diff --git a/src/fasta_sampler.nf b/src/fasta_sampler.nf index 99cc0c70557defaaaac9c583070318faced2003a..35bd9befcf5e93bbcd4c36a8236be64e7d240435 100644 --- a/src/fasta_sampler.nf +++ b/src/fasta_sampler.nf @@ -9,11 +9,9 @@ publishDir "results/sampling/", mode: 'copy' file fasta from fasta_file output: -file "*_sample.fasta" into fasta_sample +file "*_sample.fasta", emit: fasta_sample script: """ -head ${fasta} > ${fasta.baseName}_sample.fasta +head ${fasta} > ${fasta.simpleName}_sample.fasta """ -} - diff --git a/src/fasta_sampler_tp.nf b/src/fasta_sampler_tp.nf index 329a6a25dd972265727e07f93bae123ace37e8e2..47478e4d038d1113d997b90060e116991cb4b865 100644 --- a/src/fasta_sampler_tp.nf +++ b/src/fasta_sampler_tp.nf @@ -9,14 +9,13 @@ process sample_fasta { input: file fasta - output: - file "sample.fasta", emit: fasta_sample +output: +file "*_sample.fasta", emit: fasta_sample script: """ -head ${fasta} > sample.fasta +head ${fasta} > ${fasta.simpleName}_sample.fasta """ -} workflow { sample_fasta(fasta_file)