From 5bf3ddc1f3a0ee2377b066cd3be4c43d3a8075b3 Mon Sep 17 00:00:00 2001
From: lgely <loic.gely@ens-lyon.fr>
Date: Thu, 23 Sep 2021 12:06:28 +0000
Subject: [PATCH] Update changed output src/fasta_sampler_tp.nf
---
src/fasta_sampler.nf | 6 ++----
src/fasta_sampler_tp.nf | 7 +++----
2 files changed, 5 insertions(+), 8 deletions(-)
diff --git a/src/fasta_sampler.nf b/src/fasta_sampler.nf
index 99cc0c70..35bd9bef 100644
--- a/src/fasta_sampler.nf
+++ b/src/fasta_sampler.nf
@@ -9,11 +9,9 @@ publishDir "results/sampling/", mode: 'copy'
file fasta from fasta_file
output:
-file "*_sample.fasta" into fasta_sample
+file "*_sample.fasta", emit: fasta_sample
script:
"""
-head ${fasta} > ${fasta.baseName}_sample.fasta
+head ${fasta} > ${fasta.simpleName}_sample.fasta
"""
-}
-
diff --git a/src/fasta_sampler_tp.nf b/src/fasta_sampler_tp.nf
index 329a6a25..47478e4d 100644
--- a/src/fasta_sampler_tp.nf
+++ b/src/fasta_sampler_tp.nf
@@ -9,14 +9,13 @@ process sample_fasta {
input:
file fasta
- output:
- file "sample.fasta", emit: fasta_sample
+output:
+file "*_sample.fasta", emit: fasta_sample
script:
"""
-head ${fasta} > sample.fasta
+head ${fasta} > ${fasta.simpleName}_sample.fasta
"""
-}
workflow {
sample_fasta(fasta_file)
--
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