a3..c1f0484a5303c7879ba74169b79ec965169b2d29 100644
GIT binary patch
delta 49
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diff --git a/figure/mondrianprimates-2.pdf b/figure/mondrianprimates-2.pdf
index 82d9bf88aca8a5e047103562d35363a5af7e4e5b..923646a5f294679c8f165d8f08002655a2845893 100644
GIT binary patch
delta 49
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delta 49
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diff --git a/figure/omegaM7M8-1.pdf b/figure/omegaM7M8-1.pdf
index 010d34114aae5a8c68da4fd30f0116e4d443f1b1..138c8f4c882c01d5f6e952aff835a4b059a03158 100644
GIT binary patch
delta 49
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diff --git a/figure/omegaM7M8_2-1.pdf b/figure/omegaM7M8_2-1.pdf
index 785416a76ce6549bb8fd9e8ec1ef9e637a25adaa..3d38524b7cb31002ee689f9a342ce029ff8dbaf2 100644
GIT binary patch
delta 49
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diff --git a/figure/omegaM7M8_3-1.pdf b/figure/omegaM7M8_3-1.pdf
index b566c5028e22d2c875132b5927abcfd04385085b..5e5663cbf99cf44ff38c20c08e782d1babe547f7 100644
GIT binary patch
delta 49
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diff --git a/figure/shiny-1.pdf b/figure/shiny-1.pdf
index 9bb65c74e1c2b63212cfdc8e174b1a1968ce059e..8c903719411c5bc9cf413b8f5581b951d2b09aa5 100644
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diff --git a/figure/subsetbats-1.pdf b/figure/subsetbats-1.pdf
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diff --git a/figure/subsetbats-2.pdf b/figure/subsetbats-2.pdf
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diff --git a/figure/subsetbats-3.pdf b/figure/subsetbats-3.pdf
index eeaf6c6f84e80956b1872a8357dd0edf47d52ba6..568a0cf23c38b5b96f88cf9a92276dfd4a64ac3a 100644
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diff --git a/figure/subsetprimates-1.pdf b/figure/subsetprimates-1.pdf
index e24c5d72b8ac5b3c2f96f207d0ff4a52ba03a461..82a0e501d24a4cf15d2d52466bc51d57a74c5838 100644
GIT binary patch
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delta 49
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diff --git a/figure/subsetprimates-2.pdf b/figure/subsetprimates-2.pdf
index 751487cee6c481962ecb1e5de28f4f882901c9f6..088b0af6890c24fd5fe5cdb5e285b1d329052f2f 100644
GIT binary patch
delta 49
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delta 49
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diff --git a/figure/tablo-1.pdf b/figure/tablo-1.pdf
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diff --git a/figure/unnamed-chunk-8-1.pdf b/figure/unnamed-chunk-8-1.pdf
index 06724963bc79f39ce858d5947c3321ac64b95147..b880fd9147fa8f8b71771252cd7848e101be8ef7 100644
GIT binary patch
delta 49
wcmdm{yiIw6iJGB-p`nSPnW>?%r6!lYZ+?nPVo9okhKrSvfe}J(V^oYF07i@qmH+?%
delta 49
wcmdm{yiIw6iJF0-fsvV!v9Xb<r6!lYZ+?nPVo9okhKrSvfe}J(V^oYF07kM5m;e9(
diff --git a/geneList_DGINN_full_primate_pos4.txt b/geneList_DGINN_full_primate_pos4.txt
new file mode 100644
index 0000000..2b5ab57
--- /dev/null
+++ b/geneList_DGINN_full_primate_pos4.txt
@@ -0,0 +1,49 @@
+Gene.name dginn-primate_BUSTED dginn-primate_BppM1M2 dginn-primate_BppM7M8 dginn-primate_codemlM1M2 dginn-primate_codemlM7M8
+ACADM Y Y Y Y Y
+BCS1L Y N Y Y Y
+BRD4 Y Y Y N Y
+CDK5RAP2 Y Y Y Y Y
+CEP135 N Y Y Y Y
+CEP68 Y Y Y Y Y
+CLIP4 Y N Y Y Y
+DNMT1 Y Y Y Y Y
+DPH5 N Y Y Y Y
+EMC1 Y Y Y Y Y
+FYCO1 Y Y Y Y Y
+GCC2 Y N Y Y Y
+GGH Y Y Y Y Y
+GHITM N Y Y Y Y
+GIGYF2 Y N Y Y Y
+GLA Y N Y Y Y
+GOLGA7 Y Y Y Y Y
+HECTD1 Y Y Y Y Y
+IDE Y Y Y Y na
+ITGB1 Y Y Y Y Y
+LARP1 Y N Y Y Y
+LARP4B Y N Y Y Y
+LMAN2 Y N Y Y Y
+MARK1 Y Y Y N Y
+MIPOL1 N Y Y Y Y
+MPHOSPH10 Y N Y Y Y
+MYCBP2 Y Y Y Y Y
+NDUFAF2 Y Y Y Y Y
+NDUFB9 Y N Y Y Y
+PCNT Y N Y Y Y
+POLA1 Y Y Y Y na
+PRIM2 Y Y Y Y Y
+PRKAR2A N Y Y Y Y
+PVR Y Y Y Y Y
+REEP6 Y Y Y Y Y
+RIPK1 Y N Y Y Y
+SAAL1 Y N Y Y Y
+SEPSECS Y Y Y Y Y
+SIRT5 N Y Y Y Y
+SLC25A21 N Y Y Y Y
+SLC27A2 N Y Y Y Y
+TMEM39B Y N Y Y Y
+TOR1AIP1 Y Y Y Y Y
+TUBGCP2 Y N Y Y Y
+UBAP2 N Y Y Y Y
+UGGT2 N Y Y Y Y
+VPS39 Y Y Y Y Y
+ZNF318 Y Y Y Y Y
--
GitLab