diff --git a/Makefile b/Makefile index 2464d0809475e351098a7af8dc2a46686f221dae..bf97359be99b94694869d539a57eb2ac05e92378 100644 --- a/Makefile +++ b/Makefile @@ -1,7 +1,8 @@ all: public/ \ public/index.html \ public/Practical_a.html \ - public/Practical_b.html + public/Practical_b.html \ + public/Practical_c.html public/: cp -R img public/ && cp -R www public/ @@ -18,6 +19,11 @@ public/Practical_b.html: public/ Practical_b.Rmd cp practical_b.Rdata public/ cp Practical_b.Rmd public/ +public/Practical_c.html: public/ Practical_c.Rmd + Rscript -e 'rmarkdown::render("Practical_c.Rmd", output_dir = "public/")' + cp practical_c.Rdata public/ + cp Practical_c.Rmd public/ + clean: sudo rm -r local public diff --git a/Practical_c.Rmd b/Practical_c.Rmd index 396d9c54813abc091b60a5eab7d7df1533cbb63e..fd258917c7cfae9d29745d26e6502ff51400d502 100644 --- a/Practical_c.Rmd +++ b/Practical_c.Rmd @@ -131,12 +131,12 @@ We will use data stored in the `practical_c.RData` file. ```{r, include=F} # load data -data_file <- "practical_c.RData" +data_file <- "practical_c.Rdata" data_list <- load(data_file) ``` ```{r, eval=F} -# data_list <- load(url("https://lbmc.gitbiopages.ens-lyon.fr/hub/formations/ens_m1_ml/practical_c.Rdata"), verbose = T) +data_list <- load(url("https://lbmc.gitbiopages.ens-lyon.fr/hub/formations/ens_m1_ml/practical_c.Rdata"), verbose = T) ``` It contains the following objects: diff --git a/practical_c.RData b/practical_c.Rdata similarity index 100% rename from practical_c.RData rename to practical_c.Rdata diff --git a/practical_c_prepa.R b/practical_c_prepa.R index 1a38bea754a0bdd035f32b8ec9e188362f4b7b02..d3dd54de60f0641fe9d476327f26fed41db471fc 100644 --- a/practical_c_prepa.R +++ b/practical_c_prepa.R @@ -285,7 +285,7 @@ dim(yeast_av_data) #### save data #### -file_name <- "practical_c.RData" +file_name <- "practical_c.Rdata" save( list = c("gt_data", "morpho_data", "strain_id", "yeast_data", "yeast_av_data"),