diff --git a/src/nf_modules/Salmon/0.8.2/Dockerfile b/src/nf_modules/Salmon/0.8.2/Dockerfile new file mode 100644 index 0000000000000000000000000000000000000000..31bb28ecce7ec5e5e70baf591ec418a1258bd2dd --- /dev/null +++ b/src/nf_modules/Salmon/0.8.2/Dockerfile @@ -0,0 +1,15 @@ +FROM ubuntu:18.04 +MAINTAINER Laurent Modolo + +ENV SALMON_VERSION=0.8.2 +ENV PACKAGES curl=7.58.0* \ + ca-certificates=20180409 + +RUN apt-get update && \ + apt-get install -y --no-install-recommends ${PACKAGES} && \ + apt-get clean + +RUN curl -k -L https://github.com/COMBINE-lab/salmon/releases/download/v${SALMON_VERSION}/Salmon-${SALMON_VERSION}_linux_x86_64.tar.gz -o Salmon-${SALMON_VERSION}_linux_x86_64.tar.gz && \ +tar xzf Salmon-${SALMON_VERSION}_linux_x86_64.tar.gz && \ +mv Salmon-${SALMON_VERSION}_linux_x86_64/bin/* /usr/bin/ && \ +rm -Rf Salmon-${SALMON_VERSION}* diff --git a/src/nf_modules/Salmon/0.8.2/docker_init.sh b/src/nf_modules/Salmon/0.8.2/docker_init.sh new file mode 100755 index 0000000000000000000000000000000000000000..ecfa970f86b85222cf7cac47d369fa1c2e645662 --- /dev/null +++ b/src/nf_modules/Salmon/0.8.2/docker_init.sh @@ -0,0 +1,2 @@ +#!/bin/sh +docker build src/nf_modules/Salmon/0.8.2 -t 'salmon:0.8.2'