diff --git a/src/RNA_Seq.config b/src/RNA_Seq.config
index c63389be26d337404c906f95ea4d85389d350fb9..60bee50b276cbd4ba2795658c102112864fb367a 100644
--- a/src/RNA_Seq.config
+++ b/src/RNA_Seq.config
@@ -78,3 +78,44 @@ profiles {
     }
   }
 }
+
+profiles {
+  docker {
+    docker.temp = 'auto'
+    docker.enabled = true
+    process {
+      $index_fasta {
+        container = "kallisto:0.43.1"
+      }
+      $mapping_fastq {
+        container = "kallisto:0.43.1"
+      }
+    }
+  }
+  sge {
+    process{
+      $index_fasta {
+        beforeScript = "module purge; module load Kallisto/0.43.1"
+        executor = "sge"
+        cpus = 1
+        memory = "5GB"
+        time = "6h"
+        queueSize = 1000
+        pollInterval = '60sec'
+        queue = 'h6-E5-2667v4deb128'
+        penv = 'openmp8'
+      }
+      $mapping_fastq {
+        beforeScript = "module purge; module load Kallisto/0.43.1"
+        executor = "sge"
+        cpus = 4
+        memory = "5GB"
+        time = "6h"
+        queueSize = 1000
+        pollInterval = '60sec'
+        queue = 'h6-E5-2667v4deb128'
+        penv = 'openmp8'
+      }
+    }
+  }
+}