diff --git a/src/RNASeq.config b/src/RNASeq.config
index 0a004efcd48288571b3d37927ec1b874ce5577dd..87be79cc11fb9fd89a8f9ca4703e728642a05a73 100644
--- a/src/RNASeq.config
+++ b/src/RNASeq.config
@@ -52,4 +52,31 @@ profiles {
   }
 }
 
+profiles {
+  docker {
+    docker.temp = 'auto'
+    docker.enabled = true
+    process {
+      $fasta_from_bed {
+        container = "bedtools:2.25.0"
+      }
+    }
+  }
+  sge {
+    process{
+      $fasta_from_bed {
+        beforeScript = "module purge; module load BEDtools/2.25.0"
+        executor = "sge"
+        cpus = 1
+        memory = "5GB"
+        time = "6h"
+        queueSize = 1000
+        pollInterval = '60sec'
+        queue = 'h6-E5-2667v4deb128'
+        penv = 'openmp8'
+      }
+    }
+  }
+}
+