From dd5452d1d6f8c2004a8deea1b6835617987706c2 Mon Sep 17 00:00:00 2001
From: lgely <loic.gely@ens-lyon.fr>
Date: Thu, 23 Sep 2021 12:16:00 +0000
Subject: [PATCH] update src/fasta_samplr.nf bact to normal
---
src/fasta_sampler.nf | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/fasta_sampler.nf b/src/fasta_sampler.nf
index 35bd9bef..fd2bb436 100644
--- a/src/fasta_sampler.nf
+++ b/src/fasta_sampler.nf
@@ -9,9 +9,9 @@ publishDir "results/sampling/", mode: 'copy'
file fasta from fasta_file
output:
-file "*_sample.fasta", emit: fasta_sample
+file "*_sample.fasta" into fasta_sample
script:
"""
-head ${fasta} > ${fasta.simpleName}_sample.fasta
+head ${fasta} > ${fasta.baseName}_sample.fasta
"""
--
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