From 7d7a2be9b46ca267d126619d91ce430a8667ac56 Mon Sep 17 00:00:00 2001
From: hpolvech <helene.polveche@ens-lyon.fr>
Date: Wed, 6 Jun 2018 14:41:43 +0000
Subject: [PATCH] RNASeq.config : trimming
---
src/RNASeq.config | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
diff --git a/src/RNASeq.config b/src/RNASeq.config
index 133f730..0a004ef 100644
--- a/src/RNASeq.config
+++ b/src/RNASeq.config
@@ -25,3 +25,31 @@ profiles {
}
}
+profiles {
+ docker {
+ docker.temp = 'auto'
+ docker.enabled = true
+ process {
+ $trimming {
+ container = "urqt:d62c1f8"
+ }
+ }
+ }
+ sge {
+ process{
+ $trimming {
+ beforeScript = "module purge; module load UrQt/d62c1f8"
+ executor = "sge"
+ cpus = 4
+ memory = "5GB"
+ time = "6h"
+ queueSize = 1000
+ pollInterval = '60sec'
+ queue = 'h6-E5-2667v4deb128'
+ penv = 'openmp8'
+ }
+ }
+ }
+}
+
+
--
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