From 466069c005b51a07647e1488fa3a924f6ab99985 Mon Sep 17 00:00:00 2001
From: Gilquin <laurent.gilquin@ens-lyon.fr>
Date: Tue, 16 Apr 2024 15:34:49 +0200
Subject: [PATCH] fix: remove unused option

useless n.start option in FindClusters when algorithm=4
---
 scripts/5hAPF.R | 2 +-
 scripts/9396.R  | 2 +-
 scripts/WP.R    | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/scripts/5hAPF.R b/scripts/5hAPF.R
index 7f60021..d14a416 100644
--- a/scripts/5hAPF.R
+++ b/scripts/5hAPF.R
@@ -155,7 +155,7 @@ Sobject <- FindNeighbors(
 # apply Leiden clustering algorithm for several resolutions
 res_vec <- seq(0.1, 1, 0.05)
 Sobject <- FindClusters(
-  Sobject, algorithm = 4, resolution = res_vec, n.start = 100, n.iter = 100,
+  Sobject, algorithm = 4, resolution = res_vec, n.iter = 100,
   random.seed = 666
   )
 
diff --git a/scripts/9396.R b/scripts/9396.R
index 120c68b..069fe2f 100644
--- a/scripts/9396.R
+++ b/scripts/9396.R
@@ -155,7 +155,7 @@ Sobject <- FindNeighbors(
 # apply Leiden clustering algorithm for several resolutions
 res_vec <- seq(0.1, 1, 0.05)
 Sobject <- FindClusters(
-  Sobject, algorithm = 4, resolution = res_vec, n.start = 100, n.iter = 100,
+  Sobject, algorithm = 4, resolution = res_vec, n.iter = 100,
   random.seed = 666
 )
 
diff --git a/scripts/WP.R b/scripts/WP.R
index 40fb222..e80a8dd 100644
--- a/scripts/WP.R
+++ b/scripts/WP.R
@@ -155,7 +155,7 @@ Sobject <- FindNeighbors(
 # apply Leiden clustering algorithm for several resolutions
 res_vec <- seq(0.1, 1, 0.05)
 Sobject <- FindClusters(
-  Sobject, algorithm = 4, resolution = res_vec, n.start = 100, n.iter = 100,
+  Sobject, algorithm = 4, resolution = res_vec, n.iter = 100,
   random.seed = 666
   )
 
-- 
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