LBMC issueshttps://gitbio.ens-lyon.fr/groups/LBMC/-/issues2021-04-19T11:33:12+02:00https://gitbio.ens-lyon.fr/LBMC/yvertlab/mylabstocks/-/issues/108Absurd path display in header of Blast view2021-04-19T11:33:12+02:00Gael YvertAbsurd path display in header of Blast viewStrange links and paths are displayed at the top of the blast view (in blue, after Dashboard):
![Screenshot_from_2021-04-19_11-30-42](/uploads/b30c83b39c13cb8196866632e3afaefb/Screenshot_from_2021-04-19_11-30-42.png)Strange links and paths are displayed at the top of the blast view (in blue, after Dashboard):
![Screenshot_from_2021-04-19_11-30-42](/uploads/b30c83b39c13cb8196866632e3afaefb/Screenshot_from_2021-04-19_11-30-42.png)https://gitbio.ens-lyon.fr/LBMC/yvertlab/mylabstocks/-/issues/71Add links to Yvert lab and git project in footer2022-06-21T14:56:31+02:00Gael YvertAdd links to Yvert lab and git project in footerv2.2https://gitbio.ens-lyon.fr/LBMC/yvertlab/mylabstocks/-/issues/145Add logo to frontend's layout2022-06-02T12:48:27+02:00Gael YvertAdd logo to frontend's layoutv2.2https://gitbio.ens-lyon.fr/LBMC/yvertlab/mylabstocks/-/issues/48add middleware authentification on route to blast2022-06-21T14:59:09+02:00Gael Yvertadd middleware authentification on route to blastv2.2https://gitbio.ens-lyon.fr/LBMC/yvertlab/atestprojectforgh/-/issues/3and yet another issue2022-02-08T17:10:15+01:00Gael Yvertand yet another issueTo see what happens to a closed one.To see what happens to a closed one.a test milestonehttps://gitbio.ens-lyon.fr/LBMC/yvertlab/atestprojectforgh/-/issues/2another issue2022-02-08T17:11:10+01:00Gael Yvertanother issuea test milestonehttps://gitbio.ens-lyon.fr/LBMC/yvertlab/atestprojectforgh/-/issues/1a test issue2022-02-08T17:11:28+01:00Gael Yverta test issueJust open this issue to see if/how it can be imported/synchronized on GitHubJust open this issue to see if/how it can be imported/synchronized on GitHubGael YvertGael Yverthttps://gitbio.ens-lyon.fr/LBMC/yvertlab/mylabstocks/-/issues/133Avoid overriding ALL voyager's controllers2021-06-29T17:56:35+02:00Gael YvertAvoid overriding ALL voyager's controllersAt some point we overrode ALL voyager's controllers, by editing the configuration file `config/voyager.php` with:
```php
'controllers' => [
'namespace' => 'App\\Http\\Controllers\\Voyager'
/* 'namespace' => 'TCG\\Voyager\...At some point we overrode ALL voyager's controllers, by editing the configuration file `config/voyager.php` with:
```php
'controllers' => [
'namespace' => 'App\\Http\\Controllers\\Voyager'
/* 'namespace' => 'TCG\\Voyager\\Http\\Controllers',*/
],
```
This is [not recommended](https://voyager-docs.devdojo.com/customization/overriding-files) by the voyager's developers: possible problems with later updates.
