From 7bb1e1d0c691d38312ffbb3c50bf38de46b028fa Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Wed, 30 May 2018 12:02:47 +0200
Subject: [PATCH] Kallisto/0.43.1: install file for docker
---
src/nf_modules/Kallisto/0.43.1/Dockerfile | 15 +++++++++++++++
src/nf_modules/Kallisto/0.43.1/docker_init.sh | 2 ++
2 files changed, 17 insertions(+)
create mode 100644 src/nf_modules/Kallisto/0.43.1/Dockerfile
create mode 100755 src/nf_modules/Kallisto/0.43.1/docker_init.sh
diff --git a/src/nf_modules/Kallisto/0.43.1/Dockerfile b/src/nf_modules/Kallisto/0.43.1/Dockerfile
new file mode 100644
index 0000000..68a731a
--- /dev/null
+++ b/src/nf_modules/Kallisto/0.43.1/Dockerfile
@@ -0,0 +1,15 @@
+FROM ubuntu:18.04
+MAINTAINER Laurent Modolo
+
+ENV KALLISTO_VERSION=0.43.1
+ENV PACKAGES curl=7.58.0* \
+ ca-certificates=20180409
+
+RUN apt-get update && \
+ apt-get install -y --no-install-recommends ${PACKAGES} && \
+ apt-get clean
+
+RUN curl -k -L https://github.com/pachterlab/kallisto/releases/download/v${KALLISTO_VERSION}/kallisto_linux-v${KALLISTO_VERSION}.tar.gz -o kallisto_linux-v${KALLISTO_VERSION}.tar.gz && \
+tar xzf kallisto_linux-v${KALLISTO_VERSION}.tar.gz && \
+cp kallisto_linux-v${KALLISTO_VERSION}/kallisto /usr/bin && \
+rm -Rf kallisto_linux-v${KALLISTO_VERSION}*
diff --git a/src/nf_modules/Kallisto/0.43.1/docker_init.sh b/src/nf_modules/Kallisto/0.43.1/docker_init.sh
new file mode 100755
index 0000000..af8c765
--- /dev/null
+++ b/src/nf_modules/Kallisto/0.43.1/docker_init.sh
@@ -0,0 +1,2 @@
+#!/bin/sh
+docker build src/nf_modules/Kallisto/0.43.1 -t 'kallisto:0.43.1'
--
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