diff --git a/covid_comp_dataset.Rnw b/covid_comp_dataset.Rnw index b073784c48acb9e26c338bca278776daf23cf7bb..43510b4b3d34863d6c74f62e91baa1308b3ca524 100644 --- a/covid_comp_dataset.Rnw +++ b/covid_comp_dataset.Rnw @@ -227,13 +227,13 @@ for (p in 0:5){ tmp<-tablo$`tmp$Gene.name`[tablo$nbats==0 & tablo$nprimates==1] text(-0.4,-1.2, "p=1/n=0", cex=0.6) -text(seq(from=0.1, to=5.5, length.out = 18), +text(seq(from=0.1, to=5.5, length.out = 19), -1.1, - tmp[1:18], + tmp[1:19], cex=0.4) -text(seq(from=0.1, to=5.5, length.out = length(tmp)-18), +text(seq(from=0.1, to=5.5, length.out = length(tmp)-19), -1.3, - tmp[19:length(tmp)], + tmp[20:length(tmp)], cex=0.4) tmp<-tablo$`tmp$Gene.name`[tablo$nbats==1 & tablo$nprimates==1] diff --git a/covid_comp_dataset.pdf b/covid_comp_dataset.pdf index dc916d8e495c59725a299b140e234f28e3dbbddb..72c61a2d03cad8e61ce50b1b20fff5e95b723cdd 100644 Binary files a/covid_comp_dataset.pdf and b/covid_comp_dataset.pdf differ diff --git a/covid_comp_dataset.tex b/covid_comp_dataset.tex index f0e52874b33d30e7b086295b593ee25ecb498ae6..aea1880853e89bd19286bc0f0e4fd1d816c03c7d 100644 --- a/covid_comp_dataset.tex +++ b/covid_comp_dataset.tex @@ -766,13 +766,13 @@ Analysis were formatted by the script covid\_comp\_script0\_table.Rnw. \begin{alltt} \hlstd{tmp}\hlkwb{<-}\hlstd{tablo}\hlopt{$}\hlstd{`tmp$Gene.name`[tablo}\hlopt{$}\hlstd{nbats}\hlopt{==}\hlnum{0} \hlopt{&} \hlstd{tablo}\hlopt{$}\hlstd{nprimates}\hlopt{==}\hlnum{1}\hlstd{]} \hlkwd{text}\hlstd{(}\hlopt{-}\hlnum{0.4}\hlstd{,}\hlopt{-}\hlnum{1.2}\hlstd{,} \hlstr{"p=1/n=0"}\hlstd{,} \hlkwc{cex}\hlstd{=}\hlnum{0.6}\hlstd{)} -\hlkwd{text}\hlstd{(}\hlkwd{seq}\hlstd{(}\hlkwc{from}\hlstd{=}\hlnum{0.1}\hlstd{,} \hlkwc{to}\hlstd{=}\hlnum{5.5}\hlstd{,} \hlkwc{length.out} \hlstd{=} \hlnum{18}\hlstd{),} +\hlkwd{text}\hlstd{(}\hlkwd{seq}\hlstd{(}\hlkwc{from}\hlstd{=}\hlnum{0.1}\hlstd{,} \hlkwc{to}\hlstd{=}\hlnum{5.5}\hlstd{,} \hlkwc{length.out} \hlstd{=} \hlnum{19}\hlstd{),} \hlopt{-}\hlnum{1.1}\hlstd{,} - \hlstd{tmp[}\hlnum{1}\hlopt{:}\hlnum{18}\hlstd{],} + \hlstd{tmp[}\hlnum{1}\hlopt{:}\hlnum{19}\hlstd{],} \hlkwc{cex}\hlstd{=}\hlnum{0.4}\hlstd{)} -\hlkwd{text}\hlstd{(}\hlkwd{seq}\hlstd{(}\hlkwc{from}\hlstd{=}\hlnum{0.1}\hlstd{,} \hlkwc{to}\hlstd{=}\hlnum{5.5}\hlstd{,} \hlkwc{length.out} \hlstd{=} \hlkwd{length