We must see exactly what differs between these locally-placed controllers and those in /vendor/tcg/, and override only what is strictly necessary.Gael YvertGael Yverthttps://gitbio.ens-lyon.fr/LBMC/yvertlab/mylabstocks/-/issues/21build a manyToMany relationship between oligos and plasmids2021-12-16T10:06:45+01:00Gael Yvertbuild a manyToMany relationship between oligos and plasmidsv2.2https://gitbio.ens-lyon.fr/LBMC/yvertlab/mylabstocks/-/issues/22build a manyTomany relationship between oligos and strains2021-12-16T10:06:37+01:00Gael Yvertbuild a manyTomany relationship between oligos and strainsv2.2https://gitbio.ens-lyon.fr/LBMC/yvertlab/mylabstocks/-/issues/23build a manyTomany relationship between plasmids and strains2022-01-31T13:58:27+01:00Gael Yvertbuild a manyTomany relationship between plasmids and strainsv2.2https://gitbio.ens-lyon.fr/LBMC/yvertlab/mylabstocks/-/issues/61Cannot track roles functionality table2021-06-18T15:06:26+02:00Gael YvertCannot track roles functionality tableWhen retsoring the roles tables from seeder, I get:
```
SQLSTATE[23000]: Integrity constraint violation: 1451 Cannot delete or update a parent row: a foreign key constraint fails (`labstocks_db`.`users`, CONSTRAINT `users_role_id_foreign...When retsoring the roles tables from seeder, I get:
```
SQLSTATE[23000]: Integrity constraint violation: 1451 Cannot delete or update a parent row: a foreign key constraint fails (`labstocks_db`.`users`, CONSTRAINT `users_role_id_foreign` FOREIGN KEY (`role_id`) REFERENCES `roles` (`id`)) (SQL: delete from `roles`)
```
We need to find a way to track the content of the roles table despite the role_id ./. users dependency.Upgrade voyager to v2.0https://gitbio.ens-lyon.fr/LBMC/yvertlab/mylabstocks/-/issues/105check that $seq is dna2021-06-11T17:09:26+02:00Gael Yvertcheck that $seq is dnaTo avoid bug issues, it is safe to verify that a string is dna before passing it to blast or plasmidmap drawing etc...To avoid bug issues, it is safe to verify that a string is dna before passing it to blast or plasmidmap drawing etc...https://gitbio.ens-lyon.fr/LBMC/yvertlab/mylabstocks/-/issues/67do not display the duplicate button in Users browser, nor in Roles2021-06-18T09:13:00+02:00Gael Yvertdo not display the duplicate button in Users browser, nor in RolesBecause we do NOT want to duplicate users (and therefore passwords, roles....) and because Method TCG\Voyager\Http\Controllers\VoyagerUserController::duplicate does not exist.Because we do NOT want to duplicate users (and therefore passwords, roles....) and because Method TCG\Voyager\Http\Controllers\VoyagerUserController::duplicate does not exist.Upgrade voyager to v2.0https://gitbio.ens-lyon.fr/LBMC/yvertlab/mylabstocks/-/issues/120duplicate does not duplicate OLD values from dropdowns2021-06-18T09:10:24+02:00Gael Yvertduplicate does not duplicate OLD values from dropdownsUpgrade voyager to v2.0https://gitbio.ens-lyon.fr/LBMC/yvertlab/mylabstocks/-/issues/136establish relationships in events' BREAD2021-07-15T17:44:19+02:00Gael Yvertestablish relationships in events' BREAD- Add relationship between events and data_types.
- Add a `item_id` column that will store the id of the data_type for which the event occurred.
- Propose event types directly from DropDown menu (options). We don't need the event_types t...- Add relationship between events and data_types.
- Add a `item_id` column that will store the id of the data_type for which the event occurred.
- Propose event types directly from DropDown menu (options). We don't need the event_types table.
- Offer an upgrade procedure to re-import the data stored in pipet_events into the events table with links to pipets. Indeed, after upgrading from v1 to v2.0.1, what was in pipet_histories is now in table pipet_events. We must store this as `events` and then drop the pipet_events table.https://gitbio.ens-lyon.fr/LBMC/yvertlab/mylabstocks/-/issues/160Fix output date format when exporting to .csv file2022-06-21T15:33:11+02:00Gael YvertFix output date format when exporting to .csv fileCurrently, the format is not compatible with import into MySQL. So if we export and then import back in, we get an error. See issue #159.Currently, the format is not compatible with import into MySQL. So if we export and then import back in, we get an error. See issue #159.v2.2Gael YvertGael Yverthttps://gitbio.ens-lyon.fr/LBMC/hub/git_borg_linker/-/issues/11FPT HTTP handling2023-03-02T14:44:47+01:00nfontrodFPT HTTP handlingAdd ftp and http uri for cloneAdd ftp and http uri for clonehttps://gitbio.ens-lyon.fr/LBMC/yvertlab/mylabstocks/-/issues/86Home page quick access not appropriate if permissions are not adequate.2022-06-21T14:55:33+02:00Gael YvertHome page quick access not appropriate if permissions are not adequate.Interrogate permissions to adapt the content of the "quick access"Interrogate permissions to adapt the content of the "quick access"https://gitbio.ens-lyon.fr/LBMC/yvertlab/mylabstocks/-/issues/169How to export selected plasmids to a spreadsheet file?2022-12-15T17:15:01+01:00Zhiping XieHow to export selected plasmids to a spreadsheet file?Currently (v2.0.7), when exporting plasmids in the backend, all plasmids in the database are exported. Is there a way to export only plasmids selected by user, or filtered by a search term, instead of everything?Currently (v2.0.7), when exporting plasmids in the backend, all plasmids in the database are exported. Is there a way to export only plasmids selected by user, or filtered by a search term, instead of everything?v2.2