From b89b3a759d7a6ac67ccb03df3ea1cafb998ab5f6 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Wed, 7 Feb 2018 15:51:54 +0100
Subject: [PATCH] SRAtoolkit install: fix to copy ncbi folder
---
apps/SRAtoolkit/install_2.8.2.sh | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/apps/SRAtoolkit/install_2.8.2.sh b/apps/SRAtoolkit/install_2.8.2.sh
index 5691b64..390850b 100644
--- a/apps/SRAtoolkit/install_2.8.2.sh
+++ b/apps/SRAtoolkit/install_2.8.2.sh
@@ -40,5 +40,5 @@ http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/${SRATOOLKIT_VERSION}/sratoolkit.${SRA
curl -k -L http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/${SRATOOLKIT_VERSION}/sratoolkit.${SRATOOLKIT_VERSION}-ubuntu64.tar.gz -o sratoolkit.${SRATOOLKIT_VERSION}-ubuntu64.tar.gz
tar xvf sratoolkit.${SRATOOLKIT_VERSION}-ubuntu64.tar.gz
mkdir -p ${SRATOOLKIT_VERSION}/bin
-cp sratoolkit.${SRATOOLKIT_VERSION}-ubuntu64/bin/* ${SRATOOLKIT_VERSION}/bin
+cp -R sratoolkit.${SRATOOLKIT_VERSION}-ubuntu64/bin/* ${SRATOOLKIT_VERSION}/bin
rm -Rf sratoolkit.${SRATOOLKIT_VERSION}-ubuntu64.tar.gz sratoolkit.${SRATOOLKIT_VERSION}-ubuntu64
--
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