}\hlstd{(tmp)}\hlopt{-}\hlnum{18}\hlstd{),} +\hlkwd{text}\hlstd{(}\hlkwd{seq}\hlstd{(}\hlkwc{from}\hlstd{=}\hlnum{0.1}\hlstd{,} \hlkwc{to}\hlstd{=}\hlnum{5.5}\hlstd{,} \hlkwc{length.out} \hlstd{=} \hlkwd{length}\hlstd{(tmp)}\hlopt{-}\hlnum{19}\hlstd{),} \hlopt{-}\hlnum{1.3}\hlstd{,} - \hlstd{tmp[}\hlnum{19}\hlopt{:}\hlkwd{length}\hlstd{(tmp)],} + \hlstd{tmp[}\hlnum{20}\hlopt{:}\hlkwd{length}\hlstd{(tmp)],} \hlkwc{cex}\hlstd{=}\hlnum{0.4}\hlstd{)} \hlstd{tmp}\hlkwb{<-}\hlstd{tablo}\hlopt{$}\hlstd{`tmp$Gene.name`[tablo}\hlopt{$}\hlstd{nbats}\hlopt{==}\hlnum{1} \hlopt{&} \hlstd{tablo}\hlopt{$}\hlstd{nprimates}\hlopt{==}\hlnum{1}\hlstd{]} diff --git a/figure/mondrianbats-1.pdf b/figure/mondrianbats-1.pdf index 1e4c42e4c2d6c8d4ae943a5bf36b1425ab3b73db..0f199ef1c4ae5c7b88f4eda652285d1be91e664d 100644 Binary files a/figure/mondrianbats-1.pdf and b/figure/mondrianbats-1.pdf differ diff --git a/figure/mondrianbats-2.pdf b/figure/mondrianbats-2.pdf index f9bce87b3da12e8a4f8229e76dfb2f42e06cd161..5de8bf6321ae85013bc7ca14f856cbb6fae00430 100644 Binary files a/figure/mondrianbats-2.pdf and b/figure/mondrianbats-2.pdf differ diff --git a/figure/subsetbats-1.pdf b/figure/subsetbats-1.pdf index 3807111e2a8d7e3862e15d1950f82d3cb3764877..145b995e8d56d89dbdc8e37d8ffbc59bf457243c 100644 Binary files a/figure/subsetbats-1.pdf and b/figure/subsetbats-1.pdf differ diff --git a/figure/subsetbats-2.pdf b/figure/subsetbats-2.pdf index a4102c292ec0af934851a9f8cd83b1177a7cc15b..fe1f9a72174786b7811efa7e91b47b11b8c6291f 100644 Binary files a/figure/subsetbats-2.pdf and b/figure/subsetbats-2.pdf differ diff --git a/figure/subsetbats-3.pdf b/figure/subsetbats-3.pdf index 0c5d3a9239ff422bc7fd03bf80477bc6ab9b453d..f66d8e18984c8b8ee10c955614520130f3304990 100644 Binary files a/figure/subsetbats-3.pdf and b/figure/subsetbats-3.pdf differ diff --git a/figure/tablo-1.pdf b/figure/tablo-1.pdf index e1fb777c4938159545874470fccf268a507b709b..102461546ec34f1aba523439e256bbeeca2042d9 100644 Binary files a/figure/tablo-1.pdf and b/figure/tablo-1.pdf differ diff --git a/figure/unnamed-chunk-3-1.pdf b/figure/unnamed-chunk-3-1.pdf index 0f740accfa35e82b6fcd0b567780c4d26997fea7..f6e4f9f4270fc4c8389f813336679e3d716b24d8 100644 Binary files a/figure/unnamed-chunk-3-1.pdf and b/figure/unnamed-chunk-3-1.pdf differ