diff --git a/src/RNA_Seq.nf b/src/RNA_Seq.nf index cdfcaa6b07971207261c8c107f5b01cabb0bf0b9..35dd581c1914967be681397d367ccdd5f31afb92 100644 --- a/src/RNA_Seq.nf +++ b/src/RNA_Seq.nf @@ -11,8 +11,6 @@ */ params.fastq = "$baseDir/data/fastq/*_{1,2}.fastq" -params.fasta = "$baseDir/data/fasta/*.fasta" -params.bed = "$baseDir/data/annot/*.bed" log.info "fastq files : ${params.fastq}" @@ -77,7 +75,8 @@ UrQt --t 20 --m ${task.cpus} --gz \ */ /* fasta extraction */ - +params.fasta = "$baseDir/data/fasta/*.fasta" +params.bed = "$baseDir/data/annot/*.bed" log.info "fasta file : ${params.fasta}" log.info "bed file : ${params.bed}"