diff --git a/src/RNASeq.config b/src/RNASeq.config index 133f7305d326a847bdd16937fd1c7dfef6c9a9a9..0a004efcd48288571b3d37927ec1b874ce5577dd 100644 --- a/src/RNASeq.config +++ b/src/RNASeq.config @@ -25,3 +25,31 @@ profiles { } } +profiles { + docker { + docker.temp = 'auto' + docker.enabled = true + process { + $trimming { + container = "urqt:d62c1f8" + } + } + } + sge { + process{ + $trimming { + beforeScript = "module purge; module load UrQt/d62c1f8" + executor = "sge" + cpus = 4 + memory = "5GB" + time = "6h" + queueSize = 1000 + pollInterval = '60sec' + queue = 'h6-E5-2667v4deb128' + penv = 'openmp8' + } + } + } +} + +