diff --git a/apps/SRAtoolkit/install_2.8.2.sh b/apps/SRAtoolkit/install_2.8.2.sh new file mode 100644 index 0000000000000000000000000000000000000000..5691b641025a14acce4e5f2d4fea41afdbc8629a --- /dev/null +++ b/apps/SRAtoolkit/install_2.8.2.sh @@ -0,0 +1,44 @@ +#!/bin/bash +# Copyright laurent modolo for the LBMC UMR 5239 ©. +# contributor(s) : laurent modolo (2017) +# +# laurent.modolo@ens-lyon.fr +# +# This software is a computer program whose purpose is to manage dated file +# names in complience with the bioinformatic good practices used in the LBMC. +# +# This software is governed by the CeCILL license under French law and +# abiding by the rules of distribution of free software. You can use, +# modify and/ or redistribute the software under the terms of the CeCILL +# license as circulated by CEA, CNRS and INRIA at the following URL +# "http://www.cecill.info". +# +# As a counterpart to the access to the source code and rights to copy, +# modify and redistribute granted by the license, users are provided only +# with a limited warranty and the software's author, the holder of the +# economic rights, and the successive licensors have only limited +# liability. +# +# In this respect, the user's attention is drawn to the risks associated +# with loading, using, modifying and/or developing or reproducing the +# software by the user in light of its specific status of free software, +# that may mean that it is complicated to manipulate, and that also +# therefore means that it is reserved for developers and experienced +# professionals having in-depth computer knowledge. Users are therefore +# encouraged to load and test the software's suitability as regards their +# requirements in conditions enabling the security of their systems and/or +# data to be ensured and, more generally, to use and operate it in the +# same conditions as regards security. +# +# The fact that you are presently reading this means that you have had +# knowledge of the CeCILL license and that you accept its terms. + +source ../build_env.sh + +SRATOOLKIT_VERSION=2.8.2-1 +http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/${SRATOOLKIT_VERSION}/sratoolkit.${SRATOOLKIT_VERSION}-ubuntu64.tar.gz +curl -k -L http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/${SRATOOLKIT_VERSION}/sratoolkit.${SRATOOLKIT_VERSION}-ubuntu64.tar.gz -o sratoolkit.${SRATOOLKIT_VERSION}-ubuntu64.tar.gz +tar xvf sratoolkit.${SRATOOLKIT_VERSION}-ubuntu64.tar.gz +mkdir -p ${SRATOOLKIT_VERSION}/bin +cp sratoolkit.${SRATOOLKIT_VERSION}-ubuntu64/bin/* ${SRATOOLKIT_VERSION}/bin +rm -Rf sratoolkit.${SRATOOLKIT_VERSION}-ubuntu64.tar.gz sratoolkit.${SRATOOLKIT_VERSION}-ubuntu64