From b9c08af5b667065db2cd692f90ef4f4fe8396496 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Fri, 25 May 2018 16:23:07 +0200
Subject: [PATCH] add docker files for tophat:2.1.1
---
src/nf_modules/TopHat/2.1.1/Dockerfile | 9 +++++++++
src/nf_modules/TopHat/2.1.1/docker_init.sh | 2 ++
2 files changed, 11 insertions(+)
create mode 100644 src/nf_modules/TopHat/2.1.1/Dockerfile
create mode 100755 src/nf_modules/TopHat/2.1.1/docker_init.sh
diff --git a/src/nf_modules/TopHat/2.1.1/Dockerfile b/src/nf_modules/TopHat/2.1.1/Dockerfile
new file mode 100644
index 0000000..82d3c5d
--- /dev/null
+++ b/src/nf_modules/TopHat/2.1.1/Dockerfile
@@ -0,0 +1,9 @@
+FROM ubuntu:18.04
+MAINTAINER Laurent Modolo
+
+ENV TOPHAT_VERSION=2.1.1
+ENV PACKAGES tophat=${BOWTIE2_VERSION}*
+
+RUN apt-get update && \
+ apt-get install -y --no-install-recommends ${PACKAGES} && \
+ apt-get clean
diff --git a/src/nf_modules/TopHat/2.1.1/docker_init.sh b/src/nf_modules/TopHat/2.1.1/docker_init.sh
new file mode 100755
index 0000000..715677f
--- /dev/null
+++ b/src/nf_modules/TopHat/2.1.1/docker_init.sh
@@ -0,0 +1,2 @@
+#!/bin/sh
+docker build src/nf_modules/TopHat/2.1.1 -t 'tophat:2.1.1'
--
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