From 3631e459e143dee012b6978b30cf7eef0a7ebc35 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Fri, 25 May 2018 16:20:09 +0200
Subject: [PATCH] add docker files for SRAtoolkit:2.8.2
---
src/nf_modules/SRAtoolkit/2.8.2/Dockerfile | 9 +++++++++
src/nf_modules/SRAtoolkit/2.8.2/docker_init.sh | 2 ++
2 files changed, 11 insertions(+)
create mode 100644 src/nf_modules/SRAtoolkit/2.8.2/Dockerfile
create mode 100755 src/nf_modules/SRAtoolkit/2.8.2/docker_init.sh
diff --git a/src/nf_modules/SRAtoolkit/2.8.2/Dockerfile b/src/nf_modules/SRAtoolkit/2.8.2/Dockerfile
new file mode 100644
index 0000000..55622ef
--- /dev/null
+++ b/src/nf_modules/SRAtoolkit/2.8.2/Dockerfile
@@ -0,0 +1,9 @@
+FROM ubuntu:18.04
+MAINTAINER Laurent Modolo
+
+ENV SRATOOLKIT_VERSION=2.8.2
+ENV PACKAGES sra-toolkit=${SRATOOLKIT_VERSION}*
+
+RUN apt-get update && \
+ apt-get install -y --no-install-recommends ${PACKAGES} && \
+ apt-get clean
diff --git a/src/nf_modules/SRAtoolkit/2.8.2/docker_init.sh b/src/nf_modules/SRAtoolkit/2.8.2/docker_init.sh
new file mode 100755
index 0000000..07871a2
--- /dev/null
+++ b/src/nf_modules/SRAtoolkit/2.8.2/docker_init.sh
@@ -0,0 +1,2 @@
+#!/bin/sh
+docker build src/nf_modules/SRAtoolkit/2.8.2 -t 'sratoolkit:2.8.2'
--
GitLab