LBMC issueshttps://gitbio.ens-lyon.fr/groups/LBMC/-/issues2023-03-02T14:37:12+01:00https://gitbio.ens-lyon.fr/LBMC/hub/git_borg_linker/-/issues/9Push and pull issue2023-03-02T14:37:12+01:00nfontrodPush and pull issueIf someone has commited some results on remote folder and if I have particular commits defined locally, the pull removes my changes and the push discard the change of other !!If someone has commited some results on remote folder and if I have particular commits defined locally, the pull removes my changes and the push discard the change of other !!nfontrodnfontrodhttps://gitbio.ens-lyon.fr/LBMC/hub/git_borg_linker/-/issues/10Push and Pull2023-03-02T14:41:30+01:00nfontrodPush and PullThe rights of files are not handled properly in push and pull commandsThe rights of files are not handled properly in push and pull commandshttps://gitbio.ens-lyon.fr/LBMC/hub/git_borg_linker/-/issues/11FPT HTTP handling2023-03-02T14:44:47+01:00nfontrodFPT HTTP handlingAdd ftp and http uri for cloneAdd ftp and http uri for clonehttps://gitbio.ens-lyon.fr/LBMC/RMI2/flexi_splitter/-/issues/3Improve speed by using chunks2023-09-22T16:12:52+02:00elabaronImprove speed by using chunkshttps://gitbio.ens-lyon.fr/LBMC/RMI2/flexi_splitter/-/issues/5Warning if length of barcode coord does not correspond to the lenght of the s...2023-09-25T15:35:34+02:00elabaronWarning if length of barcode coord does not correspond to the lenght of the sequenceJe pense que ce que tu devrais faire aussi, c'est un warning, indiquant que les positions du barcode sont incompatibles avec la séquence donnée dans le yml, ça pourrait aider l'utilisateur à vite fait comprendre qu'un truc cloche.Je pense que ce que tu devrais faire aussi, c'est un warning, indiquant que les positions du barcode sont incompatibles avec la séquence donnée dans le yml, ça pourrait aider l'utilisateur à vite fait comprendre qu'un truc cloche.https://gitbio.ens-lyon.fr/LBMC/yvertlab/mylabstocks/-/issues/174upgrade to Laravel 102024-02-02T13:58:10+01:00Gael Yvertupgrade to Laravel 10Of course, this should be solved AFTER solving issue #163
Apparently, Voyager became compatible with Laravel 10 when version 3.7 was released, see [this discussion](https://github.com/thedevdojo/voyager/issues/5740). So we should first...Of course, this should be solved AFTER solving issue #163
Apparently, Voyager became compatible with Laravel 10 when version 3.7 was released, see [this discussion](https://github.com/thedevdojo/voyager/issues/5740). So we should first upgrade voyager before going to Laravel 10.Gael YvertGael Yverthttps://gitbio.ens-lyon.fr/LBMC/yvertlab/vortex/plasticity_mutation/HTRfit/-/issues/9Important bugs with simulations2024-02-22T17:46:31+01:00fduveauImportant bugs with simulationsI noticed two unexpected behaviors while testing different value of mu and sd in init_variable and add_interaction functions.
Everything looks fine when I change sd for all variables (in my case environment, genotype and the interaction)...I noticed two unexpected behaviors while testing different value of mu and sd in init_variable and add_interaction functions.
Everything looks fine when I change sd for all variables (in my case environment, genotype and the interaction) -> I can see on identity plots that values of parameters are more spread, and R2 are larger when I increase sd for all variables.
However, this is not the case when I change sd of a single variable: for example when I used a high sd for one variable and a low sd for the other variable, then identity plots look the same for both variables, with wide variation of actual and estimated parameters and good R2 values. This is not normal (I should get smaller R2 and smaller actual parameters values for the variable with low sd.
The second problem I noticed is that R2 values on all identity plots were much higher when I included an interaction term in the model (while keeping everything else the same), even when the sd and mu for interaction were very low. I think this is not normal and may be related to the first problem.Arnaud DuvermyArnaud Duvermy