diff --git a/src/fasta_sampler.nf b/src/fasta_sampler.nf index 35bd9befcf5e93bbcd4c36a8236be64e7d240435..fd2bb436d017667e9a9ef65bc2f8e69735339e36 100644 --- a/src/fasta_sampler.nf +++ b/src/fasta_sampler.nf @@ -9,9 +9,9 @@ publishDir "results/sampling/", mode: 'copy' file fasta from fasta_file output: -file "*_sample.fasta", emit: fasta_sample +file "*_sample.fasta" into fasta_sample script: """ -head ${fasta} > ${fasta.simpleName}_sample.fasta +head ${fasta} > ${fasta.baseName}_sample.fasta """